mRNA_P-littoralis_Contig81.89.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.89.1
Unique NamemRNA_P-littoralis_Contig81.89.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: D8LCA4_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA4_ECTSI)

HSP 1 Score: 631 bits (1628), Expect = 6.640e-219
Identity = 356/558 (63.80%), Postives = 399/558 (71.51%), Query Frame = 1 
Query:   97 SSLLASASLVMLLTPHLWSSCAAFVIGCPPCDSSSTSSSTYRPSPAAARAGSGWVAPPATSTANDPPKRAWLASCRRCYSPPLECRARKQSEEQLAYYHAGDNSPDATGIPARHRRGMHSRHAMPSKRNGIKRNRHCLRAKSHKGEDSEGDVMDAEFSDDINEIVKADLASVGK--RRDKPEKTAAPRKAVQKVVSKAKGTRAPXXXXXXXXXXGAGFTSLEDAATSGEFVDLSNGRDSCLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDWIDLAAVYNAVPGKVETDKELRDRWSEDLAAGTSPLEDEAGLKKKMQEEMAAKAGTTPPNTDHRGKKIYDLKSDEAREIMAKQKIQGYTPDFGYVEKMDSFDLYIPVPEGTRARDVTVEIHPECMLVVVKGAGVVTKGRFYGKVALDGCYWLMSDLSLDPPGDAALGTQDDEVRFGPVYRGETCVQVFLEKMKPFDTLWENVYRPPGDDGD 1764
            S++LAS SL +LL+P LW    AFV+  PP D    S   +  S  AA A S W   P T+   D P R    S  RC+ P  +  +            A +      G          SR  +   R G            ++ E  E +V+DAEFSDD ++IV+AD AS  K  R +KP                A  T  P XXXXXXXX G+GF SLE+A  SGEF DLS GR SCLKRVDE GFE+DGNPPKGSKIKVHYKMKV+ GENIASSGEDR KPFEF LGRWP EATHGWDKA+SAMH+GEVATLICGPQYAFG AGAPPRIPP+ATVETRLEL DW+DLAA YNAVPGKVETD+ELR+RWSEDLA GTSP++DEAGL KK+Q EM+AKA  TP NTDHRGKKIYDL+S EAREIMAKQK+QGYTPDFGYVE+ +  DLYIPVP GTRA+DVTVEIHP+ MLVVVKG GVVT+G F GKVALDGC+WLMSDLSLDPPG  ALGTQDDEVR GPVYRGETCVQVFLEK KPFDTLWENVYRP  +DGD
Sbjct:    5 SNVLASVSL-LLLSPQLWHLSVAFVVVHPPSDHGGASHGRF--SERAAAAASQWARAPTTAVHADSPGRTRQGSRCRCHPPSFDSSSXXXXXXXXXXXXASEGRV-VGGAGRXXXXXXXSRQRLLQARPG------------NEVEPPEREVIDAEFSDDFSKIVEADRASKRKKPREEKPAXXXXXXXXXXXXXXXAAST--PAXXXXXXXXAGSGFASLEEALASGEFADLSGGRGSCLKRVDEDGFETDGNPPKGSKIKVHYKMKVVDGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAAGAPPRIPPNATVETRLELEDWLDLAAEYNAVPGKVETDEELRERWSEDLADGTSPMKDEAGLNKKLQAEMSAKASATPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQGHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWENVYRPR-EDGD 543
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A835YYM1_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 9.310e-42
Identity = 99/294 (33.67%), Postives = 151/294 (51.36%), Query Frame = 1 
Query:  988 GWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDWIDLAAVYNAVPGKVETDKELRDRWSEDLAAGTSPLEDEAGLKKKMQEEMAAKAGTTPPNTDHRGKKIYDLKSDEAREIMAKQKIQGYTPDFGYVEKMDSFDLYIPVPEGTRAR--------------------------------------DVTVEIHPECMLVVVKGAG-----VVTKGRFYGKVALDGCYWLMSDLSLDPPGDAALGTQDDEVRFGPVYRGETCVQVFLEKMKPFDTLWENVY 1740
            GWD AV  M KGE A++IC PQYA+G+AGAPP+IPP A++E  LEL+DW D+AA Y+      ET +E  +RW +++ +GTSP++++ G +  ++        T   +   +GK + D+   + R   A+Q + G    + Y+EK    DLY+ VPEGTRA                                       DV  +I P  + + +          + +G  +G+VALDG YW+MS+++ +     A      +V FG   RG   VQV+LEK+ P DT+W +V+
Sbjct:    3 GWDVAVQTMEKGERASIICSPQYAYGEAGAPPKIPPGASLECELELLDWEDVAARYSEYARPGETHEERMERWEQEIESGTSPIKEDVGPQPGIR--------TVTADEVTKGKMV-DVNDPQVRRAAARQLVCGQGEGYTYLEKGAFLDLYVTVPEGTRAXXXXXXXXXXXXXXXXXAANEXXXXXXXXXXXXXXXXXADVLCDIAPRRLSLRITAQPDAPPLTILEGTLHGRVALDGSYWVMSEVAPE-----AYDELRSDVGFGLTARG-AFVQVYLEKLPPDDTIWPDVF 281
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: E2B9Y2_HARSA (Peptidylprolyl isomerase n=4 Tax=Ponerini TaxID=141711 RepID=E2B9Y2_HARSA)

HSP 1 Score: 112 bits (280), Expect = 1.240e-22
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  781 VDLSNGRDS-CLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            VDLS  +D+  LK + + G + D  P  G K+KVHY   +L G    SS +DRGKPF+F LGR       GWD  V++M KGE+ATL C P+YA+GK G+PP IPPDAT++  +EL+ W
Sbjct:    4 VDLSPAKDNGVLKEITQEG-QGDDTPTVGCKVKVHYTGTLLDGTKFDSS-KDRGKPFKFDLGRG--SVIKGWDIGVASMKKGEIATLTCAPEYAYGKNGSPPLIPPDATLKFEVELLSW 118
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A7S3MPV9_9SPIT (Peptidylprolyl isomerase (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MPV9_9SPIT)

HSP 1 Score: 101 bits (251), Expect = 2.470e-21
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:  811 LKRVDEAGFESDGNPPKGSKIKVHYKMKV-LGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            LKR++  G      PP+GS + VHY+ ++ + GE   SS  DRGKPF+FTLG    +   GW+ AV AM KGE A++ C PQYA+GK G PP IPPDAT+   +EL+D+
Sbjct:   11 LKRIEREGEGIS--PPRGSTVTVHYEGRLAVSGERFDSS-RDRGKPFKFTLGEG--KVIGGWEVAVGAMAKGERASITCSPQYAYGKKGIPPLIPPDATLVFDVELIDF 114
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: E2A2F6_CAMFO (Peptidylprolyl isomerase n=3 Tax=Formicinae TaxID=7479 RepID=E2A2F6_CAMFO)

HSP 1 Score: 107 bits (266), Expect = 7.410e-21
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  781 VDLSNGRDS-CLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            +DLS  +D   LK + + G E D  P  G K+KVHY   +L G    SS +DR KPF+F LGR        WD  +++M KGEVA L C P+YA+GK G+PP IPPDAT++  +EL+DW
Sbjct:    4 IDLSPAKDKGVLKEIIKEG-EGDETPTTGCKVKVHYTGTLLDGTKFDSS-KDRDKPFKFDLGRG--SVIKAWDIGIASMKKGEVAILTCAPEYAYGKDGSPPSIPPDATLKFEVELLDW 118
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A6J1PP45_9HYME (Peptidylprolyl isomerase n=2 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1PP45_9HYME)

HSP 1 Score: 105 bits (261), Expect = 3.180e-20
Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:  781 VDLSNGRD-SCLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            +DLS  +D   LK + + G   D  P  G K+KVHY   +L GE   SS  DR KPF+F +G         WD  +++M KGE+A L C P+YA+GK+G+PP IPPDAT++  +EL+DW
Sbjct:    4 IDLSPAQDRGVLKEIIKEGV-GDETPTNGCKVKVHYTGTLLNGEKFDSS-RDRDKPFKFVVGS--NSVIKAWDIGIASMKKGEIAVLTCAPEYAYGKSGSPPSIPPDATLKFEVELLDW 118
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A0L7KRI6_9NEOP (Peptidylprolyl isomerase (Fragment) n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KRI6_9NEOP)

HSP 1 Score: 97.4 bits (241), Expect = 3.410e-20
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1 
Query:  781 VDLSNGRDSCLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            VD+S  R   LKR+ + G  SD  P  G ++ VHY   ++ G    SS +DR +PFEF LG+        WD  V+ M KGEV  L C P+YA+G AG+PP+IPP++ ++  +E++DW
Sbjct:    7 VDISGDR-GVLKRIIQEGEGSD-TPNPGCQVTVHYTGTLVDGSKFDSS-KDRNEPFEFQLGK-------AWDVGVATMKKGEVCVLTCAPEYAYGAAGSPPKIPPNSILQFEIEMIDW 114
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A2A4IZY8_HELVI (Peptidylprolyl isomerase n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IZY8_HELVI)

HSP 1 Score: 99.4 bits (246), Expect = 3.420e-20
Identity = 57/137 (41.61%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:  766 TSGEFVDLSNGRD-SCLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDWIDLAAVYNAVPGK 1173
            T  E VD++   D   LKR+ + G  +D  P  G ++ VHY   +L G    SS  DR +PFEF LG+        WD  V+ M KGEV  L C P YA+G AG+PP+IPP+AT++  +E++DW     V +  PGK
Sbjct:    2 TVDEGVDITKTGDRGVLKRIIKEGTGTD-TPNPGCQVTVHYTGTLLDGTKFDSS-RDRNEPFEFNLGKG--SVIKAWDIGVATMKKGEVCVLTCAPLYAYGNAGSPPKIPPNATLQFEIEMIDW----KVEDLSPGK 130
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: A0A6P3Y6P4_DINQU (Peptidylprolyl isomerase n=2 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3Y6P4_DINQU)

HSP 1 Score: 104 bits (259), Expect = 6.150e-20
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  781 VDLSNGRDS-CLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDW 1134
            +DLS  +D+  LK + + G + D  P  G K+KVHY   +L G    SS +DRGKPF+F LGR        WD  V++M KGEVA L C P+YA+GK G+ P IPPDAT++  +EL+ W
Sbjct:    4 IDLSPAKDNGVLKEIIQEG-QGDETPTVGCKVKVHYTGTLLDGTKFDSS-KDRGKPFKFDLGRG--SVIKAWDIGVASMKKGEVAILTCAPEYAYGKNGSQPLIPPDATLKFEVELISW 118
[Close]
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Match: UPI00043FFF05 (FK506-binding protein 59 isoform X1 n=2 Tax=Microplitis demolitor TaxID=69319 RepID=UPI00043FFF05)

HSP 1 Score: 103 bits (258), Expect = 7.600e-20
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:  781 VDLSNGRDS-CLKRVDEAGFESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATHGWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDWI 1137
            VD+S   D   LK + + G   +  P  GSK+KVHY   +L G    SS +DR +PFEF L +        WD  V+ M KGEVA L C P+YA+GK+G+PP+IPPDAT++  +E++DW+
Sbjct:    3 VDISPKNDGGVLKEIIKEGLGEE-TPSPGSKVKVHYTGTLLDGSKFDSS-KDRNEPFEFNLAQG--NVIKAWDIGVATMKKGEVAILTCAPEYAYGKSGSPPKIPPDATLKFEVEVLDWV 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCA4_ECTSI6.640e-21963.80Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YYM1_9STRA9.310e-4233.67Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
E2B9Y2_HARSA1.240e-2249.58Peptidylprolyl isomerase n=4 Tax=Ponerini TaxID=14... [more]
A0A7S3MPV9_9SPIT2.470e-2149.54Peptidylprolyl isomerase (Fragment) n=1 Tax=Favell... [more]
E2A2F6_CAMFO7.410e-2147.90Peptidylprolyl isomerase n=3 Tax=Formicinae TaxID=... [more]
A0A6J1PP45_9HYME3.180e-2045.38Peptidylprolyl isomerase n=2 Tax=Temnothorax curvi... [more]
A0A0L7KRI6_9NEOP3.410e-2042.37Peptidylprolyl isomerase (Fragment) n=1 Tax=Operop... [more]
A0A2A4IZY8_HELVI3.420e-2041.61Peptidylprolyl isomerase n=1 Tax=Heliothis viresce... [more]
A0A6P3Y6P4_DINQU6.150e-2047.06Peptidylprolyl isomerase n=2 Tax=Dinoponera quadri... [more]
UPI00043FFF057.600e-2045.00FK506-binding protein 59 isoform X1 n=2 Tax=Microp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:309567..314884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCA4
PFAMsFKBP_C
Model size2076
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons6
Evalue3.07e-220
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-14_005490.1
DescriptionFK506 binding
Cds size1737
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.89.1prot_P-littoralis_Contig81.89.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 309654..314632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.671372-UTR-P-littoralis_Contig81:309566..3096531680791661.671372-UTR-P-littoralis_Contig81:309566..309653Pylaiella littoralis U1_48UTRP-littoralis_Contig81 309567..309653 +
1680791661.7695143-UTR-P-littoralis_Contig81:314632..3148841680791661.7695143-UTR-P-littoralis_Contig81:314632..314884Pylaiella littoralis U1_48UTRP-littoralis_Contig81 314633..314884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.6832213-CDS-P-littoralis_Contig81:309653..3098711680791661.6832213-CDS-P-littoralis_Contig81:309653..309871Pylaiella littoralis U1_48CDSP-littoralis_Contig81 309654..309871 +
1680791661.6931531-CDS-P-littoralis_Contig81:310417..3109821680791661.6931531-CDS-P-littoralis_Contig81:310417..310982Pylaiella littoralis U1_48CDSP-littoralis_Contig81 310418..310982 +
1680791661.713711-CDS-P-littoralis_Contig81:311510..3116001680791661.713711-CDS-P-littoralis_Contig81:311510..311600Pylaiella littoralis U1_48CDSP-littoralis_Contig81 311511..311600 +
1680791661.7271063-CDS-P-littoralis_Contig81:312835..3131271680791661.7271063-CDS-P-littoralis_Contig81:312835..313127Pylaiella littoralis U1_48CDSP-littoralis_Contig81 312836..313127 +
1680791661.7381454-CDS-P-littoralis_Contig81:313488..3136941680791661.7381454-CDS-P-littoralis_Contig81:313488..313694Pylaiella littoralis U1_48CDSP-littoralis_Contig81 313489..313694 +
1680791661.7552435-CDS-P-littoralis_Contig81:314266..3146321680791661.7552435-CDS-P-littoralis_Contig81:314266..314632Pylaiella littoralis U1_48CDSP-littoralis_Contig81 314267..314632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.89.1

>prot_P-littoralis_Contig81.89.1 ID=prot_P-littoralis_Contig81.89.1|Name=mRNA_P-littoralis_Contig81.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=579bp
MSTSSLLASASLVMLLTPHLWSSCAAFVIGCPPCDSSSTSSSTYRPSPAA
ARAGSGWVAPPATSTANDPPKRAWLASCRRCYSPPLECRARKQSEEQLAY
YHAGDNSPDATGIPARHRRGMHSRHAMPSKRNGIKRNRHCLRAKSHKGED
SEGDVMDAEFSDDINEIVKADLASVGKRRDKPEKTAAPRKAVQKVVSKAK
GTRAPAPAPTPFSFAGAGFTSLEDAATSGEFVDLSNGRDSCLKRVDEAGF
ESDGNPPKGSKIKVHYKMKVLGGENIASSGEDRGKPFEFTLGRWPCEATH
GWDKAVSAMHKGEVATLICGPQYAFGKAGAPPRIPPDATVETRLELVDWI
DLAAVYNAVPGKVETDKELRDRWSEDLAAGTSPLEDEAGLKKKMQEEMAA
KAGTTPPNTDHRGKKIYDLKSDEAREIMAKQKIQGYTPDFGYVEKMDSFD
LYIPVPEGTRARDVTVEIHPECMLVVVKGAGVVTKGRFYGKVALDGCYWL
MSDLSLDPPGDAALGTQDDEVRFGPVYRGETCVQVFLEKMKPFDTLWENV
YRPPGDDGDGGDVDGAPASRAAAAEVAD*
back to top

mRNA from alignment at P-littoralis_Contig81:309567..314884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.89.1 ID=mRNA_P-littoralis_Contig81.89.1|Name=mRNA_P-littoralis_Contig81.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5318bp|location=Sequence derived from alignment at P-littoralis_Contig81:309567..314884+ (Pylaiella littoralis U1_48)
GCAGGAGAGAGCCGGACCCAAGCAGCAGACAGCACGGCAGTATCACATGC
AGCGGGGATCATCAGACCGAACTTCAAGCACATACGTATGTCCACATCAT
CATTGTTAGCATCAGCCAGCTTGGTGATGCTATTAACCCCCCATCTATGG
TCTTCTTGTGCTGCCTTTGTGATCGGGTGCCCTCCTTGTGACAGCAGCAG
TACCAGTTCCTCCACATATCGACCGAGTCCAGCAGCTGCTAGAGCAGGGT
CGGGCTGGGTAGCGCCACCAGCCACTTCTACCGCCAACGACCCGCCAAAA
CGAGCGTGAGTGGCATCGTGTTGTAGCATGCATCTTGGCACCCTATCGAA
GTCGAAGAGCTTTCGCGATTCTGTGAATACCGATACTGCATCAAATATGG
TGAGTTTATTTCTTGTCCAACAATCTTTTGTCTCCTCTGCAAACCCACTT
CGTCGACACGAAATACGCAAACCGTTCATGTTTGAGTCTGCTGACCTGCC
GCCGTCTCATCAATAGCGATGCATCGGGAGTCACTTAAGTCTGCAGAGGG
AAGTGTTGCAGCGATTGCAGCTCGTTACACTCAGATTAATTATAAGGGGT
GCGAATTACTCCGAAGCAGTGATGAACCAAAGCAGCAGGTTACAGCAGCA
TCACAGCTAGTAAACTCTCCTCACGGCAGTATGACTGAAAGTAAAGCTTG
TGGACCTGCCGCACCGACTAGGGTGTAATCTTCCACTTCCAACCTTCATA
TTCTCGACCCTAATTGTTTTGACACACCACCTTGTAACGCAAAGCACCCC
GACTCCACATTGATATGCCTCCACCGCGCGCTCCGCTCCGACGCATTTCA
GCTGGCTAGCTTCGTGCCGTCGATGTTACTCGCCCCCACTAGAATGTCGA
GCGAGGAAACAGTCAGAGGAGCAACTCGCCTACTACCACGCTGGTGACAA
CAGCCCAGATGCAACCGGCATCCCTGCCAGACACCGCCGCGGTATGCACA
GCAGACACGCGATGCCGTCGAAGCGAAATGGGATTAAACGGAATCGCCAT
TGCCTGCGAGCAAAGTCGCACAAGGGAGAGGATTCTGAAGGCGATGTGAT
GGACGCGGAGTTTTCAGACGACATCAACGAGATCGTGAAGGCGGATCTAG
CGAGTGTGGGGAAAAGGCGGGACAAGCCAGAAAAAACAGCAGCTCCTCGC
AAGGCCGTCCAGAAGGTGGTTAGCAAGGCGAAGGGCACAAGAGCTCCTGC
CCCAGCTCCCACTCCTTTCTCCTTCGCGGGCGCTGGTTTTACGTCTTTGG
AAGATGCCGCCACCTCGGGCGAGTTCGTTGATCTGTCAAACGGGCGTGAT
TCGTGTCTAAAGCGCGTGGACGAAGCCGGATTCGAGAGCGACGGAAATCC
GCCCAAAGGCTCTAAGGTGTGAGCGGTACGTTAGGAGTTTGTCACTTTTG
TTCAATAATCCCTTGGCCGAGTTTTGCCCCCCAGCGAACGACTTCACACA
CGCAACCTCGACCTCGTTCGGGCACAGGTAGGATTCACCAGGGCCGGCAC
CTTTTTGTGTGCGCGCGCAATACTCCCAAATGTTCTTTTTCTTTGAAAGG
CGGAACAGCGTGCGCTAGGCTTGCACTTAACGCTTCTGTCACGGAAGTAT
CTTTTGAGGTTTGTAGTTTTCATGTCAAAACCCGTCCGCCGGCCGCGTAC
GCGTCTCATGTGTTTTTCAGCCCCTTCACCACAACATGGCCGGCATGAAA
GGATCACGACGAATTCACTGCCCCCAGCTGCCGCAACCATACCTTGCCAA
AAGTTACCGGTATCATACCTACCGCTCTCGTGCCTCTCGAGTTTGGCTTC
GACCACGTTCCGCCTCTTTGCCTGCATTATTCCATCTTTCAATCGATGCA
CTCACACGTCGCTCCTGCTGCTACCGCTGTACCTCGCACCAAAGATCAAG
GTGCACTACAAGATGAAAGTTCTCGGCGGGGAGAATATTGCCTCTAGTGG
AGAAGACCGAGGCAAACCCTTTGAATTCACGTTGGTGAGGTTCGAACATT
TCAGAGGGGGGGCGGGTAGTGCCCTATTTTCGGTACGAGTAGCCAAACCA
ACCGATGAAACCTATGCAGGGCGGAATGGAAAGCACAGCAGTTAGCGTTT
GGTGTTGATGTCAGTGTTTCCTTTTGGTCTTTGTTCCGACCGCTTTGGTC
TCCATCTCAACCGCTTTGATGTGATGTCCACCTCGTTCATCGCCTCGATC
CCCGTGGCGACAGAGTGCTCCGCGAGCGTAGCTCTCGTACCCTTTCCACT
CCCGCCTTGGTCGTCAGTGAACGCTCATTTTCCTCCAGAGCACTGATAGG
CGGTGCATGCTTCGTCAGGTTTTTAGCGCGGTGTTTCGATCTCGCGTACT
CTGAGCATTGCTATCAAGCAGAGGGGCGACCACGATACGAGGGCTACGTC
CGCGGAACAACTTGCCACCAGGAGATCAAGGCGAGGAAAACAAGTACTTG
TTCCCGAAGGCCCCAACCTCCTCCTCGACCTCTTCGATCTCCGTCCCGAT
CTTCGCCTCGATCTCCGTGGTGACAGATTTCTCCGTAGGCGAAGCTCTCG
TATCGCATCGCCCGCAGAGAGCACACTTCGGCGGCGCATGCTTCGTCAGG
TGCATATATTAGCGCGGTGTTGCGAAGTCGAGAACGATGAGCGCCGCCGG
CGAGCACGCGGGTGGTAGCGGTGTACGAGAGCTTCTCACGCGGAGCAATG
TGTCACCGCGGAGGCCGAGCGAAGATCGAGGCGAAGATCGAGGCGGTCGA
GAGAAGGAGATCGCTGCCTTCGGGAACAAGAACTTTTTCTTTGCCGCGAT
ATCCGTAGTGACAGGTTTCTCCACGGACGCTGCTCTCGTATTTTTTCCTA
CTCCCCTGCCCGTCAGCGGCGCTCCCAGCACTCGAGATCGCAACACCGTG
CCGTAAACCTGCGAAGCATGCACCGCCAAACAGTGCTCGGAGATCTACGC
GGTCGGGAACAAGGACTAATGTTTCGTACCGTTTGTGCTGAAGTTGTGTT
GGTGAATGAGCATGCTCTCCAGAGCCATTGTTTGTGGCCAGTTTGACCTG
CAGTCTTCATGAATGTCAGAGAACTCACCCTGGGGGACGGCCCATCACCA
CGAGCCTCCTTGGTATCCTGCAACATCACATTCGCGGTCTGTGTGGGTAA
CGTGCATGTTCCTTTCGTCTGTGTGTGTGTGTTTTTTTTTTACTCGTGCA
ATCTTAACAACCAACGTAGGGACGCTGGCCGTGCGAGGCCACGCACGGCT
GGGACAAGGCCGTGTCGGCCATGCACAAGGGGGAGGTCGCCACCCTCATC
TGCGGGCCGCAGTACGCCTTCGGCAAGGCCGGGGCACCGCCCAGAATCCC
TCCCGACGCGACCGTGGAGACAAGGCTGGAGTTGGTTGACTGGATCGACC
TCGCCGCGGTGTACAACGCGGTCCCGGGCAAGGTGGAGACGGACAAAGAG
CTGAGGGATAGGTGGAGCGAGGATCTGGCGGCCGGTACCAGCCCCTTGGA
GGATGAAGCAGGTGCGCAGAGAAAATTGGCGGACATAGTTCGGAGATGGG
AGTCGGGGGGGTCTGGGTGGGGGGGCGTTGCGTATAAGATTTTGGGGGGA
GAGGGTATGTGGGTAGAGGTCCGGGGGGGGGGGAGTCAGGTTGATTTTTG
CTTTCAGATGGACGAACAGCAGTTGCAGTGCGTGTGGCATGTTGGCGCTT
TTTCCCACAGTCACTGTCACGTTCGTCGTGCAAGGAAGTTGTTTGCCACA
TGATCGTTTTTGCTCGCGACCATCTCACCTTCCCCCTGGTTGAGTGTTCT
GATCTACCCCGCGCTGAACTTCAACCCCCTTACGTTTGCTAGCTTGCCCT
CCGCCCCGAACGCCACGGCCAGGGCTGAAAAAAAAAATGCAGGAAGAGAT
GGCGGCAAAGGCAGGTACAACTCCTCCAAACACTGACCACCGAGGCAAGA
AGATCTACGATCTCAAGAGCGACGAGGCGCGCGAGATCATGGCCAAACAA
AAGATACAGGGATACACGCCCGACTTCGGGTACGTGGAGAAGATGGACTC
CTTCGACCTCTACATCCCTGTTCCCGAGGTGCGCGCGGGCCGCGTGAAGC
GCAGTGACTATGTGCACAAGATGCGTTGTTTTGGGTGTGAAGGGAGAGTG
TGTGCTGCGGACGTGGTATCGGAACCGTATGGCGTGAAGTAAATATGTCT
TTGGTCGACTTCGCTGGTTCCGATTCGGTGATCGCGTTTGTTCTTTTTCC
GTCGTGCGTGTTTTTTGTGTTTTGAGATAGATGACGGCGTAGTTGTTTTT
CTAGAGAACCGATCAGAAATAAATATGATCAAATGGGTGTGCTGGTAGTT
GCTGCCTTTGAAAGTAATTTGTTTTCGTCATATTTCCGCTCTCTTTCGTC
GCCTCTCTTGTTGGTTTCGTGTGATTTCTTTGGGTACTTTATATGCGGTC
CGGCCCCAATCATGTGTTTTCTTCTCTCTGCTTACACCCCCTCGTCTCTC
CTCATCCGTCTGCCTGCCTGTCTATCTATCTGTTACCCCCCCCTCCCCTC
CCACCCCTCTCCCTGTTTTAAATGCATATGTCTTATTTCGGTGCCCTCTG
TCTCCACACTCGTCTCCTGTCCCCCCCCGACCCTCTCACACTCTGCCCAG
GGCACCCGAGCGAGAGACGTGACCGTTGAGATCCACCCGGAATGCATGCT
CGTTGTGGTGAAAGGAGCGGGAGTCGTGACGAAGGGGCGCTTTTACGGGA
AAGTGGCCCTGGACGGCTGCTACTGGCTCATGTCGGACCTTTCCCTGGAC
CCTCCCGGCGACGCGGCGCTGGGCACGCAAGACGACGAAGTGCGCTTCGG
GCCCGTTTACCGCGGAGAGACGTGCGTGCAGGTGTTCCTCGAAAAGATGA
AGCCGTTCGACACGCTGTGGGAGAACGTCTACCGACCACCGGGAGATGAT
GGTGATGGTGGTGATGTTGATGGTGCACCGGCGAGTAGAGCGGCGGCGGC
GGAGGTGGCTGACTGACTGAGGCGGGAACGGGGGGTGGGAAGTGATGGAG
CAGATGAGCAGATGCTGCGTCCTCGGTTTGGCGCTTTGATCATGCCGCCT
ATGATGTGCGATACTCGCAGAATGTTCGTGAATGAGTCATCGGTTGTCGT
ATCGTGGTTTCAATAAAAGAGGTTTCGGTCAAGAGCGTTGCATTCTCTGC
GTTGTGACAGGGGTAATCCAACCTGTTGTGCTCGACAGGGTCGTTTAGAG
AGGGGGGGTATCATCGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:309567..314884+

>mRNA_P-littoralis_Contig81.89.1 ID=mRNA_P-littoralis_Contig81.89.1|Name=mRNA_P-littoralis_Contig81.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1737bp|location=Sequence derived from alignment at P-littoralis_Contig81:309567..314884+ (Pylaiella littoralis U1_48)
ATGTCCACATCATCATTGTTAGCATCAGCCAGCTTGGTGATGCTATTAAC
CCCCCATCTATGGTCTTCTTGTGCTGCCTTTGTGATCGGGTGCCCTCCTT
GTGACAGCAGCAGTACCAGTTCCTCCACATATCGACCGAGTCCAGCAGCT
GCTAGAGCAGGGTCGGGCTGGGTAGCGCCACCAGCCACTTCTACCGCCAA
CGACCCGCCAAAACGAGCCTGGCTAGCTTCGTGCCGTCGATGTTACTCGC
CCCCACTAGAATGTCGAGCGAGGAAACAGTCAGAGGAGCAACTCGCCTAC
TACCACGCTGGTGACAACAGCCCAGATGCAACCGGCATCCCTGCCAGACA
CCGCCGCGGTATGCACAGCAGACACGCGATGCCGTCGAAGCGAAATGGGA
TTAAACGGAATCGCCATTGCCTGCGAGCAAAGTCGCACAAGGGAGAGGAT
TCTGAAGGCGATGTGATGGACGCGGAGTTTTCAGACGACATCAACGAGAT
CGTGAAGGCGGATCTAGCGAGTGTGGGGAAAAGGCGGGACAAGCCAGAAA
AAACAGCAGCTCCTCGCAAGGCCGTCCAGAAGGTGGTTAGCAAGGCGAAG
GGCACAAGAGCTCCTGCCCCAGCTCCCACTCCTTTCTCCTTCGCGGGCGC
TGGTTTTACGTCTTTGGAAGATGCCGCCACCTCGGGCGAGTTCGTTGATC
TGTCAAACGGGCGTGATTCGTGTCTAAAGCGCGTGGACGAAGCCGGATTC
GAGAGCGACGGAAATCCGCCCAAAGGCTCTAAGATCAAGGTGCACTACAA
GATGAAAGTTCTCGGCGGGGAGAATATTGCCTCTAGTGGAGAAGACCGAG
GCAAACCCTTTGAATTCACGTTGGGACGCTGGCCGTGCGAGGCCACGCAC
GGCTGGGACAAGGCCGTGTCGGCCATGCACAAGGGGGAGGTCGCCACCCT
CATCTGCGGGCCGCAGTACGCCTTCGGCAAGGCCGGGGCACCGCCCAGAA
TCCCTCCCGACGCGACCGTGGAGACAAGGCTGGAGTTGGTTGACTGGATC
GACCTCGCCGCGGTGTACAACGCGGTCCCGGGCAAGGTGGAGACGGACAA
AGAGCTGAGGGATAGGTGGAGCGAGGATCTGGCGGCCGGTACCAGCCCCT
TGGAGGATGAAGCAGGGCTGAAAAAAAAAATGCAGGAAGAGATGGCGGCA
AAGGCAGGTACAACTCCTCCAAACACTGACCACCGAGGCAAGAAGATCTA
CGATCTCAAGAGCGACGAGGCGCGCGAGATCATGGCCAAACAAAAGATAC
AGGGATACACGCCCGACTTCGGGTACGTGGAGAAGATGGACTCCTTCGAC
CTCTACATCCCTGTTCCCGAGGGCACCCGAGCGAGAGACGTGACCGTTGA
GATCCACCCGGAATGCATGCTCGTTGTGGTGAAAGGAGCGGGAGTCGTGA
CGAAGGGGCGCTTTTACGGGAAAGTGGCCCTGGACGGCTGCTACTGGCTC
ATGTCGGACCTTTCCCTGGACCCTCCCGGCGACGCGGCGCTGGGCACGCA
AGACGACGAAGTGCGCTTCGGGCCCGTTTACCGCGGAGAGACGTGCGTGC
AGGTGTTCCTCGAAAAGATGAAGCCGTTCGACACGCTGTGGGAGAACGTC
TACCGACCACCGGGAGATGATGGTGATGGTGGTGATGTTGATGGTGCACC
GGCGAGTAGAGCGGCGGCGGCGGAGGTGGCTGACTGA
back to top