mRNA_P-littoralis_Contig810.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig810.12.1
Unique NamemRNA_P-littoralis_Contig810.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 8.200e-61
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAI++ESF LHRDFVMNLQ
Sbjct:   19 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 119
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 6.940e-57
Identity = 122/274 (44.53%), Postives = 150/274 (54.74%), Query Frame = 2 
Query:   50 KATADQLLRKIMGGLMWILT*SLSQLVTAVSTGCNLFANEASERVFTAAIIQI*RLL*DLFIRFRFVPGRYDGRGAVSG*IWHEVTLFLMI*SGDFLSYSNMMMGSLRKSPYFC*LCFKFVYSVRHVMVLRAPLIFLCW---ILFFSHNNSR*TTGRRTDGW*VF*K*CRLYFSI-DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVM 859
            +A AD   R+++G LMW+ T +   +  AV       A+      + AA+  +  L                  GA+ G  W+                    +G  R S  +  +C         V  L +  + +C    + +FS    +  T   T+           Y +I DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKA ++ESF LHRDFV+
Sbjct:   64 EACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVH-WKAALGILGCLWMPTMXXXXXXXXXXXQDGALEGSTWY------------------FRVGLRRTSDVWGWVCDLVFEDAEEVRALXSGGLVMCGGGCVTWFS-RTQKCVTLSTTEAE---------YVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESFALHRDFVI 308
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 7.960e-55
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNL 865
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDN   IQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QH D LTKAI++ESF LHRDFVMNL
Sbjct:   69 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 8.380e-55
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISIT+V + +QHADFLTKAI++ESF LHRDFVMNLQ
Sbjct:  221 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNLQ 321
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.530e-54
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHV +++QHADFLTKAI++ESF LHRDFVMNLQ
Sbjct:  276 DVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNLQ 376
[Close]
BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.120e-53
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHV + +QHADFLTKAI++ES  LHRDFVMNLQ
Sbjct:  338 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNLQ 438
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BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.390e-53
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAI++ESF LHRDFVMNLQ
Sbjct: 1372 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 1472
[Close]
BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 6.200e-53
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFV 856
            DVLKEVLFLRQVWRFMLP  GMPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAI++ESF LHRDF 
Sbjct:  313 DVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFA 409
[Close]
BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.200e-52
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFM P A MPCIPVFEDNQGAIQI HNPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAI++ESF LHRDFVMNLQ
Sbjct:  679 DVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNLQ 779
[Close]
BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.810e-52
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  566 DVLKEVLFLRQVWRFMLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ 868
            DVLKEVLFLRQVWRFMLP AGMPCIPVFEDNQGAIQI +NPITNSNSKHIDVRHHFIRELVERKEISITHVTSE+QHADFLTKAI++ESF LHRDFVMN++
Sbjct:  728 DVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNMR 828
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig810.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE8.200e-6194.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE6.940e-5744.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE7.960e-5589.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE8.380e-5590.10Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE2.530e-5490.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE1.120e-5390.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHY5_9PHAE1.390e-5394.06Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE6.200e-5391.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE1.200e-5292.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE1.810e-5291.09Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig810contigP-littoralis_Contig810:73684..74554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog90675.XP_010506885.1
PFAMsPhyH
Model size871
Max annot lvl35493|Streptophyta
KEGG koko:K00477
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005623,GO:0005886,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016705,GO:0016706,GO:0044464,GO:0048244,GO:0051213,GO:0055114,GO:0071944
Exons1
Evalue2.39e-15
EggNOG OGsCOG2801@1|root,COG5285@1|root,KOG0017@2759|Eukaryota,KOG3290@2759|Eukaryota,37PY8@33090|Viridiplantae,3GG3P@35493|Streptophyta,3HYAG@3699|Brassicales
EC1.14.11.18
DescriptionPhytanoyl-CoA dioxygenase (PhyH)
Cds size261
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791665.5822973-CDS-P-littoralis_Contig810:73683..739441680791665.5822973-CDS-P-littoralis_Contig810:73683..73944Pylaiella littoralis U1_48CDSP-littoralis_Contig810 73684..73944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791665.6001575-UTR-P-littoralis_Contig810:73944..745541680791665.6001575-UTR-P-littoralis_Contig810:73944..74554Pylaiella littoralis U1_48UTRP-littoralis_Contig810 73945..74554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig810.12.1prot_P-littoralis_Contig810.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig810 73684..73944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig810.12.1

>prot_P-littoralis_Contig810.12.1 ID=prot_P-littoralis_Contig810.12.1|Name=mRNA_P-littoralis_Contig810.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLPTAGMPCIPVFEDNQGAIQIGHNPITNSNSKHIDVRHHFIRELVERKE
ISITHVTSEYQHADFLTKAINRESFELHRDFVMNLQ*
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mRNA from alignment at P-littoralis_Contig810:73684..74554-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig810.12.1 ID=mRNA_P-littoralis_Contig810.12.1|Name=mRNA_P-littoralis_Contig810.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=871bp|location=Sequence derived from alignment at P-littoralis_Contig810:73684..74554- (Pylaiella littoralis U1_48)
CGTTGGATAACTTTTTTTTCTTTCAGGGACTGCTTTTGAAATTAAATGTA
AAGCAACTGCTGATCAACTGCTCCGAAAAATCATGGGGGGGTTGATGTGG
ATCTTGACATAATCCCTCTCACAGCTAGTCACAGCAGTTAGTACAGGATG
TAATTTGTTTGCAAATGAGGCATCTGAACGCGTTTTCACTGCGGCAATAA
TTCAAATTTGAAGGTTGTTGTAGGATCTTTTCATTAGGTTCAGGTTCGTT
CCGGGACGCTACGACGGTAGGGGGGCCGTAAGCGGATGAATCTGGCATGA
AGTAACCCTGTTCCTCATGATATGAAGTGGAGATTTCCTTTCATATTCTA
ACATGATGATGGGCAGTCTACGAAAATCTCCGTACTTTTGTTGACTTTGT
TTTAAGTTTGTGTATTCCGTGCGGCATGTGATGGTGCTTCGTGCACCACT
GATATTTTTGTGTTGGATTCTGTTCTTCTCACACAATAATAGTCGGTAAA
CAACTGGTCGGAGAACTGATGGTTGGTGAGTTTTCTAGAAGTAGTGCCGT
TTGTATTTTTCGATTGATGTCTTGAAGGAAGTGTTGTTTTTGAGGCAGGT
TTGGCGTTTTATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCG
AGGACAACCAGGGTGCGATTCAGATCGGCCACAATCCAATCACCAACTCG
AACTCGAAGCACATAGACGTACGGCATCACTTTATCAGGGAACTGGTAGA
GAGGAAGGAGATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAG
ATTTCTTGACGAAAGCAATCAACAGGGAGTCTTTTGAACTGCACCGTGAT
TTTGTGATGAATTTGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig810:73684..74554-

>mRNA_P-littoralis_Contig810.12.1 ID=mRNA_P-littoralis_Contig810.12.1|Name=mRNA_P-littoralis_Contig810.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig810:73684..74554- (Pylaiella littoralis U1_48)
ATGTTGCCAACAGCGGGCATGCCTTGCATCCCAGTGTTCGAGGACAACCA
GGGTGCGATTCAGATCGGCCACAATCCAATCACCAACTCGAACTCGAAGC
ACATAGACGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAG
ATTTCGATCACACACGTGACGTCGGAATATCAGCATGCAGATTTCTTGAC
GAAAGCAATCAACAGGGAGTCTTTTGAACTGCACCGTGATTTTGTGATGA
ATTTGCAGTGA
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