mRNA_P-littoralis_Contig81.172.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.172.1
Unique NamemRNA_P-littoralis_Contig81.172.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: D7FJC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC5_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 7.780e-119
Identity = 170/194 (87.63%), Postives = 181/194 (93.30%), Query Frame = 1 
Query:  262 ELNVGGGDGGEGEFYTPADLKAYSKPWGITLHYRGTLNTYRIEAHRANGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDRLTWGAEGTLMTASAEDFMRRWTTLMLNTN 843
            +LN     GGE +FYTPADL AYSKPWGITLHYRGTLNTYRIEAHR NGEVAGYTTGFYLGDLLHLDKVQIQRKESAYE GAPNAPAPGTRDLPWA KTGNLFQLGAVLGCAAVRYG+DRGAR+VELLAIR+N++QHSRLVRYYRIAGF+AER+VGEDLGSLRDRLTWGAEGTLM ASA+DFMRRWT+LM  TN
Sbjct:   95 DLNARADSGGEEKFYTPADLAAYSKPWGITLHYRGTLNTYRIEAHRPNGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEAGAPNAPAPGTRDLPWAEKTGNLFQLGAVLGCAAVRYGWDRGARRVELLAIRDNDKQHSRLVRYYRIAGFKAERKVGEDLGSLRDRLTWGAEGTLMAASADDFMRRWTSLMQETN 288
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: W7TRS1_9STRA (Acyl-CoA N-acyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRS1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.090e-23
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 1 
Query:  289 GEGEFYTPADLKAYSKPWGITLHYRGTLNTYRIEAHRANG----EVAGYTTGFYLG--DLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDRLTWGAEGTLMTASAEDFMRRWTTLMLN 837
            G+    T A+++A +  +GI L        YRI A   N     E  GYT+GF      L+HLD +Q++R+      G+   P                +  G +LG AA+RY YD+G  K ELLAI ++E+ H  L+ +YR AGF + +EV  DL  + D L WG  GT M    E+++RRW T++++
Sbjct:   57 GKEPLVTQAEIEACAAAFGIQLRLSTLGPFYRIIARLTNDKEGVEPIGYTSGFVAPFFKLVHLDTMQVRRRYWKQLDGSNRFP----------------YGCGLLLGAAAMRYAYDKGCSKAELLAINDDEKSHRLLLGFYRTAGFVSVKEVTNDLRCVPDLLVWGGVGTRMDMPVEEYLRRWRTVIVS 229
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A068TMQ6_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068TMQ6_COFCA)

HSP 1 Score: 96.7 bits (239), Expect = 8.160e-21
Identity = 60/177 (33.90%), Postives = 85/177 (48.02%), Query Frame = 1 
Query:  313 ADLKAYSKPWGITLHYRGTLNTYRIEAHRAN-----GEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREV-GEDLGSLRDRLTWGAEGTLMTASAEDFMRRWTT 825
            AD+   SK   + LH +     +RI A         G   G    +  G +LHLD ++++RK    E                     ++F +G  +G  A+RYGYD G +K ELLAI + +  HS+LVR+Y+  GF++  EV G   G L D L WG  GT M A  E+ M +W T
Sbjct:    2 ADIIEASKRQNLDLHIQSLGPFFRITAKSLKTGNELGRAEGLVRLWLGGKILHLDSIKLRRKTLEMEK--------------------SIFGIGLYVGAVAIRYGYDCGCKKAELLAINDTDLYHSKLVRFYKRIGFRSAYEVTGSSFGDLADMLVWGGIGTRMDADIEELMIKWCT 158
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: L1J4V3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J4V3_GUITC)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-20
Identity = 53/141 (37.59%), Postives = 84/141 (59.57%), Query Frame = 1 
Query:  406 GEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAP----GTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDRLTWGAEGTLMTASAEDFMRR 816
            G+  GYT G  +G+L+  D +++    S    G PN+          +  W  ++ +++ L  +LG  A RY Y++G R+ ELLAI++NERQH  L R+YR  GF+A ++V +D+  + DR+ WG  GTLM AS E+ +R+
Sbjct:  103 GQAIGYTAGTIVGNLMRQDTMRL----STVNTGNPNSMTDRKKVSVNERGW--RSNSVYGLSLLLGAYAGRYAYEQGCRRAELLAIKDNERQHKILERHYRRLGFRAVKDVTDDITCVGDRMIWGGIGTLMEASVEEMLRK 237
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A1Z5KB50_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB50_FISSO)

HSP 1 Score: 97.4 bits (241), Expect = 1.530e-20
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:  319 LKAYSKPWGITLHYRGTLNTYRIEAHRANG--EVAGYTTGFYL-GDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDRLTWGAEGTLMTASAEDFMRRWTTLMLNTNN 846
            L+ Y++  GI L +      YR  A   +   +V GY  G      LLHLDK+++      + P    A A    + P     G    +G ++G   + +G + G +K E LAI + E+QH RLVRYYR AGFQ  + VG+D+  + DRL WG  GTL+ A+ ++ ++ WT LM  +++
Sbjct:   49 LEDYAQRQGIVLTFTTLGPAYRCIARSQHNTTQVLGYVEGILRPSPLLHLDKMEV------FRPMVQRARA----ENPAFTGGGVSLGVGLLMGYLCLLHGQENGCKKAEFLAIDDEEKQHKRLVRYYRHAGFQFIKYVGDDIWDVPDRLVWGGCGTLLGANIDELLQFWTRLMQKSDD 217
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A7S3LDP4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDP4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.740e-19
Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 1 
Query:  283 DGGEGEFYTPADLKAYSKPWGITLHYRGTLNTYRIEAHRANGE--VAGYTTGFY--LGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQ-LGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDRLTWGAEGTLMTASAEDFMRRWTTLM 831
            D  +   +T   L+ Y+   G+ L        YR  A   + +  + GY  GF    G+LLH+DK+++ RK    +  A N         P   K G  F  +G ++G   + +G ++G ++ E LAI + +RQH RLVRYY+ AGF   + VG+DL  + DR+ WG  GTL+       +  WT LM
Sbjct:   63 DAADTTIWTREHLEDYASEQGVVLSLTTLGPAYRAIARPKHNQTLILGYVEGFVRPTGNLLHVDKMEVFRK-IVKQSRAEN---------PQEFKGGGTFLGVGLLMGFLCMLHGQEKGCKEAEFLAIDDEDRQHKRLVRYYKTAGFDFIKYVGDDLKDIPDRMVWGGCGTLLRKDISYLLSYWTQLM 240
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: UPI0010A47D4F (uncharacterized protein LOC114725382 isoform X1 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A47D4F)

HSP 1 Score: 90.9 bits (224), Expect = 3.430e-18
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1 
Query:  313 ADLKAYSKPWGITLHYRGTLNTYRI-----EAHRANGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREV-GEDLGSLRDRLTWGAEGTLMTASAEDFMRRW 819
            +D+   S+   + L  R     +RI     E+    G   G    +  G +LHLD +++QR+    E                     ++F +G  +G  A+RYGYD G +K ELLAI +++  HS+LVR+Y   GF+A  EV G  +G L   L WG  GT M A+ ED M +W
Sbjct:   49 SDILEASRAQKLDLQLRTVGPFFRITAKSLESQNEVGRAEGIIRVWLGGRILHLDSMKLQRETIGMEK--------------------SIFGIGLFIGALAIRYGYDCGCKKAELLAINDSDLYHSKLVRFYSRIGFKAVHEVSGSSVGDLGHMLMWGGIGTRMDANIEDLMIKW 203
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A2R6Q5V8_ACTCC (Polycomb group protein like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q5V8_ACTCC)

HSP 1 Score: 90.9 bits (224), Expect = 4.420e-18
Identity = 58/180 (32.22%), Postives = 85/180 (47.22%), Query Frame = 1 
Query:  298 EFYTPADLKAYSKPWGITLHYRGTLNTYRI-----EAHRANGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREV-GEDLGSLRDRLTWGAEGTLMTASAEDFMRRW 819
            EF T +D+   SK   I L  +     +RI     E  R  G   G    +  G +LHLD ++++R+    E                     ++F +G  +G  A+RYGY+ G  K ELLAI +++  HS+LVR+Y   GF+A  EV G  +  L   L WG  GT M A+  D + +W
Sbjct:   56 EFPTMSDITEASKSQKIDLRLQSLGPFFRITAKSLETERELGRAEGVIRVWLGGKILHLDSIKLRRETLGMER--------------------SIFGIGLFIGAVAIRYGYECGCGKAELLAINDSDLYHSKLVRFYNRIGFKAVHEVTGSSMADLAHMLVWGGVGTRMDATISDLLVKW 215
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A834G650_RHOSS (IFRD domain-containing protein n=2 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834G650_RHOSS)

HSP 1 Score: 92.0 bits (227), Expect = 4.290e-17
Identity = 59/179 (32.96%), Postives = 88/179 (49.16%), Query Frame = 1 
Query:  301 FYTPADLKAYSKPWGITLHYRGTLNTYRI-----EAHRANGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREV-GEDLGSLRDRLTWGAEGTLMTASAEDFMRRW 819
            F T +++   SK   I L  R     +RI     E  +  G   G    +  G +LHLD ++++R+    E                     ++F +G  +G  AVRYGYD G  K ELLAI +++  HS+LV++Y+  GF+A REV G  LG L   L WG  GT M A+  + +R++
Sbjct:   70 FPTMSEIMEASKSQKIGLEIRSVGPFFRITAKSLETRKELGRAEGLVRVWLGGKILHLDSIRLRRETLGMER--------------------SIFGIGLFVGAVAVRYGYDCGCGKAELLAINDSDLYHSKLVKFYKRIGFRAVREVTGSSLGDLSHMLVWGGIGTRMDANISELLRKY 228
[Close]
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Match: A0A218X2I3_PUNGR (uncharacterized protein LOC116194462 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A218X2I3_PUNGR)

HSP 1 Score: 87.4 bits (215), Expect = 6.570e-17
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 1 
Query:  283 DGGEGEFYTPADLKAYSKPWGITLHYRGTLNTYRIEAH-----RANGEVAGYTTGFYLGDLLHLDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVRYGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREV-GEDLGSLRDRLTWGAEGTLMTASAEDFMRRW 819
            +GG     T  D+ A S+   + L        +RI A      R  G   G    +  G +LHLD ++++R+    E                     ++F +G  +G  A+RYG+D G RK ELLAI +++  HS+LVR+Y   GF+A  EV G  +G L   L WG  GT M A  ++ + +W
Sbjct:   39 NGGSISVPTMDDILAASRAQKLDLQLSKLGPFFRITARGSETGRELGRFEGMIRVWAGGRILHLDSIRLRRETLGMEK--------------------SIFGIGVFIGAVAIRYGFDCGCRKAELLAINDSDLYHSKLVRFYTRLGFKAVHEVTGSTMGDLAHMLVWGGVGTRMDADIDELLVKW 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC5_ECTSI7.780e-11987.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TRS1_9STRA1.090e-2334.92Acyl-CoA N-acyltransferase n=2 Tax=Monodopsidaceae... [more]
A0A068TMQ6_COFCA8.160e-2133.90Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
L1J4V3_GUITC1.480e-2037.59Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A1Z5KB50_FISSO1.530e-2034.64Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3LDP4_9STRA2.740e-1932.98Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI0010A47D4F3.430e-1833.14uncharacterized protein LOC114725382 isoform X1 n=... [more]
A0A2R6Q5V8_ACTCC4.420e-1832.22Polycomb group protein like n=2 Tax=Actinidia TaxI... [more]
A0A834G650_RHOSS4.290e-1732.96IFRD domain-containing protein n=2 Tax=Rhododendro... [more]
A0A218X2I3_PUNGR6.570e-1731.35uncharacterized protein LOC116194462 n=3 Tax=Punic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:607536..611429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJC5
PFAMsIMS,IMS_C
Model size900
Max annot lvl2759|Eukaryota
KEGG koko:K03511
KEGG Pathwayko03460,ko05200,ko05202,ko05210,ko05212,ko05213,ko05214,ko05216,ko05217,ko05218,ko05220,ko05222,ko05223,ko05224,ko05225,ko05226,map03460,map05200,map05202,map05210,map05212,map05213,map05214,map05216,map05217,map05218,map05220,map05222,map05223,map05224,map05225,map05226
Hectar predicted targeting categorychloroplast
Exons3
Evalue1.18e-119
EggNOG OGsCOG0389@1|root,KOG2094@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_005820.1
EC2.7.7.7
DescriptionDNA-directed DNA polymerase activity
Cds size894
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791664.535646-UTR-P-littoralis_Contig81:607535..6075411680791664.535646-UTR-P-littoralis_Contig81:607535..607541Pylaiella littoralis U1_48UTRP-littoralis_Contig81 607536..607541 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791664.5514727-CDS-P-littoralis_Contig81:607541..6080061680791664.5514727-CDS-P-littoralis_Contig81:607541..608006Pylaiella littoralis U1_48CDSP-littoralis_Contig81 607542..608006 +
1680791664.5643518-CDS-P-littoralis_Contig81:609938..6101441680791664.5643518-CDS-P-littoralis_Contig81:609938..610144Pylaiella littoralis U1_48CDSP-littoralis_Contig81 609939..610144 +
1680791664.5761392-CDS-P-littoralis_Contig81:611206..6114291680791664.5761392-CDS-P-littoralis_Contig81:611206..611429Pylaiella littoralis U1_48CDSP-littoralis_Contig81 611207..611429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.172.1prot_P-littoralis_Contig81.172.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 607542..611429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.172.1

>prot_P-littoralis_Contig81.172.1 ID=prot_P-littoralis_Contig81.172.1|Name=mRNA_P-littoralis_Contig81.172.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=298bp
MLYLTVATLLATVVSFNAPTISFKPNNVRRTCSSFANPASSMNSNNSGNS
GSHQRRTAAAATTPTLRDCSAATLPQRRGGGGSSFELNVGGGDGGEGEFY
TPADLKAYSKPWGITLHYRGTLNTYRIEAHRANGEVAGYTTGFYLGDLLH
LDKVQIQRKESAYEPGAPNAPAPGTRDLPWAAKTGNLFQLGAVLGCAAVR
YGYDRGARKVELLAIRENERQHSRLVRYYRIAGFQAEREVGEDLGSLRDR
LTWGAEGTLMTASAEDFMRRWTTLMLNTNNGGEGSASDAAAVQKQEA*
back to top

mRNA from alignment at P-littoralis_Contig81:607536..611429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.172.1 ID=mRNA_P-littoralis_Contig81.172.1|Name=mRNA_P-littoralis_Contig81.172.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3894bp|location=Sequence derived from alignment at P-littoralis_Contig81:607536..611429+ (Pylaiella littoralis U1_48)
AGAACTATGCTGTACCTGACGGTGGCCACCTTGTTGGCTACCGTCGTGTC
TTTCAATGCGCCAACGATCAGCTTCAAACCCAACAATGTTCGCAGGACTT
GTTCTTCCTTCGCTAATCCTGCGTCAAGCATGAACAGCAACAACAGCGGC
AACTCTGGCTCGCATCAGCGAAGAACAGCCGCAGCGGCGACAACACCAAC
TCTCCGAGATTGTTCTGCTGCTACGTTGCCGCAACGCCGTGGTGGTGGTG
GTAGTTCGTTCGAATTAAACGTTGGGGGTGGAGATGGCGGCGAGGGAGAG
TTCTATACCCCGGCAGATTTGAAGGCGTACAGCAAGCCCTGGGGCATCAC
GCTGCACTACCGTGGCACCCTCAACACGTACCGTATCGAGGCGCACCGGG
CGAACGGCGAGGTCGCCGGGTATACCACGGGCTTTTACCTTGGAGATCTC
CTGCATCTGGACAAAGTGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTATGTTTGTGCG
TGTTTGTGTGTGTGTTGTTGTTGTTGATTCTCACATTAACTCACTACCGC
CGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGGAA
AAAATAAAAATAAAATAAATGGACTATGATCACCCACAGTCAAATCAGAT
ATGGTACCGAGATATGGTACCGCTGGGGTACCATATGTGGTGGCCAAAGT
ACCAAACAAATACAGAAAAACAAATAACAGGTTCGAAAGAAGAAACAAAA
ATTGGAAACAGTACGACAAACAAAAAATAACCAAGACAAACCTCAACCAT
AACCATATACTTCGAAGTACTTCGTACATCGAGCCAAGGCCCAGGGCCAT
TACAGACCAAGGCAAAGGCAAACCAGGGCGATGGTCCAGTAACTATATGA
TCATTAGACGAAAGACAAAAAAAATAAAAAACAAGATACAGGGAGGGCAC
AAAGACTGAGGGAGTGCACTCGTACACAAACACAACAAACAGGCCGCCAA
ACAAAGAGGAAGCAGGGGAACGAAAGGGAAAAGAAAAAAAAGAGACAAAG
AGGAACAAAATACATACATGAAGAGTGCAGAGGGAAGACCGGAAGTACCG
GAAGTCGGGGGGGGGGGGGTGATAAAAAATAAAGTAAAAGGCATGCAATC
AATCGCAAACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCC
TCAGTCGCACTCATGCCTTCTGCTACTGGCCCCACCGTACCCAGTCGTTT
CTGCCCCACATCTTTGGCAGCAGCTATACCACCATTCCGCCCAACAGGTT
TTCCACTCCGGCCACCCCGTAGCTTGGCTTTGGGCTGCTTCTTCTTGTGC
TGTGCAACTCCAACCCCACTACCCCGCTGTCCTTGTGCCCCCCCGTACTC
CTCCTCTCGTTTACCCCCGCCATCCGTTCTCCCTCTTTTGGCCAAGGCCT
GCCCCTCTGCCGCGTCCCTCTCCCTTTTCCGTCGACGTGTCTCTGGTAAG
TCTCCCTCTTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTC
GATCCTGTCGTACCACTCGTCAGCTCTCTTGGCACTTGCCTCCCACCCCT
CTTTTTTGTCGACCACGATGTCGAACGCTTCGAGGTCCTCCTGTATTCGC
CTCAGCCAGTCAAACTCTTGCCCCCCCAGATGCCTCGCTCCCCCCTGCAA
TTCTCCCACAAGAGCAATTTTCGGGAGTCTCTCGTCTCTCATGCGCGCAA
CGAATCTTGCACAGTCGCCGCTTGCGCACGGTGGCCTCAATGCTCTCGTC
GCAACCCGCGGTGATCAGGGCTTTGGCGTAGGAGAGAGGTCGGTCTGTTC
TCTCTGTGTGTGTGTGTGTGTGCGCGCGCGCAAAGTGTGTGCAAGTGTGT
GTGTGCAAAGTGTGTGCAAGTGTGTGTGCAAGTGTGTGCAAGTGTGTGTA
AGTGCGGGCAAGTGTTTCTGTCTGTCTTTGTGTCTCGATGTCTGTTCCTG
TGTTACTCTTGGTCAGTTTCACCGGCTCTACATCGTACTTCCAAGAACAT
GAAACGGCAGTAGTACGACTTGTCCACGTAACACGGAAGCATGATACATC
GAACGGTGTAGCGTGCCGAAATATGACCCGCCCTCTCCGTCTGGAACGTA
ACCGTGAGAAATGGCCAAGTATCGTAGCTCTCAGGCAAGCAACAATGAAT
TAACCCCCTCGCCTCTGGTCTCGAACACTTTTGACCAACTCCGCCTGCCA
CAGATTCAGCGAAAGGAATCTGCGTACGAACCCGGGGCACCGAACGCCCC
AGCCCCCGGCACCCGCGACCTTCCGTGGGCGGCCAAAACGGGCAACCTGT
TTCAGCTCGGCGCGGTTCTGGGGTGCGCGGCAGTGCGGTATGGCTATGAT
AGGGGCGCGAGGAAAGTCGAGCTTCTGGCCATTCGCGAGAACGAAAGGCA
ACATAGCAGGTGGGACAGGGAGGGAAAAAAGTTGCGTTTTATGTTTTCCT
TGCCTCATCCATCCCTCTGTACTGGTACACGCTTTTTGCGTTTCATACGA
GATGTTATAATGAACGGTAACTTAAGCCGTACACGCTCGCTCATGCTCAT
GTGACTTCGAGAGGTTTTAATTATGATGTTGCCTCTGATTTCCGTGAGGG
GGCGGGTGTCAGGTTTGCTGGATTAACCGTAGCAATCCAGTGTCGGCCGA
TCGTGTCGCGGAAACGAGTCTTACAGCTATTGATTTTTTCGTTGCATGGT
CAAGCTCGATTACCTAAAACCCGTCTGTTTTCCCCCCGGCGGGGGATTTT
TTTTTTTCCTGAATGCACACCACCCCGGGGGTAAATTAGGTTTTGGGGGG
GCATCTTTCTTTTTCTGCAACATTAACCCAAGGGGGAAAATCTCCCCGGG
AGAGAGTCTGGCTCTACATTCGGTAGGCAACACAGAACGAAAAAGTGCGA
CCAAACGATCCCAACATATCAGCGGCTGGTCAACAAATGCACGCAACCTC
TCATCTTCGTACAAGTGTTGAATGAAAACAGCTTGTTGGCCACAAGAGCC
GGCGCTTTTCATTCGCAGTGATGCCAAAATTGCAAGAACCCCGGGGGAAA
CGCATGGGAAAAAGTTGCCCTGGGGGAAAATCGTATCTTGGGGGGTAAGT
TTTTTTTTTAGTAAAAACGTTTCCTCCGAAGGCAAATCCCCGGTTGCACG
CTTTTCGGCCGAAAGGGGGATGGGGGCGTATTGGAGGGGGGAATCAGAGG
GGTTTACGGTCGTACTATACGATCATCATGCTTCGTCGGTGGCAGGATAA
AATCCCGCGTCGTTTTTAAGAGGTACACTTACAGTGCTCAGCTCAGAAGT
AGACCACGCATTCTACAGAGTACCGCTTGTGGGTTATTTGACTTCACAGT
TCATCAGGTTGACTGCCACTTGAACTCATGCGGACTGTCGCCCCCCCCCC
CCCCCGCCTTTCACGGCGCCCCCACATTGCGGGGGATCTGGTGTGACCTT
ACGTACGTTCCATACATCCAGGCTAGTACGGTATTACCGAATAGCTGGCT
TCCAAGCCGAGCGCGAAGTCGGCGAGGACTTGGGCAGCTTGAGAGACAGG
TTAACCTGGGGCGCTGAGGGCACGCTCATGACTGCATCGGCAGAGGACTT
CATGCGGCGATGGACAACGCTCATGTTGAACACTAATAACGGCGGCGAGG
GGTCTGCTTCGGACGCAGCGGCAGTACAAAAACAAGAGGCGTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:607536..611429+

>mRNA_P-littoralis_Contig81.172.1 ID=mRNA_P-littoralis_Contig81.172.1|Name=mRNA_P-littoralis_Contig81.172.1|organism=Pylaiella littoralis U1_48|type=CDS|length=894bp|location=Sequence derived from alignment at P-littoralis_Contig81:607536..611429+ (Pylaiella littoralis U1_48)
ATGCTGTACCTGACGGTGGCCACCTTGTTGGCTACCGTCGTGTCTTTCAA
TGCGCCAACGATCAGCTTCAAACCCAACAATGTTCGCAGGACTTGTTCTT
CCTTCGCTAATCCTGCGTCAAGCATGAACAGCAACAACAGCGGCAACTCT
GGCTCGCATCAGCGAAGAACAGCCGCAGCGGCGACAACACCAACTCTCCG
AGATTGTTCTGCTGCTACGTTGCCGCAACGCCGTGGTGGTGGTGGTAGTT
CGTTCGAATTAAACGTTGGGGGTGGAGATGGCGGCGAGGGAGAGTTCTAT
ACCCCGGCAGATTTGAAGGCGTACAGCAAGCCCTGGGGCATCACGCTGCA
CTACCGTGGCACCCTCAACACGTACCGTATCGAGGCGCACCGGGCGAACG
GCGAGGTCGCCGGGTATACCACGGGCTTTTACCTTGGAGATCTCCTGCAT
CTGGACAAAGTGCAGATTCAGCGAAAGGAATCTGCGTACGAACCCGGGGC
ACCGAACGCCCCAGCCCCCGGCACCCGCGACCTTCCGTGGGCGGCCAAAA
CGGGCAACCTGTTTCAGCTCGGCGCGGTTCTGGGGTGCGCGGCAGTGCGG
TATGGCTATGATAGGGGCGCGAGGAAAGTCGAGCTTCTGGCCATTCGCGA
GAACGAAAGGCAACATAGCAGGCTAGTACGGTATTACCGAATAGCTGGCT
TCCAAGCCGAGCGCGAAGTCGGCGAGGACTTGGGCAGCTTGAGAGACAGG
TTAACCTGGGGCGCTGAGGGCACGCTCATGACTGCATCGGCAGAGGACTT
CATGCGGCGATGGACAACGCTCATGTTGAACACTAATAACGGCGGCGAGG
GGTCTGCTTCGGACGCAGCGGCAGTACAAAAACAAGAGGCGTAG
back to top