mRNA_P-littoralis_Contig811.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig811.8.1
Unique NamemRNA_P-littoralis_Contig811.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig811.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig811contigP-littoralis_Contig811:12967..16430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size367
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791665.9043539-CDS-P-littoralis_Contig811:12966..131501680791665.9043539-CDS-P-littoralis_Contig811:12966..13150Pylaiella littoralis U1_48CDSP-littoralis_Contig811 12967..13150 +
1680791665.9192326-CDS-P-littoralis_Contig811:16248..164301680791665.9192326-CDS-P-littoralis_Contig811:16248..16430Pylaiella littoralis U1_48CDSP-littoralis_Contig811 16249..16430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig811.8.1prot_P-littoralis_Contig811.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig811 12967..16430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig811.8.1

>prot_P-littoralis_Contig811.8.1 ID=prot_P-littoralis_Contig811.8.1|Name=mRNA_P-littoralis_Contig811.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
QAQAKSLTACLHPSGKDLTSQPLARCATARRQQGLCKKLRAGLSTCKVRS
QGRGGYPTGASALNIRCRNIITTTSSSSSSSSSRDPRGGICGASVDYSEG
HNQQEEDLRFLRQAQASLRRLR
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mRNA from alignment at P-littoralis_Contig811:12967..16430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig811.8.1 ID=mRNA_P-littoralis_Contig811.8.1|Name=mRNA_P-littoralis_Contig811.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3464bp|location=Sequence derived from alignment at P-littoralis_Contig811:12967..16430+ (Pylaiella littoralis U1_48)
CAGGCACAAGCGAAATCGTTGACTGCATGTCTCCACCCTTCAGGGAAGGA
CTTGACATCACAACCGCTGGCACGCTGCGCCACTGCACGCCGGCAGCAGG
GCCTCTGTAAGAAGCTCAGAGCAGGCTTGAGCACGTGTAAAGTACGGAGC
CAAGGCCGTGGAGGGTACCCCACTGGAGCATCAGGTCAGCCCTTTCGTCT
TCGTACAGCAGTACAGCAGTACAGTATTTGTTGTTCACAAACCTGGTGCG
TTGAACCAGTTGCCGTTCACCGCTGTTCACAACCTTCAAGCCAGCAATGA
TCCCTGTGTGCAGTATTACCATCTAGCTGTTCAGTAATACTTCGAACGTA
TGATATCATCCTGATGACACAGCAGTATGTCATATTATATGCCATGGTTT
CATGTCACATGATACAGATACGATATACTGTACTCTAAAACAGTCAGTCA
CGGAGGAGGTGAGTCCGAACTGGCACCTTTGCAACCGTTTGTTTCTTCAG
CTTGAAAACCTAGACTCCCTTGCCCCTCTCACCGCACGCACGAAGTTTAG
GCAATAAAAGACGTCTTCAGCTGCACGTTCGGTAACGAAGCAGCCAGTTC
ATCAAATATTATTTCTTCCCAGGTTTGCCCTCTCTGTTTTATCCGCAAGT
ACAACGTCTGACATCATAATCTGGAGAAATGCAAGCAGACAATGAGTGAG
AAGATTAAGATTGCGAATATCCAGTACGTAACTCCACCCTCTACGTGAGG
TCGCCTGAATTATTTCTGCGGCGCATGTGTCTTCAATTTTTTTCGGAGGA
GGGTCCACATGAGCAGTCTCATGTTTCCCTCGCTCGTGCATCGACGAGTA
AAGTCGAGCGAAACGAAACGAAACGAAAACGACGGGATTTACGAAATTAT
TTTCTCCATCCTGTATTTCGACCCTCCAGAGCTCCCGAGCGAGACTTGAT
ATCAAGGACAGCAGAACAGCACATTGTAGACCTAATTATTTACTGATCCC
TTGGCCACCGCCGCCGATTATTGTGATGTCTATGGACATGCCTCTCTGCC
TTCAGATGTATCCATCACTCGGCCAGTGGAATAACGGGGCGATTTGCTGG
AAGCATCAATCAATATAAAACAAACATGTGATAGACCAACACGTGGTGTA
ACGTGTGTCACACAAGGCGGCCACCAAACAAATTGTCTTGAGCCTGATAA
CCTCAAGGGAAAGCTGCAACGGTGCATTATTATCTGATGAGTATAGAAAT
ACAGCCAAGGTAGATGTATATTATTCTCTGTGTTCGCTGCAATATCTACC
CCGGATCCTCGTCTGGGGAGAGGCGAATACATTGATGTGTTTCTAAGAAG
AAAAAAAAAACACTCAACACATGATGCAACGTACTTCACAAAAGACGCAC
CGAATTGTCTTGTTGAGCCTGGTTCCCTCAGGGGAGCTGCAGCGGTACAC
TTTCTGAAGAGTTGCAGCAACGCTTTGGTAGATGTATCTTTTTCGTTGTG
TTCGTTGCAATATCTACTACAGACCCTCGTCTGGAGAGAGGCGAACACAT
TGATATTTTTGTTAGGAACTAAAAAAAAAAGGGACTATTTGCGACATGTT
GTGCAGGCGCGGCCGCGGTCATCGCGTTGTGGTTGTGCACTGAAACTACG
ACGAACGCCGCATCAGACAAATCAAACAGGGGGGGGGGGGGGGTGGTTCG
GGGGGCGCGAGTGAGCTGTCGAGACCTACGAGGTCGAGATAGGAGGGGGT
TGTTGTCGTACAGCAGTAGTAGAGGGTGTGAAGGGGCCTGGACCCACGAC
CCGTAAAAAAAACAAACTACGAAGTAATCTCTTACCCCATCCATTAGGAG
AGGTGGATAGCCTGGTTCCTGTGCCTAGTGAATCTTCTGCTGTAGGTTGC
TGTTGGTGGTGAACAGCCTTACTGGCATACGCTTTCTTCGTGTGTGCCAG
TGGTAGAGCATCGACGGGCGTCGGCTTGCACACACGAGTGTGAGCGAGAC
CGACAGACAATCACGCAGAGAGACCGGGATGGATACCATCAAACAATGCG
GACCCTTGAGACGCGTTCCGTGCAAATCACGGTCGTTTATCTGATGAGTT
GTAAAAATTCAGGCAGGTGCATAAAATGTACTCGAGTTTTAGAAGCGTTT
TGTCTTTGTGGTCATTGCGATTCTCCTCTAGATCCTTGTCTGGAGAGAGG
CCAACACGTTTGTGAGAAAAAACAATAAGCGAAGTGCATACCTCGAAGTT
ATATAGTGTGATGCTGTAGCACAGATATGATTCGTCGGCAAAAAGGACAT
CAAAAAGTGAAAAAGTGAAGGTGCTGCTGATCGTACGATACTCAGTGCGG
GGCGAACTGACTCACATACGGGTTTCCCAAAAATCGGATAAGAATTCTTC
GTGTTCTGCTGTTGACCTGGGAGGTGCACGGGTAGTCGCTATATATTGCA
CCAACTAGTCAATAATTATCCGCTGGATTGTCTCGGAAGAAACCCCTTTT
CTGTAAATTGAAGACATACATGTGATGCCTCCCTCAGTCCCGCGTATAGC
GCGCACTCCTCTTGGACATCGCGCTGCACCGCGTTCTGAACTGCCCGTAC
GTCGTACGCGAAACGGCTGTAAAAACTTGAAGAGACCGAAAACCACAACA
CGAGGAGACGAAGAGTTCTTCCTGGTTGTGTGACACCGTTGTTAAAAAGA
TACTTCGAGCATGACACTTCATAGTTCAGTTGATGACTCACTCTGCTCTC
TCTCTCTCTGCTCTTTCTCTCTCTCTGTCTCTCTCGCTCTCTCTCTTTCT
CTCTTCCTGTCTCTCGCTCTTCGTCTTCTGTATCTTTTTGGCCTCGTTGC
AGCATGGCACGCATATGCACACAACCTACACACGCACCCACCCAACAACG
CAACTCACCAACGTCCTCGACAAAGCGTAGCTAGTAGTCACGACGCCAAC
GCGCAAGTTCATTCCATTTCGCGCCCCTCAACACGGAATCAACCGTGCAG
TGAAATCGAAACAAATTTGAAAAAGGGAAAAATTAGCTTTTCTACTCGTA
GTGGTGCGAGAGAGAGAGAAAAAGAGGAAGGGGCAGAGAGAGATAGATAG
AGCGAGATAGAAATAGAGAGGGAAACAGAGAGAGAGAACAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGGAAGATCTACCCCCCCCAGCAGAGACATAC
AGCAGAAGTACACATGAAAGCTGAGGGACTTCAACAGCTTATCCTACTCA
GTTGAATGACGTGCGTTGATCCACGGCGGCAGCCCTCAACATCAGGTGCA
GAAACATCATCACCACGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGG
GATCCCCGCGGAGGAATATGTGGTGCGTCTGTGGATTACTCCGAAGGTCA
TAACCAACAAGAAGAAGACCTGCGATTTCTGCGTCAAGCGCAAGCGTCCC
TGCGACGGCTTAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig811:12967..16430+

>mRNA_P-littoralis_Contig811.8.1 ID=mRNA_P-littoralis_Contig811.8.1|Name=mRNA_P-littoralis_Contig811.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig811:12967..16430+ (Pylaiella littoralis U1_48)
CAGGCACAAGCGAAATCGTTGACTGCATGTCTCCACCCTTCAGGGAAGGA
CTTGACATCACAACCGCTGGCACGCTGCGCCACTGCACGCCGGCAGCAGG
GCCTCTGTAAGAAGCTCAGAGCAGGCTTGAGCACGTGTAAAGTACGGAGC
CAAGGCCGTGGAGGGTACCCCACTGGAGCATCAGCCCTCAACATCAGGTG
CAGAAACATCATCACCACGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GGGATCCCCGCGGAGGAATATGTGGTGCGTCTGTGGATTACTCCGAAGGT
CATAACCAACAAGAAGAAGACCTGCGATTTCTGCGTCAAGCGCAAGCGTC
CCTGCGACGGCTTAGG
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