mRNA_P-littoralis_Contig812.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig812.24.1
Unique NamemRNA_P-littoralis_Contig812.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig812.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig812contigP-littoralis_Contig812:115024..115155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size113
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.9256775-CDS-P-littoralis_Contig812:115023..1150521680791666.9256775-CDS-P-littoralis_Contig812:115023..115052Pylaiella littoralis U1_48CDSP-littoralis_Contig812 115024..115052 -
1680791666.9382696-CDS-P-littoralis_Contig812:115073..1151461680791666.9382696-CDS-P-littoralis_Contig812:115073..115146Pylaiella littoralis U1_48CDSP-littoralis_Contig812 115074..115146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.9512722-UTR-P-littoralis_Contig812:115146..1151551680791666.9512722-UTR-P-littoralis_Contig812:115146..115155Pylaiella littoralis U1_48UTRP-littoralis_Contig812 115147..115155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig812.24.1prot_P-littoralis_Contig812.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig812 115024..115146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig812.24.1

>prot_P-littoralis_Contig812.24.1 ID=prot_P-littoralis_Contig812.24.1|Name=mRNA_P-littoralis_Contig812.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=34bp
MVVVVVVVALPRHQWPLELRLSDMVLSVASLLLL
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mRNA from alignment at P-littoralis_Contig812:115024..115155-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig812.24.1 ID=mRNA_P-littoralis_Contig812.24.1|Name=mRNA_P-littoralis_Contig812.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig812:115024..115155- (Pylaiella littoralis U1_48)
GTGGCGGTCATGGTGGTCGTGGTAGTCGTGGTGGCGTTGCCTCGGCACCA
GTGGCCACTAGAGCTACGACTCTCCGATATGGAGGTGTAGGGGTACCCCC
GGGTGCTGTCCGTCGCTTCACTACTGCTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig812:115024..115155-

>mRNA_P-littoralis_Contig812.24.1 ID=mRNA_P-littoralis_Contig812.24.1|Name=mRNA_P-littoralis_Contig812.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=102bp|location=Sequence derived from alignment at P-littoralis_Contig812:115024..115155- (Pylaiella littoralis U1_48)
ATGGTGGTCGTGGTAGTCGTGGTGGCGTTGCCTCGGCACCAGTGGCCACT
AGAGCTACGACTCTCCGATATGGTGCTGTCCGTCGCTTCACTACTGCTGC
TG
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