mRNA_P-littoralis_Contig810.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig810.4.1
Unique NamemRNA_P-littoralis_Contig810.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig810.4.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 1.400e-74
Identity = 134/155 (86.45%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:   28 PPRDPEELDEMVKSVQAVLGGAGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEGRLPPQVASLNRGLRRAWKGKKGELDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDXXXXXXX----REVGVGGRGG-GADLETVRRVNQLVRQ 477
            PPRDPEEL+EMVKSVQAVLGG GEPGGLGEGFVEACLSVLGWSPQGVIEAVLE RLPPQVA+LNRGLRRAWKGKKG+LDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDD           REV VGG GG G+D ETVRRVNQLVRQ
Sbjct:  336 PPRDPEELEEMVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQAWREYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 490
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BLAST of mRNA_P-littoralis_Contig810.4.1 vs. uniprot
Match: A0A4D9DC10_9STRA (CUE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC10_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.690e-9
Identity = 54/154 (35.06%), Postives = 77/154 (50.00%), Query Frame = 1 
Query:   34 RDPEELDEMVKSVQAVLGGAGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEGR-LPPQVASLNRGLRRAWKG----KKGELDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDXXXXXXXREVGVGGRGGGADLETVRRVNQLVRQE 480
            R    ++ MV+ V+ V  G      LGEGFV ACL+V+G++   V+ A+LEG  LP  + +L+R L          KKG  +     D++  A +   L  MEK  E+DAYLL  EYDDD        +          D E +R+ N L+R+E
Sbjct:  415 RPARSVEAMVQEVRQVCPG------LGEGFVHACLAVMGYNINMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGREEAEEARDEEFIARQKAYLRQMEKDAEEDAYLLQ-EYDDDFDDQYAGEQTMFSRDTTREDFEAIRKYNNLMRKE 561
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BLAST of mRNA_P-littoralis_Contig810.4.1 vs. uniprot
Match: A0A7S2AVJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVJ1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.550e-7
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:  106 GLGEGFVEACLSVLGWSPQGVIEAVLEGRLPPQVASLNRGLRRAWKGKKG--ELDKAYRV-----DKDLAAAEAKRLIA-MEKRQEDDAYLLSREYDDD 378
            GLG GFVEA L    +S   V+ AVL+  LPPQ+  ++R L R    +K   ++D  Y V     D D+   + ++LI  M++ +ED+A++LSREYDDD
Sbjct:    1 GLGAGFVEAMLVFHDFSVARVVAAVLDDNLPPQLEGMDRKLGRYRVSRKDLKDIDAGYSVGSQARDDDVLREKQRQLIRNMDRDEEDNAWVLSREYDDD 99
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BLAST of mRNA_P-littoralis_Contig810.4.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.480e-5
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   37 DPEELDEMVKSVQAVLGGAGEPGGLGEGFVEACLSVLGWSPQ 162
            D + L  M+  VQ V GG  + GG+GEGFVEACLS++GWSPQ
Sbjct:  730 DADTLAAMIAEVQEVFGGPEQEGGVGEGFVEACLSLMGWSPQ 771
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig810.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE1.400e-7486.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DC10_9STRA7.690e-935.06CUE domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2AVJ1_9STRA2.550e-741.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBT6_9STRA2.480e-559.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig810contigP-littoralis_Contig810:18165..21680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog109478.XP_005869803.1
Preferred nameASCC2
PFAMsCUE
Model size840
Max annot lvl33208|Metazoa
KEGG koko:K18667
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0035510,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0099053,GO:1901360,GO:1903506,GO:2000112,GO:2001141
Exons5
Evalue0.000154
EggNOG OGsKOG4501@1|root,KOG4501@2759|Eukaryota,38GXB@33154|Opisthokonta,3BF9G@33208|Metazoa,3D1AF@33213|Bilateria,487A7@7711|Chordata,48YTG@7742|Vertebrata,3J6I7@40674|Mammalia,4KWI6@9397|Chiroptera
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.1
DescriptionActivating signal cointegrator 1 complex subunit 2
Cds size840
COG categoryK
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791664.9970014-CDS-P-littoralis_Contig810:18164..184771680791664.9970014-CDS-P-littoralis_Contig810:18164..18477Pylaiella littoralis U1_48CDSP-littoralis_Contig810 18165..18477 -
1680791665.016827-CDS-P-littoralis_Contig810:19350..194871680791665.016827-CDS-P-littoralis_Contig810:19350..19487Pylaiella littoralis U1_48CDSP-littoralis_Contig810 19351..19487 -
1680791665.030559-CDS-P-littoralis_Contig810:19980..201271680791665.030559-CDS-P-littoralis_Contig810:19980..20127Pylaiella littoralis U1_48CDSP-littoralis_Contig810 19981..20127 -
1680791665.0419776-CDS-P-littoralis_Contig810:21045..211261680791665.0419776-CDS-P-littoralis_Contig810:21045..21126Pylaiella littoralis U1_48CDSP-littoralis_Contig810 21046..21126 -
1680791665.0534751-CDS-P-littoralis_Contig810:21518..216801680791665.0534751-CDS-P-littoralis_Contig810:21518..21680Pylaiella littoralis U1_48CDSP-littoralis_Contig810 21519..21680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig810.4.1prot_P-littoralis_Contig810.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig810 18165..21680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig810.4.1

>prot_P-littoralis_Contig810.4.1 ID=prot_P-littoralis_Contig810.4.1|Name=mRNA_P-littoralis_Contig810.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=280bp
GDAGGGGGNPPRDPEELDEMVKSVQAVLGGAGEPGGLGEGFVEACLSVLG
WSPQGVIEAVLEGRLPPQVASLNRGLRRAWKGKKGELDKAYRVDKDLAAA
EAKRLIAMEKRQEDDAYLLSREYDDDYDDQYDDREVGVGGRGGGADLETV
RRVNQLVRQEEEEDAWWENNKNNNLSVAAPKGGGWRARAHRDAEEEDAQG
GGEDGASSATAGGRGGGGRGAGGGGRGRSGGRENSRGRGGGGGGGGGRTG
GKERGRGGGRGGRGSRGGQGDGGGGRGGGG
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mRNA from alignment at P-littoralis_Contig810:18165..21680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig810.4.1 ID=mRNA_P-littoralis_Contig810.4.1|Name=mRNA_P-littoralis_Contig810.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3516bp|location=Sequence derived from alignment at P-littoralis_Contig810:18165..21680- (Pylaiella littoralis U1_48)
GGGGATGCGGGTGGTGGGGGGGGTAACCCGCCTCGAGATCCGGAGGAGTT
GGACGAAATGGTCAAGAGTGTCCAAGCCGTGCTGGGAGGAGCCGGGGAGC
CCGGGGGGCTGGGGGAAGGGTTTGTGGAGGCGTGTCTGTCGGTTCTGGGC
TGGTCGCCTCAGGTGAGATGTATCGCCGGGGAGCGGGTGGCAGTTAGCGA
TTTGTTTGTTTGTTTGTTTGTTTGTGATTTTTAGTTTTTGGCGAGACATA
TTCGTTTCGTGATCATCGACGGAAGCAGGGGCGGCCGTGAGGGGGGACAC
GAGAGGTTTTGTCCGATACATACCAAATCGCTTTTGTCGTGTGGAAGTAT
GCTTGCCTTTCGCGGCAGGCGAGAGCGAGGGCGAGGGGAGGGGCGGCGGG
AGGTTGTCCGGTATCTCCGCGTCACAGACCCGCCGTTGTTTGTGGATTTT
CCCGGCGTCTGCTGCTGTGCCGCCCGGCCTTTTTTTGTTTGTCTTACTGA
TTCTTGGTCTTGATCTTGATCGTGCTCGCCGCCGCGCGTACTTCGCTCGC
CCAGGGAGTTATCGAGGCTGTCCTGGAGGGCCGGTTGCCGCCACAAGTTG
CCAGCCTGAATCGCGGGCTGCGTCGGGCGTGGAAGGTAAGACATCGGTGG
CGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATTATTTTCG
CAGACGTATGTCGTCCCCCCAACAGCAACCTTTGAGAGCTTTGGCAAACG
AACCTACGTTATCGTACCCTTATACGCGAGTCGCACCCCTCCCTGTTCGT
AATTTTAGGCTTTATGCATACCTCCCAACACACGTGATGAAGAATCACTT
TTTTATGACAAATGCTTTCTGTCCTGTCCTTGGTGCGTACAGACCCCGTT
TTATGCAAGGCTTCATACATGCTTCATTCACCTTCAAAAGGAAATAAAAA
GGACAAATGATTTTCGTTGGCTGGGCCACGCAGGTCTTCGGCTAGGAGTA
GGGAAATATTACTGTTGTGACGTGGTTGTTTATGACCCCTCTCCCGCCAC
CTGTGCCGGGTGAGAGACTGGAGTTTTTCCAACGAGGTTGTTATTTGACC
GGGAGCGTGTCCTGTTGAAATATATATGTTTGCTCGGAGGCAGGGGGCGG
GGTGCGTAGTCTCGCTTCACCGCTGTCACGTCATGTCGTGGCCTCCCTTG
GTCGTGTTAACCATGACCATTCCCCCCCGAACGACAGCCGTCAACAAGAA
TGCAGTGCAGACATAACGCAGGACAGGACTTTTACACCTATGACACTCTC
TCGAGTATCCTACAAACACCACGCAGATGCCATGCAGGGCAGGGTACGTA
AGTGACAGAAAGCAGTTCAGGACAACATTCATGTAGTTGTATGATACACA
AACTTTCGAATTGTACTGACATGTCATACGAAGCACGAAGTACTTTACGA
AGCACGAAGTGCTTCTTATATTAAGTCTCGCTTGTACTTGCACGTTTTTG
TTTGATTTTCCTCGGGCATGTTTTGATTTTTCTTTTTTGTTGTTTTACTG
CAGGGGAAGAAGGGAGAGCTGGACAAGGCCTACCGCGTGGACAAGGATTT
GGCAGCCGCCGAGGCGAAACGACTGATTGCCATGGAGAAGCGACAAGAGG
ACGACGCGTATCTTCTCTCCAGGGAGTACGACGATGACTACGATGATCAG
GTCTGTGCCTGCTTGTTACACATACCATCTTTGTGTGTGTGTTGGCGGCG
GCCACACGTCGGCCACGCAACGTAGGAATCGCGCTGAGTGTACGTGTGTG
TGTTGGCGGCGGCCAAACAACGGTCACGCAACGTCGAGATCGCGCTGTTT
TGTTCATTAATTCATCATTGTTGTCTTTTGAACGAGAGTAACCGCTCCAA
GCCTCTCGATGACGGCGACCTACGCGTGGGCCGTGCCGCAGCAGCAGTCC
ATAATGATAGGGCAAACGAAAATACTCTGAGTGTAATACGACGACTGATG
TATAAAAAATAAATATTATACTAAGTATATATACGGTCTTCCTCGGCAAA
AAGACGACTCGATCTTCGTGTCTTGCTCTCCCACTTCTATGATACCTGTG
TCCTATTGTATTTTAATCCAGCGCGTCGCCCGCTGCCGTTCAGATTTTCA
CCTAGACATTATCTTGCGCTCTCCCGCAACAAACGATTTCTAGTACGACG
ATCGCGAGGTGGGCGTTGGGGGCAGGGGCGGGGGGGCCGACTTGGAGACG
GTGAGGAGGGTCAACCAGCTCGTGCGGCAGGAGGAAGAGGAGGACGCTTG
GTGGGAGAACAACAAGAACAACAACCTTAGGTCGGTCACGCAGTTGGACC
GTTGACCTCTGCCTTTCTCCCGGAAGAATTAGCTCTATCAACTCTAGTCA
TGCGGTGTTGAATGAGTTAGCGCACGTGAACTTTTTATTATTGATAACAT
GTCGTCCTGCTGTACAGTCGGAACTCGAGTCAACGTGCGGTCTGTTGTTG
TTGTTGCTGTTGTTGTTGTTATTGTTTTTGGTGGTGGTGGTGGTGGTGGT
GTTGTTGTTTTGGTGTTGTCGTTGTTGGTGTTGTTGTCGCTGTTGGTGTT
GTTGTCGCTGTTGTTGTCGTTGTTCGTGTTGTTGTCGTTGTTGTTGTTTT
TGGTGGTGGTGGTGGTGTTGCTGTTGTTGGTGTTGTCGTTGTTGTTGGTG
TTGTCGTTGTTGGTGGTGTTGCTGTTGTTGGTGTTGTCGTTGTTGTTGGT
GTTGTCGTTGGTGTTGGTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTG
TTGTTGTTGTTGTTGTTTTGGTGTTGTTGTTGCTGCTGCTGCTGTTATCG
TTGTCGTTTTTCTGGTGGTGTTGGTGTAGGTGTTGGTGTTGTTCCTACCG
TGCCCTCGTTGTTTTCGAGGGCCAAGGATTTTGTTTGCGGCGTGCGTTCC
ATTTTCAAAAGCATTTTCGAGTGCTCGATGGAAATGAAAATAAGCAATGG
ATAGTACGAGTGGCAGTGGTTGTACCGTCAGTACCGTCTAACACGCGACG
CGGCACGACGAGAAACGCTCATGCAGAAAAAGGAAAATCCCCCCTCCCTC
CCTCCCTCCCTCCCTCTCGTCCTCCCTCCCTTTCTTCCTACCTCCGCACG
CAGTGTTGCCGCTCCGAAAGGCGGAGGTTGGCGAGCAAGAGCCCACAGAG
ACGCGGAGGAAGAAGACGCTCAAGGTGGAGGAGAAGACGGAGCTTCTTCC
GCCACTGCTGGCGGAAGAGGCGGCGGCGGTCGAGGAGCGGGGGGCGGGGG
TAGGGGCAGGAGTGGCGGTAGAGAAAACAGCCGCGGCCGTGGCGGCGGTG
GCGGCGGTGGCGGCGGCAGAACTGGGGGCAAGGAGAGAGGGAGAGGGGGG
GGAAGGGGAGGCCGCGGTAGTAGAGGGGGGCAGGGTGACGGGGGCGGCGG
GAGGGGCGGCGGTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig810:18165..21680-

>mRNA_P-littoralis_Contig810.4.1 ID=mRNA_P-littoralis_Contig810.4.1|Name=mRNA_P-littoralis_Contig810.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=840bp|location=Sequence derived from alignment at P-littoralis_Contig810:18165..21680- (Pylaiella littoralis U1_48)
GGGGATGCGGGTGGTGGGGGGGGTAACCCGCCTCGAGATCCGGAGGAGTT
GGACGAAATGGTCAAGAGTGTCCAAGCCGTGCTGGGAGGAGCCGGGGAGC
CCGGGGGGCTGGGGGAAGGGTTTGTGGAGGCGTGTCTGTCGGTTCTGGGC
TGGTCGCCTCAGGGAGTTATCGAGGCTGTCCTGGAGGGCCGGTTGCCGCC
ACAAGTTGCCAGCCTGAATCGCGGGCTGCGTCGGGCGTGGAAGGGGAAGA
AGGGAGAGCTGGACAAGGCCTACCGCGTGGACAAGGATTTGGCAGCCGCC
GAGGCGAAACGACTGATTGCCATGGAGAAGCGACAAGAGGACGACGCGTA
TCTTCTCTCCAGGGAGTACGACGATGACTACGATGATCAGTACGACGATC
GCGAGGTGGGCGTTGGGGGCAGGGGCGGGGGGGCCGACTTGGAGACGGTG
AGGAGGGTCAACCAGCTCGTGCGGCAGGAGGAAGAGGAGGACGCTTGGTG
GGAGAACAACAAGAACAACAACCTTAGTGTTGCCGCTCCGAAAGGCGGAG
GTTGGCGAGCAAGAGCCCACAGAGACGCGGAGGAAGAAGACGCTCAAGGT
GGAGGAGAAGACGGAGCTTCTTCCGCCACTGCTGGCGGAAGAGGCGGCGG
CGGTCGAGGAGCGGGGGGCGGGGGTAGGGGCAGGAGTGGCGGTAGAGAAA
ACAGCCGCGGCCGTGGCGGCGGTGGCGGCGGTGGCGGCGGCAGAACTGGG
GGCAAGGAGAGAGGGAGAGGGGGGGGAAGGGGAGGCCGCGGTAGTAGAGG
GGGGCAGGGTGACGGGGGCGGCGGGAGGGGCGGCGGTGGC
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