mRNA_P-littoralis_Contig81.122.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.122.2
Unique NamemRNA_P-littoralis_Contig81.122.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 1.090e-98
Identity = 176/417 (42.21%), Postives = 242/417 (58.03%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHG-IGLEPLQLPVIPTG 1080
            M KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  + NMDQTP+Q E+P +TT+EKTG K A I+TGG+  +    V    +   DG+KV PRII+KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++ +  T+++CF +CGLTL LDGSEDHAWC + FG++YR++L EQR  W   H  + L PL+LP +P G
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLV---LAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG 413          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.020e-91
Identity = 184/445 (41.35%), Postives = 241/445 (54.16%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALMY-------------------------------NMDQTPIQAEMPPDTTVEKTGTKSACITTGG-----ETVQGEAAVHRGASC-----PG--------------DGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI----RDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1077
            VM KLL   P   GG+ ++ +PE+   F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E I+A  Y                               NMDQTP+Q EMP +TT+EKTG K A I TG       T+  +   +   SC     PG              DG KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+      RD   ++G K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:   87 VMNKLLELKPDTLGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGE-IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTIL-KPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTG-KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 525          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 1.100e-86
Identity = 165/422 (39.10%), Postives = 227/422 (53.79%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRS-----------------------------CFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQ 1011
            M KLL   P   GGM +  +P +   F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  + NMDQTP+Q EMP +TT+EKTG K A I+TGG+  +    V    +   DG+KV PRII+KG PF+                               +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+ S                             CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLV---LAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSG-KLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQ 418          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.370e-85
Identity = 175/433 (40.42%), Postives = 235/433 (54.27%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGNPFV---------------------------------GGTNNFGYPA----GGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYT----SWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHGIG-LEPLQLPVIPTG 1080
            VM KLL   P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  + NMDQTP+Q EMP +TT+EKTG K A I+TGGE  +    V    +   DG+KV PRII+KG PF+                                 GG  N   P     G   +   + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT V+ + GGLT + QPLDR +NK+ KR +R +YT    S + D   RSG K+  P  G+V+TW KE W++I+ +T+ +CFK+CGLTL LDGSE HAWC + FG++Y ++L EQ   W   H    L PL+LP +P G
Sbjct:  182 VMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLV---LAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVAD--ARSG-KLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHHAWCEHNFGEDYGDLLEEQHAVWLAEHPDDTLPPLKLPKVPGG 607          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 1.640e-85
Identity = 175/424 (41.27%), Postives = 230/424 (54.25%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASC---PGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEW-EQAHGIGLEPLQLPVIPTGDG 1086
            VM KLL   P   GG+ +    E+   F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  + NMDQTP+Q EMP +TT+EK G K A I+TGG+  +      R   C     DG KV  RII+KG PF+                            NFGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V+++ GGLTP+ QPLDR ++KE KR +R RYT ++       ++G K+  P RGLV+TW KE W  I+  T++ CFKVCGLTL LDGSED AWC + FG+ YREVL +QR EW  Q  G+ L PLQLP + +  G
Sbjct:  173 VMNKLLELKPDALGGLTAAASAEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKE------RFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYMASAIADPKTG-KLQPPGRGLVSTWCKESWAAITAETVKMCFKVCGLTLALDGSEDDAWCTHNFGEGYREVLVQQRAEWGAQRPGVTLPPLQLPEVSSASG 574          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 4.190e-82
Identity = 170/422 (40.28%), Postives = 225/422 (53.32%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALMY-------------------------------NMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCP--------GDGQKVR-----PR-----------IIYKGNPFVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQ-----KVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1077
            VM KLL   P   GG+ ++ +PE+   F+ +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E I+A  Y                               NMDQTP+Q EMP +TT+EK G K A I TG    +  A+  R A  P            +VR     PR                  F     + G P      GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+    N  ++ +      +  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L  LQLP +P 
Sbjct:  149 VMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGE-IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNAS--RSAWLPRRMARSRLASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGSPWEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA----NTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVPA 562          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 4.130e-80
Identity = 158/380 (41.58%), Postives = 218/380 (57.37%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCI 969
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG   +    +    +   DG+KV PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W++I+  T+++C K+CGLTL LDGSEDHA CI
Sbjct:  194 VMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTA--DGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSG-KLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDHA-CI 569          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 1.020e-79
Identity = 167/427 (39.11%), Postives = 227/427 (53.16%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYG--RSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAW--CIYTFGDNYREVLREQREEWEQAHGIGLEPLQLPVIPTG 1080
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  + NMDQTP+Q EMP +TT+E TG K A I+TGG+  +    V    +   DG+ V P II+KG PF+  T +                         G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++        RSG K+  P RG+V+TW KE W+ ++  T+ +CFK+CGLTL LDGSEDHA   CI    D                  + L PL+LP +P G
Sbjct:  154 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLV---LAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSG-KLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDHACTPCIAEHPD------------------VTLPPLKLPKVPEG 558          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 4.030e-78
Identity = 170/479 (35.49%), Postives = 230/479 (48.02%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA---------------------------------------------------------------------------------------------IFALMYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQK-VRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPTG 1080
            M KLL   P   GGMP+  +PE+   F+ + N+WY RF KR+  SIRR+TSVGQK P+G+EG AWA + KLR +L + A E                                                                                              +F  + NMDQTP+Q EMP +TT+EKTG K A I+TGG   Q E  +H  + C G  QK V PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+   GGLTP+ QPLDR +NK+ KR +R    S +R      G+K     RG           +I+  T+++CFK+CGLTL LDGSEDHAWC + FG++YR++L EQ   W   H  + L PL+LP +P G
Sbjct:    1 MNKLLELKPDAVGGMPANAKPEEALAFKVKLNSWYQRFRKRNGLSIRRRTSVGQKLPQGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLLSIRRRTSVGQKLPQGYEGMAWATVMKLREALVKRAGEIYARRHPPVPDKSPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGG--QREGTLHARSGCHGGRQKNVSPRIIFQGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFTPGGLTPLLQPLDRTLNKQMKRLLRGNVGSSLR-----GGRK-----RG-----------SITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPRG 456          
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Match: A0A6H5KVR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR1_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 1.300e-77
Identity = 153/379 (40.37%), Postives = 210/379 (55.41%), Query Frame = 1
Query:   52 SQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALMY-------------------------------NMDQTPIQAEMPPDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPR---IIYKGNPFVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKE-FKRGVRARYTSW-IRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIRSCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAH-GIGLEPLQLPVIPT 1077
            ++ +PE    F+ +F +WY RF KR++ SIRR+ SV QK P+G EG AW  + KLR +L E A E I+A  Y                               NMDQTP+Q EMP +TT+EKTG K A I TGG     +       + PG G+  +PR   I ++  P     +  G P GG+S GVQ+ SWCD  +   W+   +  RP + S              CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+   RG+   +T+  +RD   ++G K+  P RG VATW K  W +I+  T+++CFK+CGLTL LDGSEDHAWC++ FGD YRE+L +QR EW   H  + L PLQLP +P 
Sbjct:  224 AKPKPEGALAFKSKFKSWYQRFRKRNKLSIRRRISVDQKLPKGHEGMAWTTLMKLRKALLERAGE-IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKTGVKDARIATGGPAAHFKGTPFVSPATPGKGKATQPRKNSIAWEVLPA--NRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWELRPNNGSI-------------CHKDDGFIAALKREASTIVIFIPGGLTPLLQPLDRMLNKQRLLRGMYTAHTAKAVRDP--KTG-KLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVPA 583          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.122.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6L9_9PHAE1.090e-9842.21DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE1.020e-9141.35DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE1.100e-8639.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE1.370e-8540.42DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE1.640e-8541.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE4.190e-8240.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.130e-8041.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.020e-7939.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKC9_9PHAE4.030e-7835.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KVR1_9PHAE1.300e-7740.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:401419..403175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_015022-tr
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size1090
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.78e-39
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Descriptionpogo transposable element with KRAB domain
Cds size1086
COG categoryBD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791662.2807715-CDS-P-littoralis_Contig81:401418..4020311680791662.2807715-CDS-P-littoralis_Contig81:401418..402031Pylaiella littoralis U1_48CDSP-littoralis_Contig81 401419..402031 -
1680791662.29415-CDS-P-littoralis_Contig81:402100..4022081680791662.29415-CDS-P-littoralis_Contig81:402100..402208Pylaiella littoralis U1_48CDSP-littoralis_Contig81 402101..402208 -
1680791662.3043365-CDS-P-littoralis_Contig81:402702..4028211680791662.3043365-CDS-P-littoralis_Contig81:402702..402821Pylaiella littoralis U1_48CDSP-littoralis_Contig81 402703..402821 -
1680791662.31517-CDS-P-littoralis_Contig81:402926..4031721680791662.31517-CDS-P-littoralis_Contig81:402926..403172Pylaiella littoralis U1_48CDSP-littoralis_Contig81 402927..403172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791662.3306623-UTR-P-littoralis_Contig81:403172..4031751680791662.3306623-UTR-P-littoralis_Contig81:403172..403175Pylaiella littoralis U1_48UTRP-littoralis_Contig81 403173..403175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.122.2prot_P-littoralis_Contig81.122.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 401419..403172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.122.2

>prot_P-littoralis_Contig81.122.2 ID=prot_P-littoralis_Contig81.122.2|Name=mRNA_P-littoralis_Contig81.122.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=362bp
MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKT
SVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAIFALMYNMDQTPIQAEMP
PDTTVEKTGTKSACITTGGETVQGEAAVHRGASCPGDGQKVRPRIIYKGN
PFVGGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQ
RPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINK
EFKRGVRARYTSWIRDNYGRSGQKVTAPSRGLVATWVKEVWDNISERTIR
SCFKVCGLTLNLDGSEDHAWCIYTFGDNYREVLREQREEWEQAHGIGLEP
LQLPVIPTGDGV
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mRNA from alignment at P-littoralis_Contig81:401419..403175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.122.2 ID=mRNA_P-littoralis_Contig81.122.2|Name=mRNA_P-littoralis_Contig81.122.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1757bp|location=Sequence derived from alignment at P-littoralis_Contig81:401419..403175- (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGGCGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTATGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAGAAGACTGGTACGAAGAGCGCTTGC ATCACGACAGGAGGTGAGACGGTGTACTAAAGGTATTTCGATTGTTGAAA TTCAGTTCAAACCAACATGGTGGAGATTTTCTGACGATGGAACAAGCGGG GAATTACAAATTTGCCGACGGCGGAAAAACGGGGAATTATAATATTTTGC ATTGCTTCTGCCGTCACGTGCACGCTTTCGTTCTTCTATTGCCTGCAAGT ACGGTACGTACTGCTGTCGCCTGTACACAGCGATGAAATTATTCATATGG TATTCCGCTGAAGTATTTTTTTTAATATACATATGTTTTGGGGGGCAATA TATATTTTACCGTATACACCGGAGTTTGTTTTTATTTTACTTTTTATGTT GTGGTAGGCATTACACCCCAGGAGTTAAAGGTGTGTGTTTGTTTTTTATT ATTATTTATTTTTTGTTTGTTGTGGCAGGCAATACGATTAATAATTGTAC TGCTTTGCGGAGTATTTTCTTTTAACACAATTTCCTTTGTTTGCATACGC CCCAATTTTCGCACCAGGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAG CTGTCCGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGA ACCCTTTTGTCGGGGGTACCAACAAGTCAGGCCCAGCCAAGAAGCCTGGC AAGAACAGCCTGTCGTACGAGCACCTCCCAGACAAGCGGACGAGCTTCGG CTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCG ACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCA GGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTT CAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCA AGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCG CTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTA CACCAGCTGGATCCGGGACAACTACGGGCGCTCGGGGCAGAAGGTGACCG CGCCGAGCAGGGGGCTGGTCGCGACGTGGGTAAAGGAGGTGTGGGACAAC ATCTCGGAGCGGACCATCCGCTCGTGCTTCAAGGTCTGCGGTCTCACCCT CAACCTCGACGGAAGCGAGGACCACGCGTGGTGCATCTACACGTTCGGAG ACAACTACCGCGAGGTTCTTCGCGAGCAGCGCGAGGAGTGGGAGCAAGCG CACGGCATCGGGCTCGAACCGCTCCAGCTACCGGTCATCCCTACCGGAGA CGGCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:401419..403175-

>mRNA_P-littoralis_Contig81.122.2 ID=mRNA_P-littoralis_Contig81.122.2|Name=mRNA_P-littoralis_Contig81.122.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig81:401419..403175- (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATT
CATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCATCT
TCGCCCTTATGTACAACATGGACCAGACCCCGATCCAGGCTGAGATGCCG
CCGGACACCACGGTGGAGAAGACTGGTACGAAGAGCGCTTGCATCACGAC
AGGAGGTGAGACGGTGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCT
GTCCGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAAC
CCTTTTGTCGGGGGTACCAACAACTTCGGCTACCCGGCTGGCGGCATCAG
CCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACGAGT
GGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGATCAG
CGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGAGAG
GTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGCTTG
GTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACAAG
GAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATCCGGGACAA
CTACGGGCGCTCGGGGCAGAAGGTGACCGCGCCGAGCAGGGGGCTGGTCG
CGACGTGGGTAAAGGAGGTGTGGGACAACATCTCGGAGCGGACCATCCGC
TCGTGCTTCAAGGTCTGCGGTCTCACCCTCAACCTCGACGGAAGCGAGGA
CCACGCGTGGTGCATCTACACGTTCGGAGACAACTACCGCGAGGTTCTTC
GCGAGCAGCGCGAGGAGTGGGAGCAAGCGCACGGCATCGGGCTCGAACCG
CTCCAGCTACCGGTCATCCCTACCGGAGACGGCGTC
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