mRNA_P-littoralis_Contig811.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig811.12.1
Unique NamemRNA_P-littoralis_Contig811.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig811.12.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.530e-19
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 NLGFLLAFHNDPAAS-TSLYRSRDAMLRYPGLCRHNCALHLAHTQLWCMATGHHWERYEGLRDAYNHVRPAGYTAAPPL 234
            NL FL A +N+PAAS  S +RS  A+LRYPGLCR+N   H AHTQLW +A     E+YE LR AYN +RPA  + APP 
Sbjct:   44 NLSFLQALNNEPAASGESFHRSVSALLRYPGLCRYNPRSHSAHTQLWALANARRREQYEALRAAYNPMRPARLSPAPPF 122
[Close]
BLAST of mRNA_P-littoralis_Contig811.12.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.790e-17
Identity = 45/79 (56.96%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 NLGFLLAFHNDPAAST-SLYRSRDAMLRYPGLCRHNCALHLAHTQLWCMATGHHWERYEGLRDAYNHVRPAGYTAAPPL 234
            NL FL A +ND AAS  S +RS  A+LRYPGLCR+N   H AHTQLW +A     E YE LR AYN +RPA  + APP 
Sbjct:  490 NLCFLQALNNDIAASAGSFHRSVSALLRYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSPAPPF 568
[Close]
BLAST of mRNA_P-littoralis_Contig811.12.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 8.650e-16
Identity = 43/79 (54.43%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    1 NLGFLLAFHNDPAAST-SLYRSRDAMLRYPGLCRHNCALHLAHTQLWCMATGHHWERYEGLRDAYNHVRPAGYTAAPPL 234
            NL FL A  N+ AAS  S +RS  A+LRYPGLCR+N   H  HTQLW +A     E+YE LR AYN +RPA  + APP 
Sbjct:  566 NLCFLQALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSPAPPF 644
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig811.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K5S2_9PHAE7.530e-1956.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSE2_ECTSI2.790e-1756.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE8.650e-1654.43Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig811contigP-littoralis_Contig811:23812..24414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size238
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791666.1043568-CDS-P-littoralis_Contig811:23811..239211680791666.1043568-CDS-P-littoralis_Contig811:23811..23921Pylaiella littoralis U1_48CDSP-littoralis_Contig811 23812..23921 +
1680791666.118798-CDS-P-littoralis_Contig811:24288..244121680791666.118798-CDS-P-littoralis_Contig811:24288..24412Pylaiella littoralis U1_48CDSP-littoralis_Contig811 24289..24412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig811.12.1prot_P-littoralis_Contig811.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig811 23812..24412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig811.12.1

>prot_P-littoralis_Contig811.12.1 ID=prot_P-littoralis_Contig811.12.1|Name=mRNA_P-littoralis_Contig811.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
NLGFLLAFHNDPAASTSLYRSRDAMLRYPGLCRHNCALHLAHTQLWCMAT
GHHWERYEGLRDAYNHVRPAGYTAAPPL
back to top

mRNA from alignment at P-littoralis_Contig811:23812..24414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig811.12.1 ID=mRNA_P-littoralis_Contig811.12.1|Name=mRNA_P-littoralis_Contig811.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=603bp|location=Sequence derived from alignment at P-littoralis_Contig811:23812..24414+ (Pylaiella littoralis U1_48)
AATCTAGGATTCTTGCTGGCCTTCCACAACGATCCCGCTGCGTCGACATC
TTTGTATCGGAGTCGGGATGCGATGCTGCGCTACCCGGGTTTGTGTCGCC
ATAACTGCGCGTGAGTATGCCGTCTCCAGGATAGGAGTGATGGAAAGACA
ACATGGCACCCTGGGATTACCACCACGCCCCTAACTTTCACATGAATCTA
CGGCTCAACTTCCACAGTCTGATCCTGATCACGTGCATGCCGTGCCGCTC
AGAAAACACCCCCTCTGCTACAGTAGCTCCTGGCCTTTGACTACGATAGG
CAACCGAAACCGATGCTTGCGTTCCTCAACGGTACATGACATTATCCTTA
ATGCATATGTCAAGTCGAGGACGTTCGTCCAAATTATCTGTTGTGGTCGT
GCCCCTCGTGTTGTCTACCTCTTTCTCCCGGTCAGCGTTCGCCCTCTATG
TTGTACGGTACACTGGTGCGTGAGCAGGTTGCACCTTGCTCACACTCAGC
TCTGGTGTATGGCCACCGGTCATCATTGGGAGCGGTACGAGGGGCTCAGA
GACGCATACAACCACGTGCGGCCAGCAGGGTACACAGCTGCCCCACCTCT
CGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig811:23812..24414+

>mRNA_P-littoralis_Contig811.12.1 ID=mRNA_P-littoralis_Contig811.12.1|Name=mRNA_P-littoralis_Contig811.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig811:23812..24414+ (Pylaiella littoralis U1_48)
AATCTAGGATTCTTGCTGGCCTTCCACAACGATCCCGCTGCGTCGACATC
TTTGTATCGGAGTCGGGATGCGATGCTGCGCTACCCGGGTTTGTGTCGCC
ATAACTGCGCGTTGCACCTTGCTCACACTCAGCTCTGGTGTATGGCCACC
GGTCATCATTGGGAGCGGTACGAGGGGCTCAGAGACGCATACAACCACGT
GCGGCCAGCAGGGTACACAGCTGCCCCACCTCTC
back to top