mRNA_P-littoralis_Contig81.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.72.1
Unique NamemRNA_P-littoralis_Contig81.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A6H5KH94_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH94_9PHAE)

HSP 1 Score: 1040 bits (2688), Expect = 0.000e+0
Identity = 505/638 (79.15%), Postives = 548/638 (85.89%), Query Frame = 1
Query:  232 AAEGSDRSALLAPRAARRRSTATDRGERVA-GVGRGCHQQRRXXPSAAKRVVAAASLTILALGG-VDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIP--------GIGGRLNWYIDDVMVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRLGDKDPLKKVMVGGGKCKGDDGCHRGSXXXXXCTCEEGWVGPLCQVVHKFDDYNWEKHVDLSPRPIAVPMLLKTLGGIIVLLVAGMSFALGRQMSRTKWQYHQEL-RDASRFAGTMR 2112
            A+EGSDRSALLA RAARRR  A   G R A  +G G      XX       VAAAS T+L LG  V +GW+DPDTPE  KT RSL+DGAEYELIMSDEFEV GRSFDDGHDP+WTSTTHSDDAQTS+GLG+QQFYN+SYGTTT+GSMNITTTDEST+WRGYNPYKRKYETL+KSYRSSMVNTWNKFCFTGGIIEIDAKLPGEH+IGGLWPAFWLLGNLGRATYEASTNLIWPWSYD CD KLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPY+STTLQLAPGIP+HRPTNGELLS  +TWYEGM F +NSSLNYHFYGMHVDKTTP+EPVYRGADQAY+ADAISGLT L RTHFHEYHNYKLEW+P        G  G L WYIDD MVLGID  TVEKHGTQIP+EPSYVILNTAVSSSWGFP PCP GCDC CYDCKDPACHCAIP GFC MLPS +MI+HVRVYQNKNDS M++GC+  SHPSKLFIEAH+YRYMR GDK PLK +MVGGGKC  + GCHRG      C CEEGWVGPLCQ  HKFDD ++E+HVDLSPRPIAVP++L+ +GG+IVLLV GMSF LGRQ+S+TK QY ++L R+AS  AG MR
Sbjct:    3 ASEGSDRSALLASRAARRRGIAVCGGGRSAVSMGPGXXXXXXXXXXXXXXAVAAASWTLLVLGRRVGAGWIDPDTPEAAKTIRSLHDGAEYELIMSDEFEVSGRSFDDGHDPMWTSTTHSDDAQTSNGLGSQQFYNSSYGTTTKGSMNITTTDESTTWRGYNPYKRKYETLSKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHNIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDKCDPKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYLSTTLQLAPGIPVHRPTNGELLSPENTWYEGMQFAENSSLNYHFYGMHVDKTTPQEPVYRGADQAYIADAISGLTSLTRTHFHEYHNYKLEWVPPPPTRGDAGPRGHLKWYIDDEMVLGIDAETVEKHGTQIPNEPSYVILNTAVSSSWGFPDPCPSGCDCACYDCKDPACHCAIPSGFCNMLPSYFMIDHVRVYQNKNDSSMSIGCDIPSHPSKLFIEAHRYRYMRSGDKKPLKDLMVGGGKCNDETGCHRGKCHWGKCKCEEGWVGPLCQSTHKFDDISYEEHVDLSPRPIAVPVVLQAIGGVIVLLVLGMSFVLGRQLSKTKGQYREDLLRNASPLAGMMR 640          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A835YN37_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN37_9STRA)

HSP 1 Score: 666 bits (1719), Expect = 4.630e-224
Identity = 312/582 (53.61%), Postives = 409/582 (70.27%), Query Frame = 1
Query:  373 KRVVAAASLTILALGGVDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDP-LMNLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGI-GGRLNWYIDDVMVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRLGDKDPLKKVMVGGGKCKGDDGCH-----RGSXXXXXCTCEEGWVGPLCQVVHKFDDYNWEKHVDLSPRPIAVPMLLKTLGGIIVLLVAGMSFALGRQMSRTKWQYHQELRDASRF 2097
            KR V  A+L +L      + W+DPDTP ++ T +SL DG  ++LIMSDEF V GR+F DG DP+WT+  HSDDAQ+S+G G+  +YN S   T+ G +NITTT E T W+GYNPYK+KYE L K+++S ++ TWNKFCFTGGIIE+ A LPGEH+IGGLWPAFWLLGNLGRATYEASTNL+WPWSY+ C+ KLQ  QEISACN + HFG+H +QGRGSTEIDI+E   G    P ++   K+  PY+S TLQ+APGI  HRP         +TWYEGM++G N++ N+HFYG+ VDKT P EPVYR   Q+Y AD IS +T L RTHF+++H YKLEW PG  GG L WY+DD ++  ID  +++ +G+QIPDEPSYVILNTAV+SSWGFP+PCP GC C C+DC D  C C+   GFC  LP+ +++++VRV+Q+++D  +   C+  +HP+  FI+AH  RY+  G  +PL+K++ GGG CK DD C      RGS     C CEEGWVGP C+   KFDD+ +   V L P P+AVP+LL+ LGG + + V   +   G   SR + +  Q+L ++ R 
Sbjct:   12 KRWVRLAALGLLPCAL--ASWIDPDTPNKHTTMKSLKDGRIHKLIMSDEFNVKGRTFADGEDPMWTAELHSDDAQSSAGYGSLHYYNDSQVVTSHGCLNITTTSEKTQWKGYNPYKKKYEVLFKNFKSGLITTWNKFCFTGGIIEMRAILPGEHNIGGLWPAFWLLGNLGRATYEASTNLVWPWSYNRCNRKLQLGQEISACNGVKHFGMHAHQGRGSTEIDIIEVMAGKPGYPEIIEWDKIGLPYMSATLQVAPGIEDHRPEQDHQQQPENTWYEGMSYGPNTTQNFHFYGLLVDKTLPMEPVYRSEKQSYRADGISAITRLARTHFNDFHTYKLEWRPGADGGYLAWYLDDELLFEIDQASLDPYGSQIPDEPSYVILNTAVASSWGFPIPCPPGCACECFDCNDDKCACSFFEGFCDTLPAHFLVDYVRVFQDESDPLLTQTCDPPTHPTTAFIKAHPDRYLGNGKTEPLEKLVRGGGSCKVDDDCAGHGMCRGSWFWRSCECEEGWVGPKCRAFDKFDDFTYHHQVHLKPEPLAVPLLLRLLGGAVAIAVVSATVLAGVAKSRQRKKV-QQLAESKRL 590          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S3M1V3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1V3_9STRA)

HSP 1 Score: 521 bits (1341), Expect = 1.750e-169
Identity = 252/460 (54.78%), Postives = 318/460 (69.13%), Query Frame = 1
Query:  430 GWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDD-PLMNLGKVNSPYVSTTLQLAPGIP--LHRPTNGELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWYIDDVMVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRLGDKDPLKKVMV 1800
            GWVDPDTP+  +T +S  DG  Y+L+MSDEFE  GRSF DGHDP WT     DD QT+SG  + QFYNAS  TT  G++ ITTTDE T WRG+NPYK+KYET+++ ++S M+ +WNKFCFTGGI+E+D + PGE DIGGLWPA WLLGNLGRAT+++STNL+WPWSY  CD +LQ AQEIS C+   H+ LH  QGRG+TEID++E  PG S   P++  G +  PY S TLQLAPGIP  L RP  G L     TWY  +T+G+N+S+N  FYG ++  T  EEPV R A+++Y  DAIS +  L+  HF + H ++LEW PG  G ++WY D     GI+   ++ +GT+IP EPSYVILNTA+S+SWGFP   P GC    YDCK  +  C   PGFC  LP+ ++I HVRVYQNKND  M VGCN  SHP+K +I AH  ++   G   PLK V  
Sbjct:   27 GWVDPDTPQRKRTLKSYTDGLMYDLVMSDEFERPGRSFKDGHDPTWTGIDKPDDDQTASGKKSLQFYNASQITTRDGNLVITTTDEDTKWRGWNPYKKKYETMSRHFKSGMLQSWNKFCFTGGILEVDVQFPGESDIGGLWPAVWLLGNLGRATFQSSTNLMWPWSYTPCDRELQHAQEISGCDITTHYSLHPKQGRGATEIDMIEVMPGPSGKLPIVKNG-LQRPYNSMTLQLAPGIPAQLRRPPAGTLPEWGFTWYNNLTYGENTSINPFFYGHYLGPTKKEEPVGRTAEESYQCDAISSMMQLEDKHFKKMHTFRLEWQPGPNGYVHWYGDGKFRFGIEQSGLDPYGTEIPTEPSYVILNTAISTSWGFPN-LPPGCAGE-YDCKTDSGKCGFNPGFCKSLPAEFLIGHVRVYQNKNDPNMTVGCNPRSHPTKRYIAAHPEKFALPGAAKPLKDVRA 483          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A4D9CTT0_9STRA (GH16 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTT0_9STRA)

HSP 1 Score: 508 bits (1309), Expect = 8.580e-164
Identity = 240/460 (52.17%), Postives = 313/460 (68.04%), Query Frame = 1
Query:  427 SGWVDPDTPEEYKTTRSLYDG--AEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTR-GSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLM--NLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSH---TWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWYIDDVMVLGIDGHTVEK-HGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRLGDKD 1779
            +GWVDPD+P   + T SL D       L+MSDEF V  R+F DGHDP WT+  HSDDA+TS G GA  +YN SY +TT  G + ITTT EST W+G+NP+ +KYE   K +R +MVN+WNKFCF+GG++E   KLPG  D+GGLWPAFWL+GNLGRATYE STNL+WPWS+D CD K Q AQEISAC++  H+ L   +GRG+TEIDI+EA  G         +LG V  PY+S+TLQ++PG+  +RP  G+  +      TWY+G+ FG+ S +N +FYG  +DKT  +EP  R   Q Y ADA+S LT L  TH+ ++H Y+LEW+PG  G L WY+D  M+  +         G QIP EPSYVILNTAVS++WGFP  CP GC CTC+DC  P C C +P G C  LP+S ++++VR+YQ ++D R  +GCN    P++ FI+AH++RY R   KD
Sbjct:   28 AGWVDPDSPHSVQRTHSLRDPNLPSLRLVMSDEFNVAARTFADGHDPTWTAGDHSDDARTSVGKGALIYYNHSYASTTEEGHLKITTTSESTQWKGFNPFTQKYEIFEKEFRGAMVNSWNKFCFSGGVVEASLKLPGPSDVGGLWPAFWLMGNLGRATYEHSTNLMWPWSFDVCDRKKQEAQEISACDRTTHWDLQQNKGRGATEIDIMEAMSGKPHKVTKKGDLG-VGVPYMSSTLQVSPGVEKNRPQAGKNFTEHQEEWTWYDGLRFGEKSKMNMYFYGTLLDKTQKDEPAGRSIHQVYQADAVSALTSLSATHWDDFHTYRLEWMPGPEGYLAWYLDGEMLYDVPASAFSNVTGAQIPVEPSYVILNTAVSTTWGFPETCPAGCACTCFDCAKPECQCGLPEGLCESLPASMLVDYVRIYQLEDDERHFLGCNHPKFPTRKFIQAHRWRYQRCKQKD 486          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S2W5Y4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5Y4_9STRA)

HSP 1 Score: 488 bits (1256), Expect = 6.540e-155
Identity = 257/567 (45.33%), Postives = 338/567 (59.61%), Query Frame = 1
Query:  367 AAKRVVAAASLTILALGGVDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWI-----PGIGGRLNWYIDDVMVLGIDGHTVEKH-GTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDC--KDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRLGDKDPLKKVMVGGGKCKGDDGC---HRGSXXXXXCTCEEGWVGPLCQVVHKFDDYNWEKHVDLSPRPIAVPMLLKTLGGIIVLLVAGMSFAL 2034
            AA  VV    L    +GG   GWVDPDT +  +TTR+L DG  ++L+ SDEF+V  RSF DG DP WT+   +D   T     A QFY+    TT+ G +NITT  E+T +  ++    KY    K ++S+MV  WNKFCFTGGI+E+ A LPGE  +GGLWPA WL+GNL RATY  S+N +WPWS+D C   LQ+ Q +SACN   H+G+    GRG+ EIDILEA PG+   PL  +GK   PY ST+LQ+APGI ++RP  G +      WYEGM +G NSS+N  FYG    K        +  D  Y +DA+SG T +D+  + ++H Y+LEW      P   G + WY+DD ++ GI G T+ +H  +++P EP Y+ILNTA+SS+WGFP PCP  C C C+DC  KD  C C IPPGFC  LP+S+ I++VRVYQ  N S   VGC+T   PS  +IE H   Y    D+ PL+ V  GG  CK    C   H G      C C + W GP C     FDD  WE+  DL     + P LL+   G++++++ G  FAL
Sbjct:    6 AAGVVVPLLPLLPWVVGG---GWVDPDTAQGDRTTRALVDGRTFDLVFSDEFDVDHRSFGDGEDPRWTALHKNDYTNT-----ALQFYDKHLVTTSHGMLNITTVPETTEFLAFDDDTMKYHRSKKHFKSAMVQGWNKFCFTGGILEVKALLPGEAYVGGLWPAIWLMGNLARATYVGSSNWMWPWSFDKCSRDLQKQQLVSACNPHPHYGMLPNSGRGAPEIDILEAMPGSGALPLSTVGK---PYFSTSLQIAPGIEVNRPQGG-VWPGPGMWYEGMEYGANSSMNIFFYGTRNVK--------KNQDYTYQSDALSGNTQMDKKKWEQWHTYRLEWETKESDPLREGYIRWYMDDELIYGIRGETLSQHLDSEVPSEPMYLILNTAMSSTWGFPQPCPADCKCECFDCNSKDKQCTCGIPPGFCKSLPTSFFIDYVRVYQRTNVSAHKVGCSTPERPSTKWIEGHVDLYKDEWDEKPLRPVKRGGAPCKTSSECGAAHGGGKCSGTCVCTDKWTGPRCTAHAGFDDVVWEEEHDLGFAAPSFPFLLQ---GLVIIVIGG--FAL 547          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S1BHS0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHS0_9STRA)

HSP 1 Score: 483 bits (1244), Expect = 2.890e-152
Identity = 263/652 (40.34%), Postives = 360/652 (55.21%), Query Frame = 1
Query:  385 AAASLTILALGGVDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNGEL-------------LSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWY------IDDVMVLGIDGHTVEKH------GTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSS---YMIEHVRVYQNKNDSRM-----NVGCNTESHPSKLFIEAHKYRYMR----LGDKDPLKKVMVGGGKCKGDDGCH------------------RGSXXXXXCTCEEGWVGPLCQVVHKFDDYNWEKHVDLSPRPIA--------VPMLLKTLGGIIVLLVAGMSFALGRQMSRTKWQYHQELRDASRFAGTMR*V*TRARARPVGD 2151
            A A     +L    + W+DPDTP E+ +T S  DG++Y L+MSDEF V GR+F DG DP WT+    DD   +SG G+  +YN+S  +T  G +NI      T+W   +P  +     +++Y S M+  WNKFCFTGGI+E++  LPG   IGGLWPA WLLGNLGRATY ASTN +WPWSY+ CD + Q AQE+SACN  +H+GLH  QGRGSTEIDI+E+  G   +       +++PY   TLQ APGI + RPT G L             +S    WYEG+ +G+ +S+N +FYG ++  T PEEPV R   QAY ADA++ +  L   HF + H ++LEW PG  GR++WY       D      I G+T+         G QIP EPSY+I+N A+SS+WGFP      C   CYDC +P C CA+ PGFC M+ S     +I+ VRVYQN +DS        +GC+  ++P++ FI  H YRYMR      D+ P+KK++VGGG C+ D  C                   RGS     C CE+G+VGP C  +   DD      +      +A        +P+LL  L  I+++  A M++ +  +    K+    ++   S F         R + RP GD
Sbjct:   32 AVAVACARSLRPAGAAWIDPDTPSEFHSTASFVDGSKYRLVMSDEFNVDGRTFTDGDDPAWTALDKHDDIMDNSGFGSLHYYNSSAVSTAGGYLNIAARIGKTTWLSQDPVNKTIHEESRNYVSGMLQGWNKFCFTGGIVEVEVVLPGNPHIGGLWPAVWLLGNLGRATYMASTNRVWPWSYNKCDREKQPAQELSACNVDSHYGLHKNQGRGSTEIDIIESMSGKVGEIPETDPPISNPYADMTLQSAPGITVRRPTEGHLPARVETTGEYGYPMSLPQNWYEGLIYGNETSMNPYFYGTYLAPTKPEEPVQRSKKQAYQADALAAMFQLFPQHFRKTHKFRLEWQPGRDGRIDWYGQVPSKDDAAPPEWIHGYTIHDEFVRNQTGAQIPAEPSYLIMNIALSSNWGFPYDIKPTCK-RCYDCDNPRCACALQPGFCDMMRSGNADMLIDSVRVYQNDDDSAHVGEPHTLGCDPPNYPTREFIAGHSYRYMRRWPGYDDRKPMKKIVVGGGSCEDDADCGTLHRGQCVPDAYRGLFAARGSKSRNTCVCEDGFVGPRCLTISYKDDAPGAYEIKQEQNSLATVAEVYLPMPLLLSFLC-IVIMFTASMAWQIYCRKMPIKYNKDGDIIPMSPFL-------KRPQFRPTGD 674          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S1YUS6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUS6_9STRA)

HSP 1 Score: 482 bits (1240), Expect = 7.690e-152
Identity = 264/619 (42.65%), Postives = 354/619 (57.19%), Query Frame = 1
Query:  382 VAAASLTILALGGVDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPL-MNLGKVNSPYVSTTLQLAPGIPLHRPTNG---------------ELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWYIDDVMVLGIDGHTVEKH---------------------GTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYM---IEHVRVYQNKNDS-----RMNVGCNTESHPSKLFIEAHKYRYMR-----LGDKDPLKKVMVGGGKCKGDDGC--HRGSXXXXXCT----------------CEEGWVGPLCQVVHKFDD----YNWEKHVDLSPRPIA------VPMLLKTLGGIIV 2004
            +  A L  ++L    +GWVD DTP +  T  SL DG+EYEL+MSDEFEV GR+F DG DP+WT+   SDD           FYN+S  TT  G M I++    T W  Y+P K++Y+ +TK ++S MV +WNKFCFTGGI+E+D  LPG+  IGGLWPA W+LGNLGRATYEASTN IWPWS+DTCD  LQ AQ ISACN  NHFGL+  QGRG+TEID+LE   G SD PL      ++ PY++ TLQ+APGIP +RP +G               +LL+ S  WY+ +    N+S+N  FYG ++ +T PEEPV R   +A+ ADAI  +  + + HF + + Y++EW PG GGRL+W+   V     +                            G+QIP+EPSY+ILNT +SS+W FP   P  C   CYDC DP C C+  PGFC M+ S  +   I+ +RVYQ+KND+     +  VGC+   +P++ +I+ H+Y Y+R       D  PL+K+ VGGG C+ D+ C  H        CT                C +G+ GP C  V   DD    Y+ +K + L   P A      + + +  LGGI V
Sbjct:   15 LGCALLAAISLNSAKAGWVDVDTPTDKLTATSLIDGSEYELVMSDEFEVEGRNFKDGSDPMWTALDKSDDXXXXXXXXXXXFYNSSTVTTEDGMMKISSKLGKTKWTHYDPIKKEYKKVTKYFKSGMVQSWNKFCFTGGIVEVDLVLPGDPFIGGLWPAVWMLGNLGRATYEASTNNIWPWSFDTCDRDLQHAQHISACNNQNHFGLNPKQGRGATEIDLLELMAGDSDGPLPATEPPISLPYLAMTLQVAPGIPDNRPQSGAQPRRNDTTSANGHTQLLAQS--WYDDLVTKGNTSINPFFYGTYLAETKPEEPVQRTKKEAFQADAIGSMHQVAQEHFLKPYTYRVEWQPGRGGRLDWFAKKVSSADTENSASSXXXXEDEWVHAFSIPDKSIGDLMGSQIPNEPSYLILNTGISSTWAFPYDVPEWCT-KCYDCDDPNCACSFNPGFCKMMKSGNVAMKIDSIRVYQSKNDTAHPGNKHTVGCDLPEYPTREYIKGHEYLYVREPPFSYTDTGPLEKIKVGGGSCQTDEDCGGHLTPTARGRCTLSSSSFWRGQPTNKCQCNDGFTGPHCLAVDHNDDTPGVYDMKKKMSLFDHPRAFMWNTDMVIFVGILGGIFV 630          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S2EFL5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFL5_TRICV)

HSP 1 Score: 466 bits (1198), Expect = 2.890e-145
Identity = 245/527 (46.49%), Postives = 322/527 (61.10%), Query Frame = 1
Query:  421 VDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGT-------SDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNG-------ELLSSSHT------WYEGMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWYID--------DVMVLG-------IDGHTVEKH------GTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSY--MIEHVRVYQNKNDS-------RMNVGCNTESHPSKLFIEAHKYRYMR-----LGDKDPLK-KVMVGGGKCKGDDGC 1833
            V  GW+DPDTPEE++TT+SL DG+EY L+MSDEFE  GR+F DGHDP WT+   SDD  ++SG G+  FYN+S  TT  G + I+TT E T W  Y+  K +++   K ++S MV +W KFCFTGGI+E+D  LPG+  IGGLWPA WLLGN+GRATYEASTN IWPWSYD CD  LQR Q ISAC++ NH+G++  QGRG+TEIDILE   G        S DP + L     PY   TLQ+APG+P +RP +G        L    HT      WYEG+    N++LN  FYG ++ +T PEEPV R  ++A+ ADA+  +  L   HF + H ++LEW PG GGRL+WY          D  ++G       +  +T++        G++IP EPSY+I N A+SS+WGFP   P  C+  CYDC +  C CA  PGFC M+      +I+ VRVYQ  N +          VGC+    P++ +I+ H YRYMR       D  PLK ++ VGGG+C+ D  C
Sbjct:   29 VRGGWIDPDTPEEFRTTKSLLDGSEYRLVMSDEFETPGRTFADGHDPTWTALDKSDDDYSASGGGSLHFYNSSSVTTKNGYLQISTTLEETKWNQYDDIKEEWKPQMKHFKSGMVQSWEKFCFTGGIVEVDIVLPGDPYIGGLWPAIWLLGNIGRATYEASTNNIWPWSYDECDRSLQRKQSISACDEANHYGMNPRQGRGATEIDILEGMMGDPEGQYLPSTDPPVAL-----PYADMTLQVAPGVPENRPMSGFQPMRNDSLTPDGHTELMAQTWYEGLEVEGNTTLNPFFYGTYLGETKPEEPVTRTKEEAFQADAVGAMHQLTPAHFKKNHKFRLEWRPGRGGRLDWYAQSHANSQGKDGYLMGDGKGEDWVKAYTLKDESLANLMGSKIPQEPSYLIFNIAISSTWGFPNSIPDWCE-KCYDCSNSTCACAFHPGFCNMMKGGVKMLIDSVRVYQKDNAAGDGTGGQNQTVGCDPLEFPTREYIKGHGYRYMRHPPFSYEDDGPLKYEIDVGGGECESDVDC 549          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A7S1B603_9STRA (Hypothetical protein n=8 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B603_9STRA)

HSP 1 Score: 460 bits (1183), Expect = 2.580e-144
Identity = 248/568 (43.66%), Postives = 337/568 (59.33%), Query Frame = 1
Query:  427 SGWVDPDTPEEYKTTRSLYDGAE--YELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSHTWYEGMTFGDN--SSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIP----GIGGRLNWYIDDVMVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMR--LGDKDPLKKVMVGGGKCKGDDGC----HRG-SXXXXXCTCEEGWVGPLCQVVHKFDDYNWEKHV------DLSPRPIAVPMLLKTLGGIIVLLVAGMSFALGRQMSRTKWQY 2067
            +GW+DPDT  +++TT  L  G +  YEL+ SDEFE  GR F DG DP WT+   +D   T+S L   Q+Y A    T+ G ++I T  +   +R +N   +KY +  K Y+S MV  WNKFC TGGI+EI AKLPG     GLWPA WLLGNL RATY  S+N +WP+SYDTCD   + +QEISACNKINH+ LH  QGRG+ EIDI+E   GT +   +    +  PY ST+LQ+APG   +RP  G    +  TWY G+ +G N  + LN  FYG+++        V+  A   Y +DAIS  T L +THF   H Y++EW P    G GG + W+ID   V GI+ +T+    T IP+EP YVILNTA+SS+WGFP+PCP GC C C++C +  C C  PPGFC   P+S+ I++VR+YQ  ND++  +GC+T +HPS +FIEAHK RY+    GDK+PLK V  GG  C  +  C    +RG       C C  G+ GP C     ++D   ++ +      + +   I +P  LK + G  +L++   + A   Q    K+ Y
Sbjct:   60 AGWIDPDTASKFRTTAPLTKGDDRTYELVFSDEFETDGRQFGDGFDPRWTALEKND--YTNSAL---QYYKAQNVNTSGGLLHIYTEKKVNFYRAFNETTKKYYSDKKDYQSGMVQGWNKFCITGGIVEISAKLPGHVFSAGLWPAMWLLGNLARATYVGSSNFVWPFSYDTCDESNRISQEISACNKINHYDLHPLQGRGAPEIDIIEVMAGTVEK--LPHTMITKPYASTSLQVAPGKKYNRPRLGTRPVNG-TWYNGLQYGKNLTTDLNPFFYGVNL--------VHEPAKYTYQSDAISANTQLSQTHFERQHVYRVEWEPSDVNGRGGYVRWFIDGHFVYGIEDYTLNLTNTMIPNEPMYVILNTAMSSTWGFPLPCPRGCKCDCFECGNSKCECGFPPGFCKNFPNSFDIDYVRIYQAVNDTKHKLGCSTSTHPSDVFIEAHKKRYIDPFSGDKEPLKVVETGGMACTDNKDCGGELNRGICDTENSCQCFTGYTGPSCLANVGYNDIPNKRKILPVEFLEENAVTIFIPTPLKCVFGFFILIIIITTCAKVAQRRNEKYLY 611          
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Match: A0A8J2SVF6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVF6_9STRA)

HSP 1 Score: 456 bits (1174), Expect = 3.530e-143
Identity = 243/557 (43.63%), Postives = 328/557 (58.89%), Query Frame = 1
Query:  403 ILALGGVDSGWVDPDTPEEYKTTRSLY--DGAEYELIMSDEFEVHGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITTTDESTSWRGYNPYKR--KYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPGEHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISACNKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQLAPGIPLHRPTNGELLSSSHTWYE-GMTFGDNSSLNYHFYGMHVDKTTPEEPVYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGR-LNWYIDDVMVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYDCK----DPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSKLFIEAHKYRYMRL--GDKDPLKKVMVGGGKCKGDDGCHRGSXXXXX-CTCEEGWVGPLCQVVHKFDDYNWEKHVDLSPRPIAVPMLLKTLGGIIVLLVAGMSFAL 2034
            +L+L G   GWVDPDTP+++  T+SL   +  E+ELI SDEFEV GR+FDDGHDP WT+   +D         A  FY + + TT+ G++NI+T  E TS+      K   + +  TK Y S +V  W KFCFTGGI+E+ A+LPG   +GGLWPA WLLG L RATY  ST+ +WPWS+D CD  LQ  QEI+AC    HFGLH  +GRG+ EID+LEA PG+     +  G +  PY S + Q+APG P  RP  G+       WYE G+ +G N+++N  FYG  +   T  +         Y+ADA+S    +   HF  YH Y+LEW    G + L+W++D   V  +    +E  G ++PDEP +++LNTAVSS+WGFP PCP GC C C+DC+    DPAC C +P G C MLP+ Y I+ VRV+Q  ++    VGC+T++ P+  FIE H++RY      +  PLK  + GGG C  D  C R S      C C+  W GP C+    FDD+ WE    LS     VP  L   G ++V ++A + FAL
Sbjct:   56 LLSLRGCSGGWVDPDTPKQHLKTKSLRRPEAGEFELIYSDEFEVAGRTFDDGHDPRWTAVDKNDYTNM-----ALHFYKSKHVTTSGGALNISTRYEPTSFMSAEDKKGFVEMQKRTKPYASGLVQGWGKFCFTGGIMEVRARLPGAGHVGGLWPAMWLLGALARATYVGSTDWMWPWSFDKCDRSLQPKQEINACEPNPHFGLHSKEGRGAPEIDLLEAMPGSGT---LGYG-LKKPYFSASYQVAPGKPHDRPIEGKKPRKGQ-WYEKGLEYGKNATVNAFFYGEELSHKTKRD--------TYVADAVSANRPITDDHFQNYHTYRLEWSTTEGHKHLSWFLDGEKVFHMPPEALELTGAKMPDEPMHILLNTAVSSTWGFPAPCPPGCACECFDCQGSLPDPACSCGMPEGLCAMLPAFYEIDSVRVWQQADEPSHKVGCSTDTRPTAKFIEGHRHRYFDPYNDETQPLKPQVHGGGTCTKDKDCGRASACKDGQCKCQGEWTGPHCRAAKAFDDHVWEHPPTLSFYGPVVPASLLRFGALLVGVLASV-FAL 593          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH94_9PHAE0.000e+079.15GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YN37_9STRA4.630e-22453.61Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A7S3M1V3_9STRA1.750e-16954.78Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9CTT0_9STRA8.580e-16452.17GH16 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2W5Y4_9STRA6.540e-15545.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1BHS0_9STRA2.890e-15240.34Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1YUS6_9STRA7.690e-15242.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2EFL5_TRICV2.890e-14546.49Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1B603_9STRA2.580e-14443.66Hypothetical protein n=8 Tax=Corethron hystrix Tax... [more]
A0A8J2SVF6_9STRA3.530e-14343.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:261193..266843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC98
PFAMsSKN1
Model size3780
Max annot lvl2759|Eukaryota
KEGG koko:K21850
Hectar predicted targeting categorysignal anchor
Exons3
Evalue0.0
EggNOG OGsCOG2273@1|root,2QVQE@2759|Eukaryota
Ec32 ortholog descriptionBeta-1,6-glucan active enzyme, family GH16
Ec32 orthologEc-14_005560.1
DescriptionBeta-glucan synthesis-associated protein (SKN1)
Cds size1887
COG categoryG
CAZyGH16
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791660.9970107-UTR-P-littoralis_Contig81:261192..2614201680791660.9970107-UTR-P-littoralis_Contig81:261192..261420Pylaiella littoralis U1_48UTRP-littoralis_Contig81 261193..261420 +
1680791661.0441198-UTR-P-littoralis_Contig81:265178..2668431680791661.0441198-UTR-P-littoralis_Contig81:265178..266843Pylaiella littoralis U1_48UTRP-littoralis_Contig81 265179..266843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791661.0094435-CDS-P-littoralis_Contig81:261420..2627461680791661.0094435-CDS-P-littoralis_Contig81:261420..262746Pylaiella littoralis U1_48CDSP-littoralis_Contig81 261421..262746 +
1680791661.022467-CDS-P-littoralis_Contig81:263352..2634541680791661.022467-CDS-P-littoralis_Contig81:263352..263454Pylaiella littoralis U1_48CDSP-littoralis_Contig81 263353..263454 +
1680791661.033591-CDS-P-littoralis_Contig81:264719..2651781680791661.033591-CDS-P-littoralis_Contig81:264719..265178Pylaiella littoralis U1_48CDSP-littoralis_Contig81 264720..265178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.72.1prot_P-littoralis_Contig81.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 261421..265178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.72.1

>prot_P-littoralis_Contig81.72.1 ID=prot_P-littoralis_Contig81.72.1|Name=mRNA_P-littoralis_Contig81.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=629bp
MAAEGSDRSALLAPRAARRRSTATDRGERVAGVGRGCHQQRRRRPSAAKR
VVAAASLTILALGGVDSGWVDPDTPEEYKTTRSLYDGAEYELIMSDEFEV
HGRSFDDGHDPVWTSTTHSDDAQTSSGLGAQQFYNASYGTTTRGSMNITT
TDESTSWRGYNPYKRKYETLTKSYRSSMVNTWNKFCFTGGIIEIDAKLPG
EHDIGGLWPAFWLLGNLGRATYEASTNLIWPWSYDTCDHKLQRAQEISAC
NKINHFGLHGYQGRGSTEIDILEAQPGTSDDPLMNLGKVNSPYVSTTLQL
APGIPLHRPTNGELLSSSHTWYEGMTFGDNSSLNYHFYGMHVDKTTPEEP
VYRGADQAYLADAISGLTGLDRTHFHEYHNYKLEWIPGIGGRLNWYIDDV
MVLGIDGHTVEKHGTQIPDEPSYVILNTAVSSSWGFPMPCPVGCDCTCYD
CKDPACHCAIPPGFCGMLPSSYMIEHVRVYQNKNDSRMNVGCNTESHPSK
LFIEAHKYRYMRLGDKDPLKKVMVGGGKCKGDDGCHRGSCHRGKCTCEEG
WVGPLCQVVHKFDDYNWEKHVDLSPRPIAVPMLLKTLGGIIVLLVAGMSF
ALGRQMSRTKWQYHQELRDASRFAGTMR*
back to top

mRNA from alignment at P-littoralis_Contig81:261193..266843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.72.1 ID=mRNA_P-littoralis_Contig81.72.1|Name=mRNA_P-littoralis_Contig81.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5651bp|location=Sequence derived from alignment at P-littoralis_Contig81:261193..266843+ (Pylaiella littoralis U1_48)
GCTGCCTGCTGCCTGCTGCACTACATCGCGCGTTCTGTGTTCCCTCAAGC CGTAACCATTGCTGCATTGCTACTCGGAGCTGTCCGTCCTGTGCCATTGA AGCACTGCAGTGGAAGTGGCACACATCTTCCCCGAGCTGTTTCACCTGCT GGTGTGAGATTTTCCTACTGCTGCGTCCCGCGCAGCTCGCGTGCGTATAT CATCCATACCGTGTACTTGTAGGCCAAGATGGCGGCAGAGGGCAGCGACC GATCAGCGTTGCTAGCTCCGAGGGCAGCGAGAAGGCGCAGCACTGCTACT GACAGAGGCGAAAGGGTAGCGGGCGTGGGCCGTGGCTGCCACCAGCAACG ACGGAGGCGACCTTCCGCCGCAAAGCGTGTCGTTGCTGCTGCTTCCTTGA CTATATTGGCGTTGGGCGGCGTCGACTCCGGCTGGGTTGACCCTGATACC CCGGAGGAGTACAAGACCACCCGCTCGTTGTACGATGGCGCGGAGTACGA ACTGATAATGTCCGACGAGTTCGAGGTCCACGGACGATCCTTTGACGACG GCCACGATCCCGTGTGGACATCAACAACACACTCAGACGACGCCCAAACG TCTAGCGGGCTCGGGGCCCAACAGTTCTACAATGCGTCCTACGGTACTAC AACCAGGGGGAGCATGAACATTACCACCACCGATGAATCCACCTCCTGGC GAGGGTACAATCCCTACAAACGCAAGTACGAGACGCTCACTAAGAGCTAC CGCAGCTCCATGGTCAACACCTGGAATAAGTTCTGCTTCACCGGCGGCAT CATCGAGATTGATGCCAAGCTCCCGGGCGAGCACGACATCGGCGGGCTGT GGCCGGCCTTCTGGTTGCTGGGAAACCTCGGCCGTGCGACGTACGAGGCC TCCACCAACCTTATCTGGCCATGGAGCTACGACACCTGCGATCACAAGCT CCAGCGAGCGCAGGAGATCAGCGCATGCAATAAGATCAACCACTTCGGGT TGCACGGGTACCAGGGCCGCGGATCTACAGAGATTGATATTCTTGAGGCC CAGCCGGGGACGTCCGACGACCCCCTCATGAACCTCGGCAAGGTGAACAG CCCGTACGTGTCGACGACGCTCCAGCTCGCCCCGGGTATCCCCTTGCACC GCCCCACCAACGGGGAGCTGCTTTCTTCATCGCACACCTGGTACGAGGGC ATGACGTTCGGAGACAACTCCTCGCTCAACTACCACTTCTACGGCATGCA CGTGGACAAGACGACCCCGGAGGAGCCGGTGTACAGAGGGGCCGACCAGG CGTACCTCGCCGATGCGATCTCGGGGCTAACGGGGCTGGACCGCACCCAT TTCCACGAATACCACAACTATAAGCTCGAGTGGATTCCTGGGATAGGTGG ACGTTTGAATTGGTACATCGACGACGTTATGGTGCTGGGCATCGATGGCC ACACCGTCGAAAAGCACGGCACGCAGATCCCGGACGAGCCTTCCTACGTC ATCCTCAACACAGCAGTTTCCAGCTCTTGGGGTTTCCCGATGCCGTGCCC AGTGGTGAGTTGATTGGAAAAGGGTCCGTGGTGGGGAATCGCCCCGGGGG GGCGGGGGGGCAGTTGGCTGTGGTATCCCAGCTGCTGAGTCTGGAAAATG TTGAGTTAAAGATTTTGGTGTGTTCGTGTGGATGATATCAGATGGTGTAC AGGGGAGATTCGCTTTGTGGCGACGCTCCAAAGTACCTACGGCACTGCTG TTCACAGCCGTTACCGCTGAACAAATGAGTGCGAGAACCCTGGGTATTTT TTGCATGTGAAGCGTATATTACTCGAAAGAGATAGTCCTGATAATGCACA GCAGTGCTGTTGCTGCTGCAGTTGCTGCTGCTGCATTGTTCCTTTTTACC AACTGCCTGGTGTGACCTGTAGGTTTCCGCGACGAACACGGATTGGTTTT GTCATTTGGTTGGCGTTGAGCCTTTGCGTCCAGGTTTTGGTTCCCTCGAG TTTGTTTTGCACGAACCACAGCAGTTGCTGGTATTTCTTCTCCCTCCCAC CCCGACCCCCTCCATCTCCCTGCTCGTTGTCATGCTCACATCTTAAATTT CGTGCGCTTTTCTTTCTTTCCTGTACAATAAAATTGGCACGGCCGAAAAC GAAAACCTAGGGATGCGACTGCACTTGCTACGACTGCAAGGATCCGGCGT GCCACTGCGCCATCCCGCCCGGTTTTTGCGGCATGCTCCCGTCCTCCTAC ATGATCGAACACGTGAGTGAAATTCACCCACTAGTCTCGTTGGTTGGCGA TCATGGTGCCCTTCCAATGAAATTGTGCTGTTGTTGATGGTTGTCAGATA TCATAGACTAGGCATGCATATTTTGTGTGGTGGGGGGGGCGCTTGGACGT ACGGTAGTGTAGATTTTTTCGTGATTCCCAATTTCTCGGCCACCAAGCAC TCTCTGAATGATGTGGTTATACTTCCGAAAATACCCATCAGGGAATACTG CTGTACGGTAAGAGTTTTCGAGACTCTAGTTTCTTCGACCCTCCGAGCTT ACCATTTTGACAACACATGTTTACTTTCGTCTGAGAGAGAGCCGACCCTA AGCTTTTGAAATGAGTGCGGCAAACGATGACTCTCGCAAGTATTGCGAGT CCACCCCCCTGATGTGTTCAGAACAAGTGATGACATATGTTTTCTCTGAA ACAGCCGGCGTTTTGGTGTTTTGTGCGTTCGAATTATCAAACGTTCGTCG CTTACTGGAGTGCGCGCTCGCTGTGGGCTTCATGGTTTATGGTCTGTACA TGGTTACCACAAGTGGCATATAGTTTTGGCGGTGCTGTCGCTTTATTTGA CTGCGCTTGCTGCCCTCGTTTCCCAGCAAGATGGTCCCCTCCCTCGATCT GCCGTTCTCACCGGCGTACCTCGTGTTCTTCGGTTTCCGTGGCTTTTTGC TTCTTTATTTGAAATCCCCAGCGGATGCAGAACGACAAAGCAAAAAACCA CCCGAAGTGATTTGTGTGTAGTCAATCCAGATATACATGCGGTTTCACAG TGTATTTTTCACTCCTTTTTTTGGGGCGGAGTTTTACTTGCCGAACAAGA ACGGCCTGGCGGCATTTCTTATCAAGTGCCTGCCAGCGTGTACCGCAGCT TGCGTGAAGTCTCCCCTTTCCCCAAAACAGCTGGCATGAAGTGTAAGAAA TCAGGAGGACTGAAAACAGTTTTTTGGTAGCCTCGTCTGACGTCACAGTA GTCCTCCCACGCCATACGAATATTGCGAGCTTGTTTCGTAGACGTAAAAT TTTTTACCACCAATTCCCATTGAAGCACCAGGCCACACCATTTCAGATGA CGCCCCCCCCCACCCCCTCACGTTTTATGTCTTCAACGTGTGTAGTCACC GAATCAGGCCTTTTTCTACTGATTGACACACGCAAGGGTCGCGTGGTTCC GTTTTCTTAGACCTTGCCGTTTGCCGTGCGCGAAATGTGTTTTGTTTTTT CGGTGTGCCTCGTCTCGTCTGTTTTAGGTACGCGTCTACCAAAACAAGAA CGACAGCCGCATGAACGTGGGGTGCAACACTGAGTCCCACCCTTCCAAGC TGTTCATCGAGGCACATAAGTACCGCTACATGAGACTAGGAGACAAGGAT CCCCTCAAGAAGGTCATGGTGGGCGGGGGCAAGTGCAAGGGCGACGATGG ATGCCACAGGGGGTCCTGCCACCGGGGCAAGTGCACGTGCGAGGAGGGGT GGGTGGGGCCTCTGTGCCAGGTTGTCCACAAGTTCGACGATTACAACTGG GAGAAACACGTGGACCTTTCCCCGAGGCCCATAGCCGTGCCGATGTTGTT GAAGACCCTGGGAGGAATCATCGTGCTGCTCGTGGCGGGGATGTCGTTTG CGCTCGGACGGCAGATGAGCAGGACGAAATGGCAGTACCATCAAGAGTTA CGGGATGCTTCGCGTTTCGCCGGTACGATGAGATAGGTTTAGACGAGAGC GCGCGCGCGCCCAGTTGGTGATTTCTTGTTTTTCACCAGGCATGAGATAG GTTTCTTTCGTGCCCCCCCAAGGCCAGTTGTCATATGTATTATTGTTTTA CGTAACGGGGGTAGCAAAATTTTTTTTTCGTTTTTCGTGGGGTGTTTCTG TTTGTTCACGTTGTTCGTGTTTTTCGCGCCCCCTCCCCCCCGCGTTCGTT ATTTTTTTCATACTTTAGCCACCCTTTTTCAACGTTGAGTGGTATCGTAG CGCTGTGGCTGGGTGGATCTGTGTTTGTTCGAAGTAGATTTTCGTGGTTT TGATGCGCGGTACCAAGCGGTTGGCACCATCATTTCTCCGTGCCACTCTA AGTCGAAGTTACCAAAAAAGCGGCGTGATTTTGAGTGTGCAACACCGAAA GAGTAAGACGTGTCAGCGCTTTTTCGCCCAGCATGTCAGGGAGGGTATTG CCATAATCGACGTCCTCAGAAATACGTGTAGGCGGTGTGGCGTGAGAGCG TGGGGTAATAGATTTGCTTTTAGAGGCAGGATGCAAGAGGAGGATAGGAG GAATAACGTCAGTGGGGGCACGAGCATCGAATAAAATTAGAATCTCGGGT AGGACGTGTTTTTTTCGCTGTGTTCGAGGAGCTCATTTCGAAGGCTACAG TATCTTGCTCTGCTGTTGTGCAGATCAGGAGGCGTTTTACTGTCATGAAA CCAACGCCAGGAGGCCGAATCAGTCGGCCGAAATCTAGGCACCCCCACAG CTACTGCTGTGCCGAGCATTCGAATTTGCCGAGATAAATGACACGTCGGT CGGCAACACTAGTGTTTCCATTCCATATGTTTCTGGTTCAAGTTCTCAGA TGTTTATTCTGACTGTAAGCAGGCAGTTCTGCGCGTACAGTTGGAAGTGA GGTAACGTTGGCACAAAACATCGTCGAAACTACGTGTGGCCGGCAGTCAT TCACCGGGTTATTTATAGCGCTTTTCTGGCGTAGAAGATAGATTCATTTG TGTGCGGATGCAAAACATCAACCAAAATGCTCGACGTCGTTTCGCCGCCG CACGTAGGTCCCCCGTCTGACTGTTCCCTAGATTACGTTCGTCTCAGCAG TAAAAAGGATTACAGGCTTTCGAGGCCGCCTTGACGGCTTAGTCTTACGT CTTGTGTACTCTTTCGGGAGCGTGTAGAACCATGCCTTGTTTTTTTTTTA TGCGCTCAAATTAGACTTTGGTGCGCCAACAATACCGAAACAAGGACACT GCTGCTGTTTCCAGCTCATACAGACCCCCCATCACGCTGACAATGCGGGC CTTGGTAACTTTTATGAAGTCAAGGCTGTTTTATCCCTCTCGCTTTTTCT TGCGAACGCTTGTACTTTTTTTGTTTCGTTTCTTGGTTTTGCATCCGAAA TATGGGTTTTATTTTCTCTTGTTTCTCCGATCGCAATCAAGATTTTTTTT TCGGTCTGTACTAAGCACCGGTCGCCCCGTTGGTCTAGTGGTTCCCACGT CAACCGATTAGCAGTAAGGATGCAGGTTCGGTTCTCTCTGAGAGTGTTTT CTTGCAGTTTTACAGTTGGAAGCGCTTCACTCGTGAGTAAACAAAGGGAA GGGATCGCTGAACCCGACTCGCATTAAAACCAAAGGCAAGTACCGCAGGA G
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:261193..266843+

>mRNA_P-littoralis_Contig81.72.1 ID=mRNA_P-littoralis_Contig81.72.1|Name=mRNA_P-littoralis_Contig81.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1887bp|location=Sequence derived from alignment at P-littoralis_Contig81:261193..266843+ (Pylaiella littoralis U1_48)
ATGGCGGCAGAGGGCAGCGACCGATCAGCGTTGCTAGCTCCGAGGGCAGC
GAGAAGGCGCAGCACTGCTACTGACAGAGGCGAAAGGGTAGCGGGCGTGG
GCCGTGGCTGCCACCAGCAACGACGGAGGCGACCTTCCGCCGCAAAGCGT
GTCGTTGCTGCTGCTTCCTTGACTATATTGGCGTTGGGCGGCGTCGACTC
CGGCTGGGTTGACCCTGATACCCCGGAGGAGTACAAGACCACCCGCTCGT
TGTACGATGGCGCGGAGTACGAACTGATAATGTCCGACGAGTTCGAGGTC
CACGGACGATCCTTTGACGACGGCCACGATCCCGTGTGGACATCAACAAC
ACACTCAGACGACGCCCAAACGTCTAGCGGGCTCGGGGCCCAACAGTTCT
ACAATGCGTCCTACGGTACTACAACCAGGGGGAGCATGAACATTACCACC
ACCGATGAATCCACCTCCTGGCGAGGGTACAATCCCTACAAACGCAAGTA
CGAGACGCTCACTAAGAGCTACCGCAGCTCCATGGTCAACACCTGGAATA
AGTTCTGCTTCACCGGCGGCATCATCGAGATTGATGCCAAGCTCCCGGGC
GAGCACGACATCGGCGGGCTGTGGCCGGCCTTCTGGTTGCTGGGAAACCT
CGGCCGTGCGACGTACGAGGCCTCCACCAACCTTATCTGGCCATGGAGCT
ACGACACCTGCGATCACAAGCTCCAGCGAGCGCAGGAGATCAGCGCATGC
AATAAGATCAACCACTTCGGGTTGCACGGGTACCAGGGCCGCGGATCTAC
AGAGATTGATATTCTTGAGGCCCAGCCGGGGACGTCCGACGACCCCCTCA
TGAACCTCGGCAAGGTGAACAGCCCGTACGTGTCGACGACGCTCCAGCTC
GCCCCGGGTATCCCCTTGCACCGCCCCACCAACGGGGAGCTGCTTTCTTC
ATCGCACACCTGGTACGAGGGCATGACGTTCGGAGACAACTCCTCGCTCA
ACTACCACTTCTACGGCATGCACGTGGACAAGACGACCCCGGAGGAGCCG
GTGTACAGAGGGGCCGACCAGGCGTACCTCGCCGATGCGATCTCGGGGCT
AACGGGGCTGGACCGCACCCATTTCCACGAATACCACAACTATAAGCTCG
AGTGGATTCCTGGGATAGGTGGACGTTTGAATTGGTACATCGACGACGTT
ATGGTGCTGGGCATCGATGGCCACACCGTCGAAAAGCACGGCACGCAGAT
CCCGGACGAGCCTTCCTACGTCATCCTCAACACAGCAGTTTCCAGCTCTT
GGGGTTTCCCGATGCCGTGCCCAGTGGGATGCGACTGCACTTGCTACGAC
TGCAAGGATCCGGCGTGCCACTGCGCCATCCCGCCCGGTTTTTGCGGCAT
GCTCCCGTCCTCCTACATGATCGAACACGTACGCGTCTACCAAAACAAGA
ACGACAGCCGCATGAACGTGGGGTGCAACACTGAGTCCCACCCTTCCAAG
CTGTTCATCGAGGCACATAAGTACCGCTACATGAGACTAGGAGACAAGGA
TCCCCTCAAGAAGGTCATGGTGGGCGGGGGCAAGTGCAAGGGCGACGATG
GATGCCACAGGGGGTCCTGCCACCGGGGCAAGTGCACGTGCGAGGAGGGG
TGGGTGGGGCCTCTGTGCCAGGTTGTCCACAAGTTCGACGATTACAACTG
GGAGAAACACGTGGACCTTTCCCCGAGGCCCATAGCCGTGCCGATGTTGT
TGAAGACCCTGGGAGGAATCATCGTGCTGCTCGTGGCGGGGATGTCGTTT
GCGCTCGGACGGCAGATGAGCAGGACGAAATGGCAGTACCATCAAGAGTT
ACGGGATGCTTCGCGTTTCGCCGGTACGATGAGATAG
back to top