mRNA_P-littoralis_Contig812.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig812.22.1
Unique NamemRNA_P-littoralis_Contig812.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig812.22.1 vs. uniprot
Match: A0A6H5KTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.410e-14
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 3 
Query:    3 LPEVS-ESVVADWLTEGRSVDIRSTRVLFRGMQRAMDLGAAGGLSGALV*KEDGSSSGHMWVRLRIQASMNPNYYNAYVKLAVVRIAGTGSFEAPDDCDSQAEDEESDGDISVVDGGEEFWRLLATRVLAALCKCKAGRKGLCHHVCMIL 449
            LPE++ ++++  WL    S+   + RVL+RGM+R +DLGA G LSG       G + G + +RL  + SM    Y     + V R+         D+ DS + D  SD DI          RL+AT V AA C+C++G  G CHHVC +L
Sbjct:  188 LPELAGDTIIIAWLRARGSLIGDTGRVLYRGMERVLDLGALGWLSGIPC----GENGGTLHLRLNSRGSMRDKEYLVQADVRVERVDVVAQHPDVDEGDSNSSDGRSDDDIRR--------RLVATCVEAAWCQCQSGAGGGCHHVCQLL 325
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BLAST of mRNA_P-littoralis_Contig812.22.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.070e-5
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 3 
Query:    3 LPEVSESVVADWLTEGRSVDIRSTRVLFRGMQRAMDLGAAGGLSGALV*KEDGSSSGHMWVRLRIQASMNPNY-YNAYVKLAVVRIAGTGSFEAPDD-CDSQAEDEESDGDISVVDGGEEFWR---LLATRVLAALCKCKAGRKGLCHHVCMIL 449
            LPE+S+SV+  +L +   +    +RV +RGMQ+ MD+G    L G          +G M++ +   AS +    Y   ++L V         EA D+     A +EE  G    V+ G+  W    L+A  V+AALC+C AG  G C H  M+L
Sbjct:  562 LPEMSKSVILQFLGQVNPISGEGSRVWYRGMQKVMDMGNLNRLWGVPA------KNGLMYLGMSAGASFSDTKTYEVRIQLRV---------EALDESAHPSAAEEEGRG----VESGQ--WPRPPLVALGVVAALCECPAGISGGCSHTAMVL 694
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig812.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTJ3_9PHAE1.410e-1436.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFX7_9PHAE2.070e-532.47Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig812contigP-littoralis_Contig812:110507..111182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.865485-CDS-P-littoralis_Contig812:110506..1107621680791666.865485-CDS-P-littoralis_Contig812:110506..110762Pylaiella littoralis U1_48CDSP-littoralis_Contig812 110507..110762 -
1680791666.8782575-CDS-P-littoralis_Contig812:110989..1110061680791666.8782575-CDS-P-littoralis_Contig812:110989..111006Pylaiella littoralis U1_48CDSP-littoralis_Contig812 110990..111006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.887473-UTR-P-littoralis_Contig812:111006..1111821680791666.887473-UTR-P-littoralis_Contig812:111006..111182Pylaiella littoralis U1_48UTRP-littoralis_Contig812 111007..111182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig812.22.1prot_P-littoralis_Contig812.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig812 110507..111006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig812.22.1

>prot_P-littoralis_Contig812.22.1 ID=prot_P-littoralis_Contig812.22.1|Name=mRNA_P-littoralis_Contig812.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MWVRLRIQASMNPNYYNAYVKLAVVRIAGTGSFEAPDDCDSQAEDEESDG
DISVVDGGEEFWRLLATRVLAALCKCKAGRKGLCHHVCMIL
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mRNA from alignment at P-littoralis_Contig812:110507..111182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig812.22.1 ID=mRNA_P-littoralis_Contig812.22.1|Name=mRNA_P-littoralis_Contig812.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=676bp|location=Sequence derived from alignment at P-littoralis_Contig812:110507..111182- (Pylaiella littoralis U1_48)
CTCTCCCGGAGGTATCTGAGTCTGTTGTCGCCGATTGGCTCACGGAGGGT
CGATCTGTTGACATACGGTCGACACGGGTGTTGTTTCGGGGAATGCAGAG
GGCAATGGATCTCGGCGCAGCTGGAGGGCTATCGGGAGCGTTGGTGTAGA
AAGAGGACGGCAGCAGCAGCGGACATATGTGGGTTCGCCTGCGGTGAGTG
CTGAGTTTTTCGTTTTGAACGCAGTAGGCGACGTCAAATATTATCCCTTT
GTTGGCTCTTTTAAGTCTGCTGCTCTCCCATGCAACTTCATGCGTTGTAG
TCGCCGTAAAACGTTCGAGGGAAGTGCTGAACAAATGAAAAAATGTATCT
TTCTCGATATCACGGTGCATGACAGCCCCCCACCCGGCTTCGGGGTTTCT
CCTTGCGGCAACCAACACAGGATACAAGCGTCGATGAATCCTAACTACTA
CAACGCATACGTGAAGCTTGCAGTCGTGAGGATCGCGGGAACCGGGTCGT
TTGAAGCTCCTGACGACTGTGATTCACAAGCTGAGGACGAGGAAAGCGAT
GGTGACATATCCGTAGTCGACGGCGGGGAGGAGTTTTGGAGACTCCTGGC
GACGAGGGTTCTGGCGGCGTTGTGTAAATGCAAAGCAGGGAGGAAAGGGC
TGTGCCACCACGTGTGCATGATTCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig812:110507..111182-

>mRNA_P-littoralis_Contig812.22.1 ID=mRNA_P-littoralis_Contig812.22.1|Name=mRNA_P-littoralis_Contig812.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig812:110507..111182- (Pylaiella littoralis U1_48)
ATGTGGGTTCGCCTGCGGATACAAGCGTCGATGAATCCTAACTACTACAA
CGCATACGTGAAGCTTGCAGTCGTGAGGATCGCGGGAACCGGGTCGTTTG
AAGCTCCTGACGACTGTGATTCACAAGCTGAGGACGAGGAAAGCGATGGT
GACATATCCGTAGTCGACGGCGGGGAGGAGTTTTGGAGACTCCTGGCGAC
GAGGGTTCTGGCGGCGTTGTGTAAATGCAAAGCAGGGAGGAAAGGGCTGT
GCCACCACGTGTGCATGATTCTA
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