mRNA_P-littoralis_Contig811.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig811.45.1
Unique NamemRNA_P-littoralis_Contig811.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 6.880e-53
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 PVQLPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFT 300
            P+ LPP++VL YW+KVGKQMFPSLKYVAQQTFG QASAAQ+ERDFSHCGLFS GNRSR EEYWLEMVM LKGN++ IPDYKDIP+IDSKDIRKCLPAK++
Sbjct:  484 PIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAKYS 583
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 4.090e-42
Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   10 LPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQDD 312
            L PTEVL+YW+  G+  FP+LK+VAQQTFG Q SAA VERDFS CGLF V NRSRVEEYW+EMVMFL  NF+FIP Y +IP+IDSKDIRKCLPAKF G D+
Sbjct:  727 LHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGTDE 827
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 5.410e-37
Identity = 64/98 (65.31%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   10 LPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTG 303
            L P +VLNYW + G+  FP+L YVAQQ FG QA AAQ+ERDFS  GL    NR+R++EYW+EMV+FLK NFQ IP Y DIPN+DSK IR+CLPAKF G
Sbjct:  382 LQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKG 479
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.430e-36
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   19 TEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQDD 312
            +EVL+YW + GK  FPSLK+VAQQTFG QASAA VERDFS CGLF V NRSRV+EYW+EMVMFLK NF       +IP ID KDIRKCLPAKF G D+
Sbjct:  388 SEVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRI-NIPQIDPKDIRKCLPAKFEGTDE 484
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.320e-31
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    7 QLPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQD 309
            +L   E+L +W + G++ FP L  VAQQ FG QA AAQVERDFS C      NRSR++ YW+EMVMFL  NF+ IP +KDIP I +KDI  CLP +F G D
Sbjct:   24 ELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGGD 124
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.990e-30
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    7 QLPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQD 309
            +L   EVL +W   G++MFP L  VAQQ  G QA AAQVERDFS C      NRSR++ YW+EMVMFL  N++ IP +KDIP I +KDIR CLP +F G D
Sbjct:   99 ELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGD 199
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.120e-28
Identity = 53/96 (55.21%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   22 EVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQD 309
            EVL +W + GK +FP L  VAQQ FG QA+ +QVERDFS  G+    NRSR++ YW+E+VMFL  NF  IP  K IP + +K+IR CLPA+F G+D
Sbjct:  191 EVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHGRD 286
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BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.210e-28
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    7 QLPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQD 309
            +L   EVL +W   G++MFP L  VAQQ  G QA AAQVERDFS C      NRSR++ YW+EMVMFL  N++ IP +KDIP I +KDIR CLP +F G D
Sbjct:  497 ELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGD 597
[Close]
BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.610e-27
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   58 MFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFTGQD 309
            MFP L  VAQQ  G QA AAQVERDFS C      NRSR++ YW+EMVMFL  N++ IP +KDIP I +KDIR CLP +F G D
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGD 84
[Close]
BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.110e-24
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   22 EVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGLFSVGNRSRVEEYWL 192
            +VL YW+KVG+QM PSLKYVAQQTFG QASAAQ+ERDFSHCGLFS GNRSR EEYWL
Sbjct:  597 DVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWL 653
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig811.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JB08_9PHAE6.880e-5383.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJJ9_9PHAE4.090e-4273.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE5.410e-3765.31Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE1.430e-3670.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSA7_9PHAE1.320e-3155.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.990e-3056.44Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE1.120e-2855.21Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ46_9PHAE2.210e-2856.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE8.610e-2760.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K0P1_9PHAE1.110e-2484.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig811contigP-littoralis_Contig811:97949..98260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI54656
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.68e-05
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota,3QH9R@4776|Peronosporales
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.7108376-CDS-P-littoralis_Contig811:97948..982601680791666.7108376-CDS-P-littoralis_Contig811:97948..98260Pylaiella littoralis U1_48CDSP-littoralis_Contig811 97949..98260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig811.45.1prot_P-littoralis_Contig811.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig811 97949..98260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig811.45.1

>prot_P-littoralis_Contig811.45.1 ID=prot_P-littoralis_Contig811.45.1|Name=mRNA_P-littoralis_Contig811.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
PVQLPPTEVLNYWSKVGKQMFPSLKYVAQQTFGVQASAAQVERDFSHCGL
FSVGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNIDSKDIRKCLPAKFT
GQDD
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mRNA from alignment at P-littoralis_Contig811:97949..98260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig811.45.1 ID=mRNA_P-littoralis_Contig811.45.1|Name=mRNA_P-littoralis_Contig811.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig811:97949..98260- (Pylaiella littoralis U1_48)
CCCGTGCAGTTGCCGCCCACCGAAGTCCTCAACTACTGGAGCAAAGTAGG
GAAACAGATGTTTCCCTCGCTCAAGTATGTGGCGCAGCAAACATTCGGCG
TTCAGGCTTCTGCCGCTCAGGTCGAGAGAGACTTCAGCCACTGCGGTCTT
TTCAGTGTAGGGAACCGCAGTCGTGTAGAAGAGTATTGGCTGGAAATGGT
GATGTTTCTCAAGGGAAATTTCCAGTTTATTCCCGACTACAAGGATATCC
CCAACATTGACTCTAAGGACATCAGGAAGTGCCTCCCTGCCAAGTTCACC
GGGCAAGACGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig811:97949..98260-

>mRNA_P-littoralis_Contig811.45.1 ID=mRNA_P-littoralis_Contig811.45.1|Name=mRNA_P-littoralis_Contig811.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig811:97949..98260- (Pylaiella littoralis U1_48)
CCCGTGCAGTTGCCGCCCACCGAAGTCCTCAACTACTGGAGCAAAGTAGG
GAAACAGATGTTTCCCTCGCTCAAGTATGTGGCGCAGCAAACATTCGGCG
TTCAGGCTTCTGCCGCTCAGGTCGAGAGAGACTTCAGCCACTGCGGTCTT
TTCAGTGTAGGGAACCGCAGTCGTGTAGAAGAGTATTGGCTGGAAATGGT
GATGTTTCTCAAGGGAAATTTCCAGTTTATTCCCGACTACAAGGATATCC
CCAACATTGACTCTAAGGACATCAGGAAGTGCCTCCCTGCCAAGTTCACC
GGGCAAGACGAT
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