mRNA_P-littoralis_Contig81.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.75.1
Unique NamemRNA_P-littoralis_Contig81.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:267065..270453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1383
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005540.1
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.0808313-UTR-P-littoralis_Contig81:267064..2681571680791661.0808313-UTR-P-littoralis_Contig81:267064..268157Pylaiella littoralis U1_48UTRP-littoralis_Contig81 267065..268157 -
1680791661.134034-UTR-P-littoralis_Contig81:270430..2704531680791661.134034-UTR-P-littoralis_Contig81:270430..270453Pylaiella littoralis U1_48UTRP-littoralis_Contig81 270431..270453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.0944102-CDS-P-littoralis_Contig81:268157..2682681680791661.0944102-CDS-P-littoralis_Contig81:268157..268268Pylaiella littoralis U1_48CDSP-littoralis_Contig81 268158..268268 -
1680791661.1089249-CDS-P-littoralis_Contig81:268594..2686901680791661.1089249-CDS-P-littoralis_Contig81:268594..268690Pylaiella littoralis U1_48CDSP-littoralis_Contig81 268595..268690 -
1680791661.1211653-CDS-P-littoralis_Contig81:270370..2704301680791661.1211653-CDS-P-littoralis_Contig81:270370..270430Pylaiella littoralis U1_48CDSP-littoralis_Contig81 270371..270430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.75.1prot_P-littoralis_Contig81.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 268158..270430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.75.1

>prot_P-littoralis_Contig81.75.1 ID=prot_P-littoralis_Contig81.75.1|Name=mRNA_P-littoralis_Contig81.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp
MRLFKSKETMLAWGVACTAMVFYAGTCGESSREATKSGYLAVKQNWGVAF
SQAAWSYYDNKKGSTVSGFEGRDEWNKRIKEQEKQRKN*
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mRNA from alignment at P-littoralis_Contig81:267065..270453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.75.1 ID=mRNA_P-littoralis_Contig81.75.1|Name=mRNA_P-littoralis_Contig81.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3389bp|location=Sequence derived from alignment at P-littoralis_Contig81:267065..270453- (Pylaiella littoralis U1_48)
GCGTTGGAGCGAGTACTGGGAAGATGAGGTTATTCAAGAGCAAGGAAACC
ATGCTTGCGTGGGGAGTAGCGTGCACAGCCATGGTGAGAGCTTCGAGGGC
AGGTTTCATCTTTAATACTTTTAGAACCACGCGCAAGAAAAACACGGTTG
TTTGCTATTGCTGTTCGGGAACCCTATGTTGCGCCGCGTTTGTGACACAT
TCGTGATGAAAATGCAATTATAAAAAAATGACGATATGACACACCTTGCC
CGCGTCTACGAGTATATCCTCCAAAACTCAACAGCAAGGTCTTGCGTATT
GAATATTTCATTGGATGAAAGTGAGGTTATTGCCGCGGTTATCATTATTG
CTGCGGTTATCACTGCTGCTGTTGTCTGAAGACAGACACATCAGCGAGGG
TACTGAAATTCTTTATATCGTACTGGAGTACTTCAAAGTACAACGAACAT
AAGAGCAGTAGACGTTCGCGTAGAGATCTACGCCCCTCGTAGAGCTCCGC
GCCCCTCATGTTTTTTCTTTATCGTCCAACCTCATTTTATCAGTATATAA
GAGCGGCTGTCAAAACAAACCGCGCTGAAAACATTTAGCATCTACCGTTC
CTACCGAGGTAAGCGCCACCGGTCGGCCCTGTCTCCGGACCTTTCTCTGA
GAAGCGCGTGTGTATGTGTGTGCGTGTATTTTGTGTCACCCGATCTATTT
TGGACATCCGATCTAAGCGTCTTGGCACCTTTCGGTATAAGTTGGGCGCA
CCAGCCGGGTTCACACAGCCGGACGAAGGCCAACCCAGCAGTAGTCGTTT
CTATGTTATTGTTCTCCACCTTTCTTCTGTTTTTCGAGGAGTCGAACTTT
GAACATTCGTAGTTTACTCACGAAATATTCCAGCTCAAATAATAATCGCT
CTATTTTTTCCAGGATTTGTGTGAGATAAAAACAGTTCATCTACTCGTAG
TGCAAACGACTAAATAAGGGGCTTTGTACACCAGGAAAAATCTTGACCAG
ATAACCTTCCAAAAATAACGAACCACTTTTGGGGCGGGCTATCCTGCTGT
AGCCAAAAAACGAGAGTGTCGACTTCTCCGGTGTACCGGAATACAAGGAC
GATATCGTATTGATATGTAGAGTATTCCCAGTCACATCTAATCGACCAGC
ACCCATTTTCACCCGTTCATGACCAAGTAACGGCAGGGTGAACAGATTTT
CTCTACTTGTGGTAATCTTGCATGCGGTTTTGTCCCCGTTTTGTTGTCTT
CTGATGGGTTGCGCCAACAGGCCGGCCAGAACCACAAAACATAAGTTGAA
AACCTCCACCCACCTGGGACGTTGAGCACAGCAGTTTTGAGAGCGGGTGA
TGAATCGGAGAAGTTAGAAAGGTCAGGACAAGAAATACCGAAACCACACA
CCACACAACGAACCCACACAACCCCGCATTCCACTAGAGCAGTAGTGATA
ACTCTGACCGCTCGCCCCAGTAGCACCTCCCCGTGATAAACCGGTCTATC
GTGAACCTACTGGAGTGACCCCCTCCACCCCCAGGCCGATTTTCCAAGCC
CGGTTTCCCCGTCACAAAGTCGTTGCCAACTCCAGCAAAGGGTAAAATTG
GAAACATCTCGTCGAGTGCTCTCCGAAACGCATCGGTCGAGGCTGGCACC
CTCACCGTTTTGGAGAATTGGAGGTGTAAAAACCGATCCCTGCATGGGAC
GCGGGGTACCTCAAGTAGACTAACGATATGCATCCGTGAGGCGCCTTATG
TTTTTTTTTATAGGTATTCTACGCGGGTACTTGTGGCGAAAGCTCGAGAG
AGGCAACCAAATCTGGTTATCTTGCTGTAAAGCAAAATTGGGGTGTTGCC
TTCTCTCAGGTGCTTGTGTGGAATCGTTCGATAAGATATACTTCGTATTC
CCTACGATCGAGGCTCGCAAGAAACGCCCTCACAACATCAGAGTGCTGGC
CCTACGCGCGAAATAACTGAAAGAGCTCTTTTTCTAATGTTCTTGCACGC
ATCAAATTTCCATCGCTCAGCTTTACCTGCTGTACCGTAGGCCAGTGCCT
TACGCTGTAAATAGCATCAACCAGCAGCAAGTCAACACGCGCGAACACTG
CCGACCGAGCTCACGAAGTGACCCAAATATCACTCTCTACCTTCGTGTGC
TTCGCGGTTACCGTTGGCGTCGTCCGTTCTTGCAGGCTGCATGGTCGTAC
TACGACAATAAGAAGGGAAGCACCGTCAGCGGATTTGAAGGCAGGGATGA
ATGGAACAAGAGGATTAAAGAGCAGGAGAAGCAAAGAAAAAACTGAGAGA
GAGAGATTGTCGGTGCACGACAGCATCTGATCTACCAGTCTTTAATGGAA
ACAGCTTGCGCTCGGTCTGCAACTGCTTTTTAGGGGGCGGACTACCGGGG
GGGCGGCGGCGGCGGCGGCGGCGACTGGGGGAGTGATAAATTTGTTTCGA
ATCATCCTTTAAGGCTGCAAGCCGGAATTTGTTTTTGACCAAGCCAGGCT
TGCTGATTTGACCTCCCAAAAAATGGAATGAGTAGCAGGGCTACTTTGCC
GGCAGCTTCCCCCTCCCCCCGGCTCCCACGTGGATATCTCGCCGAGGGCT
GATCAAGCGTCATGCCTAGTTACCCCGTAGAGAAAACGCCCAGTGTAATC
TATTTTGGAGGCCAAATTGGGCTGGGCTTAACCCTCTTACCCCTACAGCA
GTAGGTAGCCGAATGTCGCCACTTTGGGTCGCCATTTTGTTTACTCGTCA
CGTGGAACATCGCGTGCCTCCCAGCAGCTAAACTTTTACCTCGCTAGCCG
CTCAATTTCAGAACGCATTATTTAAGCAAGTGAATGGGTCGCCAATTATT
CACTTGCTTTCATCGAGCTTTTGTTCAGAAAAAAACTTCCATGATTTTTC
ACCGGGGGGTAAAAGGGTAAGGTGGGAAATTTGCGCGGGCTACACGCGGG
GTAAGAGATACACTGCTGGCTGTTGTTCCATGATGTCGAGAAAGACTGCG
CCAGGGGTGTGTGCAAATGTCAAATTTCCGCGCCCAGCAGTTTCAGTTGT
AGGGGAGGGAAGGTTCATGGAATTAACCAGGCGGGGTATGTACACCCCCC
CGGACATATTAAAAGTTTATGGATTGATTTGAAGCCCCCACAGCGACTCG
TTGAGAAGCGTCTTCAAAATTTGTCGTTGGCGTGCTTTCAAATTTAGATG
TGGCCAAAACTTCATGGTAGGAAAAGTGGTTTTGTGAGACGATCAGCCGC
AACAAAATCTTGACCCTGACGGTATAGAATACTAGCAATGTTTGTTGCTT
GCTGGCCCCGGAGCCTTCCAGACATGCGCAGATTGTCACCACTACTGGTC
GTGGGGGTGAAAGTGGTCACTACTTGGCCTTGGAGCACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:267065..270453-

>mRNA_P-littoralis_Contig81.75.1 ID=mRNA_P-littoralis_Contig81.75.1|Name=mRNA_P-littoralis_Contig81.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig81:267065..270453- (Pylaiella littoralis U1_48)
ATGAGGTTATTCAAGAGCAAGGAAACCATGCTTGCGTGGGGAGTAGCGTG
CACAGCCATGGTATTCTACGCGGGTACTTGTGGCGAAAGCTCGAGAGAGG
CAACCAAATCTGGTTATCTTGCTGTAAAGCAAAATTGGGGTGTTGCCTTC
TCTCAGGCTGCATGGTCGTACTACGACAATAAGAAGGGAAGCACCGTCAG
CGGATTTGAAGGCAGGGATGAATGGAACAAGAGGATTAAAGAGCAGGAGA
AGCAAAGAAAAAACTGA
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