mRNA_P-littoralis_Contig81.158.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.158.1
Unique NamemRNA_P-littoralis_Contig81.158.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Match: A0A836CEG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.830e-30
Identity = 148/509 (29.08%), Postives = 221/509 (43.42%), Query Frame = 1
Query:   31 APMLNASFRAVLNEASKRGVLDPPHGRTPMPDPQKITEGDLFASDGGSDIGGDDXXREETDTEPDEPALEAMDTEXXXXXXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGEYLRKNNPAAVLARKDKRNADREYLRNRVAKCLG--REAASIELRELVVHRQSGITNGPIVGELSDCGGLVWARTFRPGQFTIELSRYEDF--HTISRQGVIKVEQSTECSAIVEFDDLDSSTTWFYRAYLHNPRRGFDGPVAGFCVKGQFLTLPERDEDTGSTFRLAAFSLHGLGIQS-AAAEHGPAIEAACCAVSAAKPACCLVLGE----------PSSAQGVCACVSVSHFSRESFSDLQDTAGRIPALSRLLQGNGFLTASGLISKTARKRRKGKHHQRHAKTNKSGTSAPAEVARKAAKSERSNTKPSGEFPTGEGEHANSLPVPDWPVRCPESWGSR-HLGPTAEIFLMDARAGLVGEDQLAWISEAVEESSRTWKVIACGVPVGFPVAP 1509
            A +L+   RA+L EA +  V+ PP+GR+ +PDP+K+                                LE     XXXX X    XXXXXXXX  L+ YK++YGFNPLV+LGE+L + +P  + A K+ +  +RE  +  +AK     R+ A  +LR+L   R+SG+  GP+VG +   GG++WA+T R G   ++L   + F    I     + V+  +ECSA +    L   T + YR  +  P  GF G   G   +G F TLP          R A   L  +G  S A  +H  A+      + A++P  CL LG+          P   +G             S+        + P L +L++  GFLTA                   HA T  +  S+ A  A          T    +  T +   A  L    WPV    S  S   L P  E+++++ RAG +       + +A+  S+ TWK++A G  +  P  P
Sbjct:  694 ATLLDEGIRALLAEAQRLDVVQPPYGRSVIPDPRKV--------------------------------LEPTPEXXXXXVXLQVTXXXXXXXXNALMAYKYEYGFNPLVYLGEWLLQRDPVRLQAEKEAQ--EREQQKEELAKAQSAVRKEAFAQLRDLTARRRSGVVAGPVVGAIDAQGGVLWAKTLRTGTLQLQLCADDGFAPEHILLTDTVDVDIMSECSARIPLGGLAPETPYHYRVCVDKPSHGFYGIDGGCFTQGTFRTLPAPSN------RAARSELTFMGFSSDALVDH--AMSGVFAGMLASEPNFCLFLGDMTAGTALSSRPGGFRGKLPPTEGREDRVRSYRAFHAMIEQCPPLRQLVRSVGFLTAWD------------DSRALHAHTGSNDGSSKAGAAGSCG------TGGVSQDATVDTMAALQLVADYWPVHGKGSGFSMVTLSPGVELYVLETRAGTLPNASAQQLKKAILASTATWKLVAVGTSLSAPPGP 1142          
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Match: A0A7S3XL53_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL53_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 4.650e-19
Identity = 42/115 (36.52%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  322 EYKFDYGFNPLVFLGEYLRKNNPAAVLARKDKRNADREYLRNRVAKCLGREAASIELRELVVHRQSGITNGPIVGELSDCGGLVWARTFRPGQFTIELSRYEDFHTISRQGVIKV 666
            ++K+DYGFNPLV+LG YL+KNNP  +  ++ ++     YL+ R    L ++  +++L+E +V  +SGI  GP+ G  +    + WA+T +PG   +++S YEDF  ++   V++V
Sbjct:   55 KFKYDYGFNPLVYLGTYLKKNNPIFISQKQKEKENSLAYLQKRADHALRQQEIALQLQEQMVRLRSGIQQGPVCGGATADSIVFWAKTTKPGNLVVQVSDYEDFRYVTETAVVEV 169          
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Match: A0A7S2MF24_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF24_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.950e-17
Identity = 57/190 (30.00%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  322 EYKFDYGFNPLVFLGEYLRKNNPAAVLARKDKRNADREYLRNRVAKCLGREAASIELRELVVHRQSGITNGPIVGELSDCGGLVWARTFRPGQFTIELSRYEDFHTISRQGVIKVEQSTECSAIVEFDDLDSSTTWFYRAYLHNPRRGFDGPVA---GFCVKGQFLTLPERDEDTGSTFRLAAFSLHGLG 882
            ++ +++GFNP+V LG YLR NNP  +  R++++     YL+ R    L  E     +   V    SGIT GP+ G +S     +WA +  PGQ   E+S  EDF  +S +  ++V+     +  V+   L  ++  +YRAYL N +     P+    G  ++G+  TLP+ +++    F +    L   G
Sbjct:    8 KFIYEFGFNPVVQLGNYLRINNPVFIEKRRNQKAEAVAYLQKRGQAALKIETTFQSILARVKTMCSGITLGPVCGSVSYDSVKLWAASKSPGQIIFEISYQEDFAALSDRVGVEVDDEIGLTGCVQIGHLHPASVVYYRAYLENDKGST--PIRLDRGEFIRGKVTTLPDPEDEVNLEFTVVGSPLFTKG 195          
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Match: A0A7S3GMX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMX5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.320e-11
Identity = 75/293 (25.60%), Postives = 119/293 (40.61%), Query Frame = 1
Query:   61 VLNEASKRGVLDPPHGRTPMPDPQKITEGDLFASDGGSDIGGDDXXREETDTEPDEPALEAMDTEXXXXXXXXXXXXXXXXXXXKLLEYKFDYGFNPLVFLGEYLRKNNPAAVLARKDKRNADREYLRNRVAKCLGREAASIELRELVVHRQSGITNGPIVGELSDCGGLVWARTFRPGQFTIELSRYEDFHTISRQGVIKVEQSTECSAIVEFDD----------LDSSTTWFYRAYLH-NPRR--------------------------GFDGPVAGFCVKGQFLTLPERD 828
            +L EA K+  LDPP+GR   P P  ITE D F  DG                     AL++ D E                      E+KF+YGF+PL FL +++  ++P +V  R+ K+ A  ++L+ R      + + S +L +L   + SGI  GPI+   S    +V  +  + G+   ++S++ DF  + ++  + V+   + S +   +D          L  +   F R  L  NP                             F G V GF +K +F TLP  D
Sbjct:   22 LLAEAKKKDCLDPPYGREAFPTPL-ITE-DQFIQDG---------------------ALQSDDVEP---------------------EFKFEYGFDPLKFLSDFIVWSHPNSVEDRRQKKIAAAKFLQLRADHARLQLSISRDLSQLANDQSSGILWGPIITPTSSTSVMVSCKPIKLGKVIFQISKFRDFKEVLQREEVFVDSLNDESEVATLEDILPVKVTFKGLKPANKHFVRCCLSSNPEMRVVPVKKPGDMPIEAEEIVEEDGEGLDFKGVVGGFFMKTEFWTLPSED 270          
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Match: A0A2H5W0N3_9BACT (Alkaline phosphatase D n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5W0N3_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 5.150e-5
Identity = 36/109 (33.03%), Postives = 52/109 (47.71%), Query Frame = 1
Query:  532 GPIVGELSDCGGLVWARTFRPGQFTIELSRYEDFHTISRQGVIKVEQSTECSAIVEFDDLDSSTTWFYRAYLHN---PRRGFDGPVAGFCVKGQFLTLPERDEDTGSTF 849
            GPIVGE+++ G L+W R  +     IE     +  T      + +    + +A V+ D L   T +FYR ++ +   P R F GPV      GQF+T P  DE    TF
Sbjct:   40 GPIVGEVTEDGALLWVRANQEAIAHIEYGTDAELTTARFTDQVPLTSERDFTATVQLDGLMPRTRYFYRLHVRDAQDPSRAFIGPV------GQFVTAPGEDEWVPVTF 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CEG6_9STRA3.830e-3029.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XL53_HETAK4.650e-1936.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2MF24_9STRA1.950e-1730.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3GMX5_9STRA2.320e-1125.60Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A2H5W0N3_9BACT5.150e-533.03Alkaline phosphatase D n=2 Tax=Bacteria TaxID=2 Re... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:539823..549883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog222534.KB893718_gene2286
Preferred namephoD
PFAMsPhoD,PhoD_N
Model size2238
Max annot lvl201174|Actinobacteria
KEGG rclassRC00017
KEGG koko:K01113
KEGG ReactionR04620
KEGG Pathwayko00790,ko01100,ko02020,map00790,map01100,map02020
KEGG ModuleM00126
Hectar predicted targeting categoryother localisation
Exons10
Evalue6.5e-07
EggNOG OGsCOG3540@1|root,COG3540@2|Bacteria,2GJCI@201174|Actinobacteria
Ec32 ortholog descriptionMetallo-dependent phosphatase-like
Ec32 orthologEc-14_005730.1
EC3.1.3.1
Descriptionalkaline phosphatase
Cds size2238
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.158.1prot_P-littoralis_Contig81.158.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 539823..549883 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791663.4711015-CDS-P-littoralis_Contig81:539822..5402071680791663.4711015-CDS-P-littoralis_Contig81:539822..540207Pylaiella littoralis U1_48CDSP-littoralis_Contig81 539823..540207 -
1680791663.487293-CDS-P-littoralis_Contig81:540706..5407681680791663.487293-CDS-P-littoralis_Contig81:540706..540768Pylaiella littoralis U1_48CDSP-littoralis_Contig81 540707..540768 -
1680791663.505211-CDS-P-littoralis_Contig81:541347..5416171680791663.505211-CDS-P-littoralis_Contig81:541347..541617Pylaiella littoralis U1_48CDSP-littoralis_Contig81 541348..541617 -
1680791663.52356-CDS-P-littoralis_Contig81:542154..5422081680791663.52356-CDS-P-littoralis_Contig81:542154..542208Pylaiella littoralis U1_48CDSP-littoralis_Contig81 542155..542208 -
1680791663.5374722-CDS-P-littoralis_Contig81:543370..5435091680791663.5374722-CDS-P-littoralis_Contig81:543370..543509Pylaiella littoralis U1_48CDSP-littoralis_Contig81 543371..543509 -
1680791663.5531602-CDS-P-littoralis_Contig81:543830..5440031680791663.5531602-CDS-P-littoralis_Contig81:543830..544003Pylaiella littoralis U1_48CDSP-littoralis_Contig81 543831..544003 -
1680791663.5661395-CDS-P-littoralis_Contig81:544333..5444781680791663.5661395-CDS-P-littoralis_Contig81:544333..544478Pylaiella littoralis U1_48CDSP-littoralis_Contig81 544334..544478 -
1680791663.5799081-CDS-P-littoralis_Contig81:544947..5451581680791663.5799081-CDS-P-littoralis_Contig81:544947..545158Pylaiella littoralis U1_48CDSP-littoralis_Contig81 544948..545158 -
1680791663.593984-CDS-P-littoralis_Contig81:545615..5458191680791663.593984-CDS-P-littoralis_Contig81:545615..545819Pylaiella littoralis U1_48CDSP-littoralis_Contig81 545616..545819 -
1680791663.6101606-CDS-P-littoralis_Contig81:549288..5498831680791663.6101606-CDS-P-littoralis_Contig81:549288..549883Pylaiella littoralis U1_48CDSP-littoralis_Contig81 549289..549883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.158.1

>prot_P-littoralis_Contig81.158.1 ID=prot_P-littoralis_Contig81.158.1|Name=mRNA_P-littoralis_Contig81.158.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=746bp
SNTVLDLASIAPMLNASFRAVLNEASKRGVLDPPHGRTPMPDPQKITEGD
LFASDGGSDIGGDDDDREETDTEPDEPALEAMDTEEEPPPPEEDGDDQDD
DDDDKLLEYKFDYGFNPLVFLGEYLRKNNPAAVLARKDKRNADREYLRNR
VAKCLGREAASIELRELVVHRQSGITNGPIVGELSDCGGLVWARTFRPGQ
FTIELSRYEDFHTISRQGVIKVEQSTECSAIVEFDDLDSSTTWFYRAYLH
NPRRGFDGPVAGFCVKGQFLTLPERDEDTGSTFRLAAFSLHGLGIQSAAA
EHGPAIEAACCAVSAAKPACCLVLGEPSSAQGVCACVSVSHFSRESFSDL
QDTAGRIPALSRLLQGNGFLTASGLISKTARKRRKGKHHQRHAKTNKSGT
SAPAEVARKAAKSERSNTKPSGEFPTGEGEHANSLPVPDWPVRCPESWGS
RHLGPTAEIFLMDARAGLVGEDQLAWISEAVEESSRTWKVIACGVPVGFP
VAPMVEPMHYEEERARQHAAAATIQTRLRSHLSWKASADGSGGDGSAQHG
GSSPPSSQIRASAGGSGAADDDEAAREAGGSGLREKAGISKATVQMQNLV
SRLHASGCSNVVLITPARSRPHALSFLSGQEAEGRFPVYELGCSALVPLL
LNSSSSSSSRDGNVDNTKTTTEGPEPCPDLAPNVLMPELAASLSACTGGD
DRGVRGVACTLSFGRGAGTNDWLSFVVSGAGGVEISSLTLRAAVN*
back to top

mRNA from alignment at P-littoralis_Contig81:539823..549883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.158.1 ID=mRNA_P-littoralis_Contig81.158.1|Name=mRNA_P-littoralis_Contig81.158.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10061bp|location=Sequence derived from alignment at P-littoralis_Contig81:539823..549883- (Pylaiella littoralis U1_48)
AGCAACACTGTCCTCGATCTTGCTTCCATCGCGCCAATGCTCAACGCCAG CTTCCGTGCGGTGTTGAACGAGGCGAGCAAGCGTGGGGTGCTAGATCCCC CGCACGGCCGGACACCGATGCCCGACCCGCAAAAGATAACCGAGGGAGAC TTATTTGCGTCGGACGGTGGTAGCGATATCGGTGGCGACGACGATGATCG AGAGGAGACTGACACAGAACCAGACGAGCCAGCACTGGAAGCAATGGACA CGGAGGAGGAGCCGCCACCGCCCGAGGAAGATGGCGATGATCAAGATGAC GACGACGACGACAAGCTCCTAGAGTACAAGTTCGACTACGGATTTAACCC TCTGGTCTTCCTTGGAGAGTACTTGCGAAAGAACAACCCAGCGGCTGTCC TCGCTCGTAAAGACAAGCGCAACGCCGACCGCGAGTATCTTCGAAACCGT GTGGCCAAGTGCCTCGGGAGAGAGGCGGCGTCGATCGAGCTCCGCGAGCT TGTTGTCCATCGACAGTCTGGAATCACCAACGGCCCGATAGTCGGAGAGT TGTCTGACTGCGGGGGGCTTGTTTGGGCGAGGACGTTTCGACCAGGTGAG CTGCTGCTGCTAGATCCGGTTTGGTCATGTAGAAAACTTTCGACGTGGCC TCCCGACGTCGTGCAGTGTACCTACTTTTCTTAAGCATGACCTGCTGCTT GCTTTCCTTGCCTCTGTTTGAACGTATCAGCAGCGAACACAACGCGTAAC AGCAGTCAAATGCTATGTAAAACGCATTCAACGAGGTAACTGGCGTCCAG AATAGATGGGGCAAGAATAAACACACGCACAAACTGTTTGTGGCACCTGC CCCGCAAGTGAATACACAGTTCCCGCATGCTGGAATAAGGCAGGACAAAA ATATTTCGTAGGACACGAAGACAACAAACAACAGTGGTGCAGTGGCAGTG ACGGTACTGCTGTACACAGCGAGACCGCCCAAATGTTTTTCTTGTGCAAA ATTGTTTGTTGAGTCTGGTACTTCAGGGAAGCTGCAACTCTGTGTCACAT GACGACTTGTGGAGGTATGTATCATACCACTATACAGCAGTAACACCATG TGTTCGTTGTTGATCTGTTCCAAACCCTCTCGTCTCCGAGACAAATATTT CGAAAAATAAAAAAATAAAAAATGATAGTTTTTTCTGTAGTTATCGAAAA TACGAAACCGTTACTCAACCGGAACGTATTGCAGCGCATGTCACCACGCG TAAGCGAGAGCATCGCACGCCAGTGCAGCAACCTGCCCTGCATCATTAGT CCACCATGAGCACCGAGCTAATTTTTCTAGGTCTGAGTACAGCATGAACG TGTTGAAGCTCTACTGTAGTGCTTACGACGTGCAAGTTGTCCCAAGAAGA GATGTTGAATACTGTCCTTCGTTTGAATACTTCGAAGGATTACTGTAGAG TGCTGACGCGTGGACTCGAGTCGAAAGAGCCAGTTTTCGTCCGGTTTTGT CGGTTTTGAAGACTCATGCTGTGACCTTGAAAGACGCCCCGGACGATGCT GATAGCGCAAATATAGGCCGTACATACTCAACGTGTGTCACACAAGGTGG TCGTCAAATTGTCTCGTTGAGCCTGATAACCTCATGGGGGACAGCTGGAA CGGTGTAATATCTGATGAGTCCCCGATGCGTCATAAAAACAGAATAGGTC TACCAGATGTATTTTCATTTGTGTACGTTGCTAATAATCTACTCCAAGAT TCTCGTCTGGATAGCGGCGACACATTGATGTGTTTACAAGGGAAAAAAAC AACATTTTTTCGTATAACGCATCGCTACTGGTTAGTTTATGAAGGGTATC CGAGGGTATAACTTATGGCACATACCCTCACTGCTGCGGGCACATAATGG TCTGGTGTGATGACCGCAGCGGCTCTGAAAACCTGCTGTTGTTCTTCATA AAAGAAGAGGAGGTTTCGTCGTCGCAGACAAAACTAAAAAGTTGTTTATT TAGATACTTGGAGAATTGCTCGGGGATAGCCGGTCGCCCCGGTGGACTAG TGGTCCCTCGTTAACCACTAGATGCAGAGGAACGGGGGTTCGATTCCCGG TGAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGTCAGTAAAAGC AGATTCGGCTTCTTCGCCGACGAGGGTAGGGACCGCGGACCCCTGCTCGC GAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGTAACTCCT CCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCTAGCCTGTA GTTTGCAGACTAGTGTGCCAGAGAATATGGGATGACAACACACAGATGGA CATGAAGAGCCATAGACGCCCTCTCTGTCACTTTGTCGGAAAGAGGCTGA CGGCATAGGTCTTCCCCGCTAGAGATACAACAAGAAATACATCGAAGTAT TTATGTAGAAGTATGATACAACATCGGACATCGGATCACAATCTATACTA TCATACGTACGCTTTGTTGAGATAGATAGCACCTAAGGTGGACACAGAGA AAATGTATTGGAGCCAGCATAGATAGGAGCCAAGACTGCTAACCTGTAAA ATAGGTCCAAAGAGTGGCGGACGCTAGTGCATCTCTGCCAAGGTGATTTC TTTCTCTCTCTTGTCCTCGGGCAGGAGAAAATAATACTAAAGGCAATTCG AAAAAAAAAAAAAATAAACACTGACAAAATCCTATGTGGAGCAGCGTAGA ATATGATCCTCAAGCAAGACAGACAGCAGCAGTAGAAGTTTCACTTCAGA ACCTATCGCGAAGCGCGATACGACGTTCTTCGAAGTTTATCTGAAGCCCC CAGATTGAAGCATACCACCGATGCACATGTCCGACGGGAAAATGCGCTCC CTACGAAGGAGGAGACTGCAAAGGCGTCCACAAGGCATGAGCACAAGGTT GAAATTGTGATGGAGGGGTTTTAAAAACAAAGTCTTAACGACTTGTATAC TGGAAGTGCGACTGACGGTATTCAATCGTCGTGGCAAAGCCTCCAGCCTA TTCTTTACGTCGCCATATATAAGTCATTCTACAACATTGGAGACTACTAC GTAACAAATGTGTGTTGTTGTATGTGCGTGTTGTCATCCCATTTAATCTG GACACCAGTTTCACCTTCCGGTATGAGCTAGGCGCACCCACCGGGGTCAC ACAGAAGGAAGATCAACATGGACGTTATTGTTTTTTTCTCCACCGACCGC CCTTTTGTAGTGACTACCTTTATGTCAATCGCGATGAGGCTTTGGCCATC CCTTTCACTCGTCGACGTTCTTCAGTCAAATTTTGTATGTACTCACGAAG TATTCCCTTTCCACTCCTAGAATTCGGGTGAGAAAATCCCGAGACCTGGA TTCGAACACACTACCTAGGTGTCGAGGTTTCCGAGGGTACCCTGTGAATC ACCGGGGCGTACATGGCGTGCATGCTTCGAGCATTTTTGGATGCCGTTGT GTTTGTGTGCATTACATGGCAGCCCACAACGACGGACGGGAAAGTTTGCG GGTCGACCGGTACGAAGAGGGAGGAGCTGGGCTGTTTCGTTTTCACAACG GAAAATGCGAAAAAAAACACAACATAAGGGGACGATAAAGTCCATGGCTT ATCTTGATCAGTTTCCAGCTTCAGGCGAACATACGCGAGTACTCTGTGTA TATATGCAGACGAGGAGAACCTCAATGTAGATTGTATCGTACAGCACCAG TCAGTACGACCATGTGGGGGGGGGAGTGTTTATCACAGGTGTGCATGCCG TACACGTCTAGGCTATTATGTACGTTTGCACGAGCTATCTATCTGTATTT GACCAGCAGTGTCCTTCTCTTTCCGGAACATATCGTGCTCGTTCATGTTT CTTCTCCCTCTCGTCTTTTTTCTCTCTTCTTCTCCACCACCCCCCGTTCT CCTTCTTATTTCTTCTCGTGCATCGCCGTGGCTGTATTGCCCCCATGCTG TCCAACCCTTCGAAGAATACCTGTATGTGTGTATTCACACAACACTTCTA CAACACTATCACAGGTCAATTTACGATTGAACTCAGCCGATACGAGGACT TCCACACCATCAGCCGACAGGGGGTGATAAAGGTGGAGCAGAGCACAGAG TGCTCTGCCATCGTGGAGTTCGACGATCTCGATTCCAGCACCACCTGGTT CTACCGCGCTTACCTGCACAACCCTCGTAGGGGTTTCGATGGACCTGTGG CGGGCTTCTGTGTCAAAGGTGATTACAAATGAGCGCCGTGTATTGAAAAA CATGACGCATCATACAGGGTCCGGTCTCATGTCGTGAAGCACACAGCAGT ATTCGACATCGAAACAACTAATATTATCATCCTGGTGAATCAGTAATAAT AAATATATACGTGACTTCACGTGGATCAAGTTGCCACACAAAAGCAAAGC GCGCGAGTCTCTCCCGAACAAATCGGGAAGAGGCATACCATGTACAGACC CCCGTTTATTTCATCCCCCAGGCCGGTCACACATCATACCATACACCGCC CTGCTTAAAATCGTAGCTTTCGCCTACGTGTGGGCACACACAAGGTCAGC GTGGGTCGATGTGAACACCAAGCACGCATTCGTAAGTCGAATGCCGCCTG GCGTCGCATCGTTGGTGATCCATTCGGCGCGGTCGGTGCCAACAAGAAAC CACACGCCACACGAACCACACACAGGCCAGTTTTTGACGCTGCCGGAAAG GGACGAAGACACCGGCAGCACCTTTCGGCTGGCCGCCTTCTCGTTGCACG GCCTGGGGATCCAAAGCGCCGCCGCCGAGCACGGTCCTGCAATCGAGGCC GCGTGCTGCGCGGTCTCTGCCGCCAAGCCCGCGTGCTGCCTTGTTCTCGG AGAACCTTCTAGTGCACAAGGTGTGTGTGCATGCGTGTTTCCCCTTCGTT GAATGGCCAAAGTTTCTCCGACCAACTAATGGAAGACCATCACTTTTGGC GGGACGAAAACAAACACACTACCGCGAACCGGGGTATCCCACTGGGGGAG TTACGACGGAGGTGGAACTCAATCTATTTGTGTCTGTGTGAGTGCGTATA CACATGCGCCGGCTGAAGAAACTGTATGATGAGTACCTCGCATTTATTCT CCATGTAGGTCGCAGCGGGCGATAATATTGATAAGCTGTAGAGGAGCTGT CCTTCTGCCGCGACTGCACATTGAAGAAGATCAACAGATTGGCCGTCAAT CCCGTGATCCCCCCCCCCTGTCGCATGCGGGGCCCCTCAGCATACTGCGG TACCAACCGACATTAACTTATCTTTCTCCATCTGTCTCTCTGATTCTAGC GTGCACACCTCCTCTCTTTTTTCTTCGTTTCGATCCGTCAAGGCCTGCCC GCAAGTAGCGTGAGTCACTTCTCCCGAGAAAGTTTCAGCGACCTCCAAGA TACTGCCGGGAGAATACCGGCGCTGTCGCGGCTGTTGCAGGGGAACGGCT TCCTCACCGCCAGTGGCCTGATCTCGAAGACCGCCCGTAAGCGCAGAAAG GTGAGCAAGGGGAAGTGATCGGCGCGGGGAGATATGGAGAATGACAACGA AGACGACGACGCCGGCGAAAAAATAACGTCTGCAATGGTGTCGTTGGTGT ATGGAGACCTATTACAGGGGACGACGCGGAATTTTTCACGGTGGTGTGAT GGAATGGAATACTTCCTAAGTGAAAATTCGTGTTCGTTGTGGGACGGTTA AACTCGTGGACGTTGTTTTTACCGGTTGATTTTTTCTCACGTGAAAATGC GTGTGCATAAATAAATATCAGTTGCAAGAAGAGTAAGTCGCACAGACGAT CTTTTTCCCGGTGTCGACCCAACACTGCAGGGAAAGCATCACCAAAGGCA CGCCAAAACAAACAAGTCAGGCACCAGCGCCCCGGCCGAGGTTGCGAGGA AGGCCGCCAAGTCGGAGAGAAGCAACACAAAGCCGTCGGGCGAGTTCCCC ACCGGCGAAGGAGAGCACGCCAACTCGCTGCCGGTACCGGATTGGCCGGT TCGGTGAGCCAGCTTCCCGTCAATGACTCTCCCGGCCGTGTTCATCATCT AGGTCGTGCGTATCACATGTTGCGGCAATCGTGCCGATAAAAACCCTTTC CGCCTTCCCGCGTGCAGCCGGAGAGCTCTAGCTGGACTGATGAATGGGCT CTCGCGTTGTGCTTCGTACGTGTTTCCCAAAAACAAATACATAGGCGCTT ATCGTTCAGTATGAAGTGTGCCCGGTTCTGTACCCGGACAACCCCCCCCG CCGAACAATGAAACCGCGGCGTCGAACCAACCCGCCAACTCCACCCACCG GTACCCGTGCGCCGGCTACGACAGGTGTCCCGAGTCGTGGGGAAGCCGTC ACCTTGGTCCGACCGCCGAGATATTTCTCATGGACGCGCGGGCTGGGTTG GTGGGGGAAGACCAACTTGCATGGATATCGGAAGCAGTCGAAGAGAGCAG TCGCACATGGAAGGTGAGCTGGGTGGGCCAGTGGGCCAATGGGCGGGTTT CAGCATTCCCAACGGCGCTTGCCGTTGTTGGTGTCGTGTTCTGTGCGTGG AAGTGGGGCAGGGAGTTATAAGTCCGTGAACACGTACCCCGGTCGCCCCG GTGGACTAGTGGTCCCCTCGTTAACCACTAGATGCAGAGGAATGGGGGTT CGATTCCCGGTCAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTGT TAGTACAAGCAGATTCGGCTTCGCCGACGAGGGTAGGGACCGCGGATCCC TGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGTGGGGGT AACTCCTCCTGTGTTGACCTTCCCCCTGTGTGACCCCGTCGATGGGCCTA GCCTGTAGTTTGAACCGCAGGGTACAGACAAGTGTGCCAGAGAATATGGG ATGACAACACAACACAACACACCCCTCAGAGAGAGCGTGCATGACCTTCA ATAGGGACGAAATGTGTCAAGGGCTTGGGTGACGTGCGCCCTGTGGTGAA CGACAGTGATAGCATCGAGCTTCCTTTCAAGCTCGTGGTGGCGTGTGGCT GTAGGCGGGGGTTCTCTTGTCGCTGTTTTGCTCTGCGTCGGTTGCACGAG GATTTGGGAGGCGCTGAGCAACCGGCCATAATCAGCGCTTAGGGCAGTGG ATTCTACCGTACTCAATAAGACTGGGCCTGGCGATGCTTCCACAAAACAC CGTCGCAGCTTGATGGTGTTTAGCACTATTGGTGAGTAAGGATTTCGCTA GCTCTGCCTACGGCACCCACGGCGAACAACAAACTACCTATGGCTACCCA GGGCAAGCAACAAACTCACGAGCAAACGCCGCGTCGCGTCGGACTGCTGG CTTCTAATTTGAATAAATGAGACAATGTCACGGCCCCCCGCCGCCACATT TGGCGCGTGCAAACGCTAAGGCAATTCACACCGAACGAGGGGGCCGTCGG TGCAACTATGTAAACTATCCCGAGAGCCATCGTACTGAAATCACTCACAA ACATGCAGGGAAGGTGCACATGTTTGCACACCTCTCTCCTCCTCCCTCAT GTGTGTCAAGGATTTTTTTTCGTAGTCTATTATTTTCTGCCCCGCCCACG ACCGAGCCCCACTTGTTTCCCGCAGGTGATCGCGTGCGGGGTGCCGGTGG GATTCCCGGTTGCGCCGATGGTTGAACCGGTGAGGCCAACACGTCAAGGT TTTGTTAGGGGACTTGATGTTGCGCGGGCGACTACTTCTCATGCCATGTG TGAGATGGAAAACGTAACAATAAATAGATCTGTGACCTTTCTGAACATAT GTGCACCCCGCAAAGCTCATGCGATTGTTAGCGCGAATAAGCTCCCCCCC ACCGGCGATAATTATTTGAGTGTATCTAAACAAATCTTGTGGAAGTGGTC TATCGTTCCGGGGTAGCATCTTGAGAGGTGTAGTGTTGATGTTTGACGCA ATACGCTCTTTTCGACGAAGGCGACCACGGATAGCGAGCTGGTAAAATCG GCCGCGGCCTCTTTCACCATGCAGGGAAAGCCGGCAATCTCCCCACTTCA GTACAGATGAGGTTGTGCTTCAGCCTCTTCTCTTTTGGTACAGGCAGAGA GATAGCTTCCAGCCTCCCACCGGAGTGCGCCCAGCCATCCTGTTTGTCGG GTGCCAACGCTTCACAATATCTCCCATACCCAGACCTTGGCAATTTTCTT GTTTCGCCCATCTCAGATGCATTACGAGGAGGAGAGAGCCCGACAACACG CCGCGGCGGCCACGATCCAGACCCGTCTGCGCTCCCACCTCTCGTGGAAA GCATCTGCTGACGGTAGCGGCGGCGACGGTAGTGCTCAGCACGGAGGATC GTCCCCACCTTCCTCTCAGATACGGGCGAGTGCTGGTGGTAGTGGGGCTG CCGACGACGATGAAGCAGCGAGAGAGGCAGGAGGGAGCGGGCTGAGGGAG AAAGCCGGCATCTCGAAGGCAACCGTTCAGATGCAGGTACTGTAGGTGCC GTACAACGTATATTTGGTGCTTGGGCCGCGATGCGTCCGCCATTCTCCGG TATCGGTATCGGCACCGCCCCAACAGAAGAGATGGATGGGATTGTTTGCC TTCGCACTGTTGTTTCCCATGGTTCGGCCGGGCAGTAGTCCCTCAGTTCG GCTACCCAGTTTCGCATAGCTGTAAGGCACAAGGGTACACCAGGGAAAAG GGGGTATCTGAAGTGTTGCCTGTTTCGAAAATAAGCTTCGAGCCGAAAAC GCGCCTCAAAAGAAGCCTTCAGACTACTGGAACGTGTGGGGAGAATGGAA CGGCCGACTGAGCAGACCCCCCTCCTCCCTCCCCCGCGTGGCCACCGCAA ACCCCGTTCCCCCGGTCTCTTGCTCTTGTATTGTGGTGTCGGTGGGTGAC TGCAGACCACGTTAAAAATGATTCCGTGCGCTTTTGTTTGATCCCGAAAG GCCGCTCCGTTCTGCGAAATTGTTTGCGATGTACACTGTTTGATTCGATT GTATCCTCCTGTCGTCGAAACGCCTCCTGCTGGATTTGTTTCTCGATTAT TGATACGATGCGCAGAATTTGGTGTCCCGGCTCCACGCCAGCGGCTGCAG CAACGTCGTGCTCATCACGCCGGCTAGGTGAGGGTCAGCAGAGAGAGGGA GGGAGGGGGGGAGGGTGGGGGCAGGTGTCCAACCTTGAGTCCGCCAAGAT GGCTGGTCTACTGTTTTAGCAATGACCTACCTGAGATATTCTTCTACGAA TTGTAGGTGCTCGTGGCGAGTGGATACGTTACTGGGACAAGTGCGGGTTA AAGCAGCTCTGAAGCACCACTCGAGCAGAAAGCTAATCTGTGAATAGCAG AAGCTACTTCTTCGAAGCGTCAGGATGAGCAAATCGTCCCAAACTAGTTC GGCATGCAGTCATGCCCTGCATTCCCCGTACTATCCCGCTCCTCCGACAG CCACGTTTACCACATTTATTTTTCCATGGGTTCCACACCCGCTGACACGA GGACACATTCCAGGAGAACGCTCTCCTTTCGTCCCCCGCCCCCCTCCCGC TTCTGCGTCTTTTAACTCCGACTCGCGGGTACTCGGCAACCGCCCCTCTA CTCCCTTTACGCTAACAAAATTTAAGGTCGCGGCCGCACGCCCTTTCGTT CCTTTCCGGGCAAGAAGCCGAGGGACGTTTTCCCGTCTACGAGCTAGGTT GCAGCGCCCTGGTGCCCCTTCTCCTCAACAGCAGCAGCAGCAGCAGCAGC AGAGACGGAAACGTTGACAACACCAAAACGACCACCGAGGGGCCGGAGCC CTGTCCAGACCTGGCGCCGAACGTGCTGATGCCCGAGTTAGCAGCGTCGT TGTCGGCTTGCACCGGCGGCGATGATCGTGGTGTAAGGGGGGTGGCTTGC ACCCTGTCGTTTGGGCGTGGAGCAGGGACGAATGACTGGCTGTCTTTCGT GGTGAGCGGCGCCGGAGGGGTGGAAATCTCCTCGTTAACGCTTCGAGCCG CTGTTAACTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:539823..549883-

>mRNA_P-littoralis_Contig81.158.1 ID=mRNA_P-littoralis_Contig81.158.1|Name=mRNA_P-littoralis_Contig81.158.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2238bp|location=Sequence derived from alignment at P-littoralis_Contig81:539823..549883- (Pylaiella littoralis U1_48)
AGCAACACTGTCCTCGATCTTGCTTCCATCGCGCCAATGCTCAACGCCAG
CTTCCGTGCGGTGTTGAACGAGGCGAGCAAGCGTGGGGTGCTAGATCCCC
CGCACGGCCGGACACCGATGCCCGACCCGCAAAAGATAACCGAGGGAGAC
TTATTTGCGTCGGACGGTGGTAGCGATATCGGTGGCGACGACGATGATCG
AGAGGAGACTGACACAGAACCAGACGAGCCAGCACTGGAAGCAATGGACA
CGGAGGAGGAGCCGCCACCGCCCGAGGAAGATGGCGATGATCAAGATGAC
GACGACGACGACAAGCTCCTAGAGTACAAGTTCGACTACGGATTTAACCC
TCTGGTCTTCCTTGGAGAGTACTTGCGAAAGAACAACCCAGCGGCTGTCC
TCGCTCGTAAAGACAAGCGCAACGCCGACCGCGAGTATCTTCGAAACCGT
GTGGCCAAGTGCCTCGGGAGAGAGGCGGCGTCGATCGAGCTCCGCGAGCT
TGTTGTCCATCGACAGTCTGGAATCACCAACGGCCCGATAGTCGGAGAGT
TGTCTGACTGCGGGGGGCTTGTTTGGGCGAGGACGTTTCGACCAGGTCAA
TTTACGATTGAACTCAGCCGATACGAGGACTTCCACACCATCAGCCGACA
GGGGGTGATAAAGGTGGAGCAGAGCACAGAGTGCTCTGCCATCGTGGAGT
TCGACGATCTCGATTCCAGCACCACCTGGTTCTACCGCGCTTACCTGCAC
AACCCTCGTAGGGGTTTCGATGGACCTGTGGCGGGCTTCTGTGTCAAAGG
CCAGTTTTTGACGCTGCCGGAAAGGGACGAAGACACCGGCAGCACCTTTC
GGCTGGCCGCCTTCTCGTTGCACGGCCTGGGGATCCAAAGCGCCGCCGCC
GAGCACGGTCCTGCAATCGAGGCCGCGTGCTGCGCGGTCTCTGCCGCCAA
GCCCGCGTGCTGCCTTGTTCTCGGAGAACCTTCTAGTGCACAAGGTGTGT
GTGCATGCGTTAGCGTGAGTCACTTCTCCCGAGAAAGTTTCAGCGACCTC
CAAGATACTGCCGGGAGAATACCGGCGCTGTCGCGGCTGTTGCAGGGGAA
CGGCTTCCTCACCGCCAGTGGCCTGATCTCGAAGACCGCCCGTAAGCGCA
GAAAGGGAAAGCATCACCAAAGGCACGCCAAAACAAACAAGTCAGGCACC
AGCGCCCCGGCCGAGGTTGCGAGGAAGGCCGCCAAGTCGGAGAGAAGCAA
CACAAAGCCGTCGGGCGAGTTCCCCACCGGCGAAGGAGAGCACGCCAACT
CGCTGCCGGTACCGGATTGGCCGGTTCGGTGTCCCGAGTCGTGGGGAAGC
CGTCACCTTGGTCCGACCGCCGAGATATTTCTCATGGACGCGCGGGCTGG
GTTGGTGGGGGAAGACCAACTTGCATGGATATCGGAAGCAGTCGAAGAGA
GCAGTCGCACATGGAAGGTGATCGCGTGCGGGGTGCCGGTGGGATTCCCG
GTTGCGCCGATGGTTGAACCGATGCATTACGAGGAGGAGAGAGCCCGACA
ACACGCCGCGGCGGCCACGATCCAGACCCGTCTGCGCTCCCACCTCTCGT
GGAAAGCATCTGCTGACGGTAGCGGCGGCGACGGTAGTGCTCAGCACGGA
GGATCGTCCCCACCTTCCTCTCAGATACGGGCGAGTGCTGGTGGTAGTGG
GGCTGCCGACGACGATGAAGCAGCGAGAGAGGCAGGAGGGAGCGGGCTGA
GGGAGAAAGCCGGCATCTCGAAGGCAACCGTTCAGATGCAGAATTTGGTG
TCCCGGCTCCACGCCAGCGGCTGCAGCAACGTCGTGCTCATCACGCCGGC
TAGGTCGCGGCCGCACGCCCTTTCGTTCCTTTCCGGGCAAGAAGCCGAGG
GACGTTTTCCCGTCTACGAGCTAGGTTGCAGCGCCCTGGTGCCCCTTCTC
CTCAACAGCAGCAGCAGCAGCAGCAGCAGAGACGGAAACGTTGACAACAC
CAAAACGACCACCGAGGGGCCGGAGCCCTGTCCAGACCTGGCGCCGAACG
TGCTGATGCCCGAGTTAGCAGCGTCGTTGTCGGCTTGCACCGGCGGCGAT
GATCGTGGTGTAAGGGGGGTGGCTTGCACCCTGTCGTTTGGGCGTGGAGC
AGGGACGAATGACTGGCTGTCTTTCGTGGTGAGCGGCGCCGGAGGGGTGG
AAATCTCCTCGTTAACGCTTCGAGCCGCTGTTAACTGA
back to top