mRNA_P-littoralis_Contig810.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig810.15.1
Unique NamemRNA_P-littoralis_Contig810.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig810.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig810contigP-littoralis_Contig810:78993..79442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791664.8062737-UTR-P-littoralis_Contig810:78992..791301680791664.8062737-UTR-P-littoralis_Contig810:78992..79130Pylaiella littoralis U1_48UTRP-littoralis_Contig810 78993..79130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791664.8164902-CDS-P-littoralis_Contig810:79130..794421680791664.8164902-CDS-P-littoralis_Contig810:79130..79442Pylaiella littoralis U1_48CDSP-littoralis_Contig810 79131..79442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig810.15.1prot_P-littoralis_Contig810.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig810 79131..79442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig810.15.1

>prot_P-littoralis_Contig810.15.1 ID=prot_P-littoralis_Contig810.15.1|Name=mRNA_P-littoralis_Contig810.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MPCLHVCVVNICGSVDITVCGLTTYLHTPLKDLKHDNRLWSCSSAVTLRC
RNQRRRGSEAGIGDFEERTQAARAGIAEGAAAGGGLYNARDWQRECQESE
TTG*
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mRNA from alignment at P-littoralis_Contig810:78993..79442-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig810.15.1 ID=mRNA_P-littoralis_Contig810.15.1|Name=mRNA_P-littoralis_Contig810.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=450bp|location=Sequence derived from alignment at P-littoralis_Contig810:78993..79442- (Pylaiella littoralis U1_48)
ATGCCCTGTCTTCACGTGTGCGTGGTTAATATATGTGGTTCGGTGGACAT
CACGGTGTGTGGGTTAACGACGTACCTTCATACACCGCTTAAGGATCTCA
AACACGATAATCGTCTTTGGAGCTGCAGCTCCGCGGTGACACTGCGATGT
CGGAACCAACGTCGAAGAGGGTCTGAGGCTGGAATTGGAGACTTCGAGGA
GAGAACTCAGGCTGCACGGGCTGGAATTGCCGAGGGTGCAGCAGCTGGTG
GTGGGTTGTATAATGCCAGGGATTGGCAGAGAGAGTGTCAGGAGAGTGAA
ACTACAGGTTGAACAGACGGGCTGGAATTGCCGAGGGTGCAGCAGCTGGT
GGTGGGTTGTATAATGCCAGGGGATTTGCAGAGAGAGTGTGAGGAAATTA
TTGATAAATAATGCCAGGGGATTGGCAGAGGGGGAGAGTGAAAGGTCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig810:78993..79442-

>mRNA_P-littoralis_Contig810.15.1 ID=mRNA_P-littoralis_Contig810.15.1|Name=mRNA_P-littoralis_Contig810.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig810:78993..79442- (Pylaiella littoralis U1_48)
ATGCCCTGTCTTCACGTGTGCGTGGTTAATATATGTGGTTCGGTGGACAT
CACGGTGTGTGGGTTAACGACGTACCTTCATACACCGCTTAAGGATCTCA
AACACGATAATCGTCTTTGGAGCTGCAGCTCCGCGGTGACACTGCGATGT
CGGAACCAACGTCGAAGAGGGTCTGAGGCTGGAATTGGAGACTTCGAGGA
GAGAACTCAGGCTGCACGGGCTGGAATTGCCGAGGGTGCAGCAGCTGGTG
GTGGGTTGTATAATGCCAGGGATTGGCAGAGAGAGTGTCAGGAGAGTGAA
ACTACAGGTTGA
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