mRNA_P-littoralis_Contig810.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig810.17.1
Unique NamemRNA_P-littoralis_Contig810.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig810.17.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 4.910e-81
Identity = 144/200 (72.00%), Postives = 161/200 (80.50%), Query Frame = 1 
Query:    1 GVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAEGGGDKVWRKKDFLVDALLSIVGGSSEEGEGGRVDSGSGNGRVDVVGSGSVGEISKVRVSQDSSAGGEILEWTDALPLEDTEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLAGAHGSTRRELSFGHSDVAGETADSAVGETKG 600
            GVVAGSGTVT+EGL VE  RKMTK QLF LTKGTLVD IKA GG  KVWRKK+FLV+ALLS+ GGSSE+GEGG VD GSGNG V+V G G  G+IS V V++ S+ GGE LEW DA+PLE+  +SKLLQELA+  GEDDASLGDFDE+FL R ID +EVF SSPKSNLA A G TR ELSF  SDVAGETA S +GETKG
Sbjct:  291 GVVAGSGTVTNEGLAVETVRKMTKPQLFELTKGTLVDHIKAAGGDAKVWRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig810.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE4.910e-8172.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig810contigP-littoralis_Contig810:90259..90943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size686
Hectar predicted targeting categoryother localisation
Exons1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791665.6283844-CDS-P-littoralis_Contig810:90259..909431680791665.6283844-CDS-P-littoralis_Contig810:90259..90943Pylaiella littoralis U1_48CDSP-littoralis_Contig810 90260..90943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig810.17.1prot_P-littoralis_Contig810.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig810 90260..90943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig810.17.1

>prot_P-littoralis_Contig810.17.1 ID=prot_P-littoralis_Contig810.17.1|Name=mRNA_P-littoralis_Contig810.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
GVVAGSGTVTSEGLDVEMARKMTKSQLFALTKGTLVDLIKAEGGGDKVWR
KKDFLVDALLSIVGGSSEEGEGGRVDSGSGNGRVDVVGSGSVGEISKVRV
SQDSSAGGEILEWTDALPLEDTEVSKLLQELALGGGEDDASLGDFDEDFL
GRPIDLEEVFSSSPKSNLAGAHGSTRRELSFGHSDVAGETADSAVGETKG
RGSGFSALLVSNIVCLYLWCGIVCVWVT
back to top

mRNA from alignment at P-littoralis_Contig810:90259..90943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig810.17.1 ID=mRNA_P-littoralis_Contig810.17.1|Name=mRNA_P-littoralis_Contig810.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=685bp|location=Sequence derived from alignment at P-littoralis_Contig810:90259..90943- (Pylaiella littoralis U1_48)
GGTGTCGTGGCAGGCTCGGGTACTGTGACGAGTGAGGGCCTTGATGTTGA
GATGGCGAGAAAGATGACCAAGTCACAGTTGTTTGCACTGACCAAGGGCA
CACTAGTGGACCTTATAAAAGCTGAGGGTGGCGGCGACAAGGTGTGGAGA
AAGAAGGATTTTTTGGTCGACGCTTTGCTTAGCATTGTCGGCGGCTCTAG
CGAAGAAGGCGAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAG
TCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTCGAAAGTCAGGGTT
AGCCAGGACTCGTCGGCGGGCGGCGAAATTCTTGAATGGACCGATGCCTT
GCCGTTAGAGGATACCGAGGTGTCGAAGCTGCTGCAAGAATTGGCTCTGG
GGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGACGAAGATTTTTTG
GGTCGACCTATCGATCTTGAGGAGGTATTTTCGTCCTCGCCGAAATCGAA
CCTGGCGGGTGCCCACGGTTCAACGAGGAGAGAGCTATCCTTTGGCCACT
CCGATGTTGCGGGAGAGACAGCAGACTCTGCGGTGGGTGAAACCAAGGGA
CGAGGGTCAGGGTTTTCAGCCTTGCTGGTTTCGAATATCGTCTGCTTGTA
TCTGTGGTGCGGGATTGTTTGTGTCTGGGTGACAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig810:90259..90943-

>mRNA_P-littoralis_Contig810.17.1 ID=mRNA_P-littoralis_Contig810.17.1|Name=mRNA_P-littoralis_Contig810.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig810:90259..90943- (Pylaiella littoralis U1_48)
GGTGTCGTGGCAGGCTCGGGTACTGTGACGAGTGAGGGCCTTGATGTTGA
GATGGCGAGAAAGATGACCAAGTCACAGTTGTTTGCACTGACCAAGGGCA
CACTAGTGGACCTTATAAAAGCTGAGGGTGGCGGCGACAAGGTGTGGAGA
AAGAAGGATTTTTTGGTCGACGCTTTGCTTAGCATTGTCGGCGGCTCTAG
CGAAGAAGGCGAAGGAGGGCGGGTAGATAGTGGGTCGGGAAACGGGCGAG
TCGATGTGGTGGGGAGCGGCAGTGTTGGCGAAATTTCGAAAGTCAGGGTT
AGCCAGGACTCGTCGGCGGGCGGCGAAATTCTTGAATGGACCGATGCCTT
GCCGTTAGAGGATACCGAGGTGTCGAAGCTGCTGCAAGAATTGGCTCTGG
GGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGACGAAGATTTTTTG
GGTCGACCTATCGATCTTGAGGAGGTATTTTCGTCCTCGCCGAAATCGAA
CCTGGCGGGTGCCCACGGTTCAACGAGGAGAGAGCTATCCTTTGGCCACT
CCGATGTTGCGGGAGAGACAGCAGACTCTGCGGTGGGTGAAACCAAGGGA
CGAGGGTCAGGGTTTTCAGCCTTGCTGGTTTCGAATATCGTCTGCTTGTA
TCTGTGGTGCGGGATTGTTTGTGTCTGGGTGACA
back to top