mRNA_P-littoralis_Contig810.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig810.19.1
Unique NamemRNA_P-littoralis_Contig810.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig810.19.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.910e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 FEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQLRATSAKG 171
            FE  PEI+D+IYKFVLQKFHNVRMGDF+RRLS+NSTLRLSKGELALRQ LRATSAKG
Sbjct:  275 FEAQPEILDDIYKFVLQKFHNVRMGDFARRLSQNSTLRLSKGELALRQNLRATSAKG 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig810.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KW14_9PHAE5.910e-2387.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig810contigP-littoralis_Contig810:91005..91180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791665.65484-CDS-P-littoralis_Contig810:91006..911801680791665.65484-CDS-P-littoralis_Contig810:91006..91180Pylaiella littoralis U1_48CDSP-littoralis_Contig810 91007..91180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig810.19.1prot_P-littoralis_Contig810.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig810 91007..91180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig810.19.1

>prot_P-littoralis_Contig810.19.1 ID=prot_P-littoralis_Contig810.19.1|Name=mRNA_P-littoralis_Contig810.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
FEEHPEIIDNIYKFVLQKFHNVRMGDFSRRLSENSTLRLSKGELALRQQL
RATSAKGA
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mRNA from alignment at P-littoralis_Contig810:91005..91180-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig810.19.1 ID=mRNA_P-littoralis_Contig810.19.1|Name=mRNA_P-littoralis_Contig810.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=176bp|location=Sequence derived from alignment at P-littoralis_Contig810:91005..91180- (Pylaiella littoralis U1_48)
TTCGAAGAGCATCCAGAGATTATCGACAACATTTACAAATTTGTCTTGCA
GAAGTTTCACAACGTCCGTATGGGGGATTTCTCGCGCCGATTGAGTGAGA
ACTCCACGCTCAGGCTGTCGAAGGGCGAGTTAGCCCTGAGACAACAGCTA
AGAGCCACCAGTGCGAAGGGGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig810:91005..91180-

>mRNA_P-littoralis_Contig810.19.1 ID=mRNA_P-littoralis_Contig810.19.1|Name=mRNA_P-littoralis_Contig810.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig810:91005..91180- (Pylaiella littoralis U1_48)
TTCGAAGAGCATCCAGAGATTATCGACAACATTTACAAATTTGTCTTGCA
GAAGTTTCACAACGTCCGTATGGGGGATTTCTCGCGCCGATTGAGTGAGA
ACTCCACGCTCAGGCTGTCGAAGGGCGAGTTAGCCCTGAGACAACAGCTA
AGAGCCACCAGTGCGAAGGGGGCG
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