mRNA_P-littoralis_Contig815.4.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig815.4.2
Unique NamemRNA_P-littoralis_Contig815.4.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig815.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig815contigP-littoralis_Contig815:5980..6850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size210
Hectar predicted targeting categoryother localisation
Exons3
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.302707-UTR-P-littoralis_Contig815:5979..60091680791668.302707-UTR-P-littoralis_Contig815:5979..6009Pylaiella littoralis U1_48UTRP-littoralis_Contig815 5980..6009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791668.3135972-CDS-P-littoralis_Contig815:6009..60641680791668.3135972-CDS-P-littoralis_Contig815:6009..6064Pylaiella littoralis U1_48CDSP-littoralis_Contig815 6010..6064 +
1680791668.3266048-CDS-P-littoralis_Contig815:6566..66651680791668.3266048-CDS-P-littoralis_Contig815:6566..6665Pylaiella littoralis U1_48CDSP-littoralis_Contig815 6567..6665 +
1680791668.339069-CDS-P-littoralis_Contig815:6824..68501680791668.339069-CDS-P-littoralis_Contig815:6824..6850Pylaiella littoralis U1_48CDSP-littoralis_Contig815 6825..6850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig815.4.2prot_P-littoralis_Contig815.4.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig815 6010..6850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig815.4.2

>prot_P-littoralis_Contig815.4.2 ID=prot_P-littoralis_Contig815.4.2|Name=mRNA_P-littoralis_Contig815.4.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
MGLDPPRRRPRPLSVPRVVLEKSARPPPISRHPRRAPGAVPPGGSRRRQW
TAIKTRRRGQ
back to top

mRNA from alignment at P-littoralis_Contig815:5980..6850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig815.4.2 ID=mRNA_P-littoralis_Contig815.4.2|Name=mRNA_P-littoralis_Contig815.4.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=871bp|location=Sequence derived from alignment at P-littoralis_Contig815:5980..6850+ (Pylaiella littoralis U1_48)
AAGGTCTCCTTCCAGCAGAGGAACCTGAGGATGGGACTGGACCCACCCAG
GAGGCGGCCCCGCCCGCTATCTGTACCCCGGGTAGGTGGGCAAATACCTC
ATGCTTGTACTGCTGTACGAATTACGACATTGTCTCGTTGTTCAACTGCT
GTTTGCGCAATTTTAATTTTTGTAAAGATGACGAAGAACGGTTTGGTGGT
TTTTTTTAATTCTCTTAGAAGTGTCACTTTTATTTAATGACAGCAACACA
AGTTCCCGCAGAGTTAAAGCTGACCTCCAGGCCGAGGTAGCAGTGTTGTT
CGCTCACATGTGTGTACGTGGCGCTTTTCGTTTTCAGTGGGAGGCTTGTG
TTGTTGACCCCGATCACTCCTCCCTTCGTAAATAAATATTATTCGTAAAA
AAATACGCAGGAGTCGCGAGGCAGAGGCCTCATACCCGTCCCCACGTCCC
GGCGTTTCGAATTGTCCCGTCCTTTTCCCCTTCTGAATAAGGTTGTGTAG
CATGACCTTGTTTATTTGAAATCATGTAGACATTACCTCGGCTAACTTGT
CGTTTACCTGTGCCTGCTTGCGAAACACGTCTCTTAGTGCTGGAAAAAAG
CGCTCGTCCACCACCGATCTCACGCCATCCCCGCCGAGCACCAGGCGCAG
TTCCTCCAGGAGGAAGCAGGCGCCGACAGTGGACAGGTCAGGACCATTGC
TTTTGCTAGTATCGAAAACACTTCGATGAGGGGCATGGTGGAAGAATTTG
ATTGCAGAGGTCGTAATACCTTCATCATGATGGAGCGGCGCGCGCTGACT
CTTTTCACCCTCGTGACGTTCATCTCTTTGTTTCAATTTTTGTAGCGATC
AAGACGCGGAGGCGAGGCCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig815:5980..6850+

>mRNA_P-littoralis_Contig815.4.2 ID=mRNA_P-littoralis_Contig815.4.2|Name=mRNA_P-littoralis_Contig815.4.2|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig815:5980..6850+ (Pylaiella littoralis U1_48)
ATGGGACTGGACCCACCCAGGAGGCGGCCCCGCCCGCTATCTGTACCCCG
GGTAGTGCTGGAAAAAAGCGCTCGTCCACCACCGATCTCACGCCATCCCC
GCCGAGCACCAGGCGCAGTTCCTCCAGGAGGAAGCAGGCGCCGACAGTGG
ACAGCGATCAAGACGCGGAGGCGAGGCCAG
back to top