mRNA_P-littoralis_Contig813.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig813.6.1
Unique NamemRNA_P-littoralis_Contig813.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig813.6.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.180e-7
Identity = 77/271 (28.41%), Postives = 110/271 (40.59%), Query Frame = 3 
Query:  129 RPCRTKALPAKLQGAGEPGAAAGHGQAQLRQPAAAALAATGGRRTAGGQRAASTQREPVRLAKAPVRAGSPRAHVTTSSPPSSLGTSLQQRSPVSCGSVGVEIDVENDTALTAXXXXXXXXXXXXXXXXXXXXXXDGSNEVDADGGGVFSDEALEALLTACEGNGSKSPRSGRESGESSVVDARSNLARSDVVDSSDDSSPTNVNGKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 932
            RP RTK +P +LQG GE GAAAGHG AQ+  PA A                       V+L  AP  +G  R  V +   P    T  QQ  P   G +   +D E   A                         D S+    D  G  +  +  +   + E + + S    +E G+    D+       + +     +     +GK K  A   +VG R +      ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:   11 RPSRTKTVPLRLQGGGESGAAAGHGVAQI-TPAGA-----------------------VQLQPAP--SGMVRQAVHSRVTPH---TDTQQGVPPGAGLMPGLMDTEGTKARRVAVSMILNDKQFGEASGKNWSESDSSD----DDNGKDAPMSSGSSNVSVEESSAPSDIISQEPGDVESGDSVFAKEIREAIFGGGGAGRKKTHGKRKASAGGSAVGNRNSTKASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
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BLAST of mRNA_P-littoralis_Contig813.6.1 vs. uniprot
Match: A0A6H5K825_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K825_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.060e-6
Identity = 76/271 (28.04%), Postives = 108/271 (39.85%), Query Frame = 3 
Query:  129 RPCRTKALPAKLQGAGEPGAAAGHGQAQLRQPAAAALAATGGRRTAGGQRAASTQREPVRLAKAPVRAGSPRAHVTTSSPPSSLGTSLQQRSPVSCGSVGVEIDVENDTALTAXXXXXXXXXXXXXXXXXXXXXXDGSNEVDADGGGVFSDEALEALLTACEGNGSKSPRSGRESGESSVVDARSNLARSDVVDSSDDSSPTNVNGKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 932
            RP RTK +P +LQG GE GAAAGHG AQ+  PA A                       V+L  AP  +G  R  V +   P    T  QQ  P   G +   +D E   A                         D S+    D  G  +  +  +   + E +   S    +E G+    D+       + +     +     + K K  A   +VG R +      ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:   11 RPSRTKTVPLRLQGGGESGAAAGHGVAQI-TPAGA-----------------------VQLQPAP--SGMVRQAVHSRVTPH---TDTQQGVPPGAGLMPGLMDTEGTKARRVAVSMILNDKQFGEASGKNWSESDSSD----DDNGKDAPMSSGSSNVSVEESSVPSDIGSQEPGDVESGDSVFAKEIREAIFGGGGAGRKKTHRKRKASAGGSAVGNRNSTKASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig813.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKV3_9PHAE5.180e-728.41Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K825_9PHAE3.060e-628.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig813contigP-littoralis_Contig813:55681..56612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIC6
Model size933
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.9e-05
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size834
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791667.8714457-CDS-P-littoralis_Contig813:55680..565141680791667.8714457-CDS-P-littoralis_Contig813:55680..56514Pylaiella littoralis U1_48CDSP-littoralis_Contig813 55681..56514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791667.8875415-UTR-P-littoralis_Contig813:56514..566121680791667.8875415-UTR-P-littoralis_Contig813:56514..56612Pylaiella littoralis U1_48UTRP-littoralis_Contig813 56515..56612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig813.6.1prot_P-littoralis_Contig813.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig813 55681..56514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig813.6.1

>prot_P-littoralis_Contig813.6.1 ID=prot_P-littoralis_Contig813.6.1|Name=mRNA_P-littoralis_Contig813.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
MDEDNSLRTSRPCRTKALPAKLQGAGEPGAAAGHGQAQLRQPAAAALAAT
GGRRTAGGQRAASTQREPVRLAKAPVRAGSPRAHVTTSSPPSSLGTSLQQ
RSPVSCGSVGVEIDVENDTALTATGTGGQARVLETEAGAGTDSSSDGSNE
VDADGGGVFSDEALEALLTACEGNGSKSPRSGRESGESSVVDARSNLARS
DVVDSSDDSSPTNVNGKGKGKARTESVGGRRNPHQASAEKAKGKGYQLWA
LGFLQRACSYRDIPRMSQQKSKEAIAEA
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mRNA from alignment at P-littoralis_Contig813:55681..56612-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig813.6.1 ID=mRNA_P-littoralis_Contig813.6.1|Name=mRNA_P-littoralis_Contig813.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=932bp|location=Sequence derived from alignment at P-littoralis_Contig813:55681..56612- (Pylaiella littoralis U1_48)
TGAAGCCCGAGCTTCTTCCCGCCCACAGCAGTCACGCCGCATCCGAACTC
TAGACGCCAAGCGAAGCACAGCAGCAGTTGTCGTGCGAAGCCCACAACAT
GGATGAAGACAACAGCCTTCGAACTAGTAGACCGTGTAGGACCAAGGCTC
TACCTGCAAAGCTGCAGGGCGCAGGTGAGCCAGGTGCTGCTGCTGGACAT
GGACAAGCGCAGCTCCGGCAGCCTGCTGCTGCTGCCCTTGCTGCTACCGG
CGGGCGGCGTACTGCCGGCGGGCAGCGAGCTGCAAGCACGCAGCGTGAAC
CGGTCCGTTTGGCCAAAGCACCGGTAAGAGCAGGGAGCCCGAGGGCACAT
GTTACCACATCCTCTCCGCCCTCAAGCCTCGGAACTTCTTTGCAGCAGCG
TTCACCGGTATCATGTGGGTCGGTAGGGGTGGAAATAGATGTTGAGAACG
ACACTGCTTTGACGGCCACGGGCACCGGTGGTCAAGCTCGAGTGCTCGAG
ACGGAAGCTGGAGCAGGCACCGACAGCAGCTCTGACGGCAGCAATGAGGT
GGACGCTGACGGCGGAGGGGTGTTCTCGGACGAGGCACTTGAGGCATTGC
TGACAGCATGTGAGGGCAACGGAAGTAAGTCGCCAAGATCGGGGCGCGAA
TCTGGCGAATCGAGTGTTGTTGACGCCAGGTCGAATTTGGCGCGCTCCGA
TGTCGTCGACAGTAGCGACGACTCGTCCCCAACGAACGTCAATGGCAAGG
GAAAGGGGAAGGCGAGGACCGAAAGTGTCGGCGGAAGGAGGAACCCCCAC
CAGGCAAGTGCCGAAAAGGCAAAAGGGAAGGGATACCAGTTGTGGGCCCT
CGGCTTCTTGCAGCGAGCCTGCTCGTATCGTGACATCCCGAGAATGTCAC
AACAAAAATCGAAGGAGGCGATAGCGGAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig813:55681..56612-

>mRNA_P-littoralis_Contig813.6.1 ID=mRNA_P-littoralis_Contig813.6.1|Name=mRNA_P-littoralis_Contig813.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig813:55681..56612- (Pylaiella littoralis U1_48)
ATGGATGAAGACAACAGCCTTCGAACTAGTAGACCGTGTAGGACCAAGGC
TCTACCTGCAAAGCTGCAGGGCGCAGGTGAGCCAGGTGCTGCTGCTGGAC
ATGGACAAGCGCAGCTCCGGCAGCCTGCTGCTGCTGCCCTTGCTGCTACC
GGCGGGCGGCGTACTGCCGGCGGGCAGCGAGCTGCAAGCACGCAGCGTGA
ACCGGTCCGTTTGGCCAAAGCACCGGTAAGAGCAGGGAGCCCGAGGGCAC
ATGTTACCACATCCTCTCCGCCCTCAAGCCTCGGAACTTCTTTGCAGCAG
CGTTCACCGGTATCATGTGGGTCGGTAGGGGTGGAAATAGATGTTGAGAA
CGACACTGCTTTGACGGCCACGGGCACCGGTGGTCAAGCTCGAGTGCTCG
AGACGGAAGCTGGAGCAGGCACCGACAGCAGCTCTGACGGCAGCAATGAG
GTGGACGCTGACGGCGGAGGGGTGTTCTCGGACGAGGCACTTGAGGCATT
GCTGACAGCATGTGAGGGCAACGGAAGTAAGTCGCCAAGATCGGGGCGCG
AATCTGGCGAATCGAGTGTTGTTGACGCCAGGTCGAATTTGGCGCGCTCC
GATGTCGTCGACAGTAGCGACGACTCGTCCCCAACGAACGTCAATGGCAA
GGGAAAGGGGAAGGCGAGGACCGAAAGTGTCGGCGGAAGGAGGAACCCCC
ACCAGGCAAGTGCCGAAAAGGCAAAAGGGAAGGGATACCAGTTGTGGGCC
CTCGGCTTCTTGCAGCGAGCCTGCTCGTATCGTGACATCCCGAGAATGTC
ACAACAAAAATCGAAGGAGGCGATAGCGGAGGCG
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