mRNA_P-littoralis_Contig81.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.107.1
Unique NamemRNA_P-littoralis_Contig81.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:356318..357220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791662.004691-UTR-P-littoralis_Contig81:356317..3568181680791662.004691-UTR-P-littoralis_Contig81:356317..356818Pylaiella littoralis U1_48UTRP-littoralis_Contig81 356318..356818 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791662.0251226-CDS-P-littoralis_Contig81:356818..3572201680791662.0251226-CDS-P-littoralis_Contig81:356818..357220Pylaiella littoralis U1_48CDSP-littoralis_Contig81 356819..357220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.107.1prot_P-littoralis_Contig81.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 356819..357220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.107.1

>prot_P-littoralis_Contig81.107.1 ID=prot_P-littoralis_Contig81.107.1|Name=mRNA_P-littoralis_Contig81.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MYYVMANARTNDGTLEDLLFVKVGATTADQTQRSRDRGVVVPSSPTPVRE
LAVDLVRQNGLDIFHADALVKYTDWNLYIYLVSTLPGSRTEVHLLWLLLY
FLFFHVSRRCSKTTRPLLLYHQCFAPPSDPDYF*
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mRNA from alignment at P-littoralis_Contig81:356318..357220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.107.1 ID=mRNA_P-littoralis_Contig81.107.1|Name=mRNA_P-littoralis_Contig81.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig81:356318..357220+ (Pylaiella littoralis U1_48)
GACCAATCAGCTCGGTTCGTTTCACGCTCGGGAAAAGTATGCACCCTGTT
GAGTCGCAAAATGGGCAGGGTCCACCCTGTTGCGTCGTTTTCCCAAAAAA
AAGGTAAGTGCGATCGTAGCCAGGGGCCGTGCATTGTCTTGTTGGGGATT
TTTTATGCATGGACAGCCACGAAACTGAGCGAGGACAGACGAGAGAGAGT
TCAGGGTGCGTGGGCAGAGAGAAAGTCACTCAAACAACGATTGCGTTCGT
GTTTCCTACAACAAACTGTTAGCTTTTTGACTACCGCTGCTGCTGTGTAC
TACGTGTGAGTGGAAGCTGAATTGATATCTGTGTATCAATTGTCCCCCTT
ACACGGGTGTTCGTGCGACTAGGTATGCATAGCGCGGCACTCGACACCCC
CAAGGCGGCCGCTTGGGCCAACGGCAAGGTTTCGGGTGGGAGGACATTGT
TGCCGTGTTTATCTTGCAAGATCCCCAAGGATGACCTCGGCGATGAGATA
GATGTATTATGTAATGGCGAACGCGCGTACGAATGACGGTACGCTGGAGG
ATTTGCTGTTTGTTAAAGTAGGGGCTACAACAGCAGACCAAACGCAACGC
TCGCGGGATAGGGGGGTGGTCGTCCCATCTTCACCAACTCCAGTACGAGA
GCTCGCTGTCGACTTGGTCCGTCAAAACGGATTAGATATTTTCCATGCAG
ACGCCCTCGTAAAGTATACAGATTGGAACCTTTATATTTACCTTGTGTCG
ACACTACCCGGTAGTCGCACTGAAGTCCATCTCCTCTGGTTACTGTTGTA
TTTCTTGTTCTTTCATGTTTCACGCCGATGCTCAAAAACCACCCGACCTC
TTCTTTTATACCACCAATGTTTTGCGCCGCCGTCCGACCCTGACTATTTT
TAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:356318..357220+

>mRNA_P-littoralis_Contig81.107.1 ID=mRNA_P-littoralis_Contig81.107.1|Name=mRNA_P-littoralis_Contig81.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig81:356318..357220+ (Pylaiella littoralis U1_48)
ATGTATTATGTAATGGCGAACGCGCGTACGAATGACGGTACGCTGGAGGA
TTTGCTGTTTGTTAAAGTAGGGGCTACAACAGCAGACCAAACGCAACGCT
CGCGGGATAGGGGGGTGGTCGTCCCATCTTCACCAACTCCAGTACGAGAG
CTCGCTGTCGACTTGGTCCGTCAAAACGGATTAGATATTTTCCATGCAGA
CGCCCTCGTAAAGTATACAGATTGGAACCTTTATATTTACCTTGTGTCGA
CACTACCCGGTAGTCGCACTGAAGTCCATCTCCTCTGGTTACTGTTGTAT
TTCTTGTTCTTTCATGTTTCACGCCGATGCTCAAAAACCACCCGACCTCT
TCTTTTATACCACCAATGTTTTGCGCCGCCGTCCGACCCTGACTATTTTT
AA
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