mRNA_P-littoralis_Contig81.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.47.1
Unique NamemRNA_P-littoralis_Contig81.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: D8LCB4_ECTSI (PIG-P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB4_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 9.950e-64
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 1 
Query:    1 MDPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGKC 294
            MDPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSA+FVTWSVAVLVYIA+NFMSTAPLDSFDTITG C
Sbjct:    1 MDPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAIFVTWSVAVLVYIAVNFMSTAPLDSFDTITGAC 98
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A024TZW3_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZW3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.600e-28
Identity = 48/79 (60.76%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTI 282
            +E+YGFAGWIAS+V +  YL+WAYVP+S L + GITYYPS+YWA+A+P+ + +T    ++VYIAIN++STAPLDS++TI
Sbjct:   57 MEIYGFAGWIASIVVFVCYLLWAYVPDSILASYGITYYPSRYWALAVPAMLAMTLMALLVVYIAINWVSTAPLDSYNTI 135
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A024U0F3_9STRA (PIG-P domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U0F3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.580e-28
Identity = 48/82 (58.54%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGK 291
            +E+YGFAGWIAS+V +  YL+WAYVP+S L + GITYYPS+YWA+A+P+ + +T    ++VYIAIN++STAPLDS++TI  +
Sbjct:   57 MEIYGFAGWIASIVVFVCYLLWAYVPDSILASYGITYYPSRYWALAVPAMLAMTLMALLVVYIAINWVSTAPLDSYNTIRDQ 138
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A067CW67_SAPPC (PIG-P domain-containing protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW67_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 7.930e-28
Identity = 45/81 (55.56%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITG 288
            +E+YGFAGWIAS+V +A YL+WAY+P+S L   GI+YYPS+YWA+A+P+ + ++  + +++Y+AIN +STAPLDS++TI G
Sbjct:   45 MEIYGFAGWIASIVVFACYLLWAYLPDSVLNQYGISYYPSRYWAVALPAMLCMSIFMVLIIYVAINLLSTAPLDSYNTIRG 125
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: W4FT93_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FT93_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.840e-27
Identity = 47/81 (58.02%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITG 288
            +E+YGFAGWIAS+  +  YL+WAYVP++ L + GITYYPS+YWA+A+P+ + +T    V+ YIAIN++STAPLDS++TI G
Sbjct:   59 MEIYGFAGWIASIAIFVCYLLWAYVPDAILASYGITYYPSRYWALAVPAMLVMTLMALVVFYIAINWISTAPLDSYNTIRG 139
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A1Y1I0L7_KLENI (Phosphatidylinositol N-acetylglucosaminyltransferase subunit P n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0L7_KLENI)

HSP 1 Score: 105 bits (261), Expect = 8.540e-27
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   13 PRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGK 291
            P RRK  G    EVYGF G IAS+VAYAL+++WAY+PE  L A G+TYYPSKYWAIA+P+   VT  +AVLVY A+  MST PLDS  TI  +
Sbjct:   17 PIRRK--GAVPAEVYGFVGSIASIVAYALFILWAYIPEQYLHAAGVTYYPSKYWAIALPAYAIVTVFLAVLVYTALCMMSTKPLDSPYTIKDE 107
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A835YPJ9_9STRA (PIG-P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.930e-27
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:   43 IVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGK 291
            +  VYGFAGW+AS + Y  YL+WA++PE  L ALGITYYPSKYWA+A+P  V V  +  V+ Y ++N M T+PLDS DT+T  
Sbjct:    6 VTGVYGFAGWLASFILYGFYLLWAFIPEEQLHALGITYYPSKYWALALPCYVLVALTSIVVGYCSLNMMDTSPLDSLDTLTDN 88
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A485KCT7_9STRA (Aste57867_4527 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCT7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.190e-26
Identity = 45/82 (54.88%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGK 291
            +E+YGFAGWIAS+V +  YL+WAYVP+  L+  G+TYYPS+YWA+A+P+ + +T  + V+ YIAIN++STAP DS++TI  +
Sbjct:   54 MEIYGFAGWIASIVIFVCYLLWAYVPDEILEDYGLTYYPSRYWALAVPAMLVMTVFMLVVFYIAINWISTAPFDSYNTIRDQ 135
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: A0A6G0W9C3_9STRA (PIG-P domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9C3_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.640e-26
Identity = 45/82 (54.88%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGK 291
            +E+YGFAGWIAS+V +  YL+WAYVP+  L+  G+TYYPS+YWA+A+P+ + +T  + ++ YIAIN++STAPLDS +TI  +
Sbjct:   34 MEIYGFAGWIASIVIFVCYLLWAYVPDELLEDYGVTYYPSRYWALAVPAMLVMTVFMLLVFYIAINWLSTAPLDSNNTIRDQ 115
[Close]
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Match: K3WSG6_GLOUD (PIG-P domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSG6_GLOUD)

HSP 1 Score: 101 bits (251), Expect = 4.060e-25
Identity = 43/79 (54.43%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:   46 VEVYGFAGWIASLVAYALYLVWAYVPESTLQALGITYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTI 282
            +E +GFAGW+AS + Y L+L+WAY+PE TL+A G+TYYPSK+WA+A+PS + VT+  +++VY A N +ST PLD++ T+
Sbjct:   30 MEFFGFAGWLASTLLYVLFLMWAYLPEETLEAYGLTYYPSKHWALAMPSMLVVTYLFSIVVYKACNLLSTPPLDAYATV 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB4_ECTSI9.950e-6496.94PIG-P domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A024TZW3_9STRA1.600e-2860.76PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A024U0F3_9STRA2.580e-2858.54PIG-P domain-containing protein n=4 Tax=Aphanomyce... [more]
A0A067CW67_SAPPC7.930e-2855.56PIG-P domain-containing protein n=5 Tax=Saprolegni... [more]
W4FT93_9STRA1.840e-2758.02PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A1Y1I0L7_KLENI8.540e-2760.22Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A835YPJ9_9STRA8.930e-2755.42PIG-P n=1 Tax=Tribonema minus TaxID=303371 RepID=A... [more]
A0A485KCT7_9STRA2.190e-2654.88Aste57867_4527 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0W9C3_9STRA3.640e-2654.88PIG-P domain-containing protein n=1 Tax=Aphanomyce... [more]
K3WSG6_GLOUD4.060e-2554.43PIG-P domain-containing protein n=1 Tax=Globispora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:178388..179242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCB4
Preferred nameGPI19
PFAMsPIG-P
Model size303
Max annot lvl2759|Eukaryota
KEGG koko:K03861,ko:K10847,ko:K20178
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko01524,ko03420,ko04138,map00563,map01100,map01524,map03420,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0000506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
Exons3
Evalue1.63e-64
EggNOG OGsKOG2257@1|root,KOG2257@2759|Eukaryota
Ec32 ortholog descriptionPIG-P
Ec32 orthologEc-14_005380.1
Descriptionphosphatidylinositol N-acetylglucosaminyltransferase activity
Cds size303
COG categoryS
BRITEko00000,ko00001,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791659.6122935-CDS-P-littoralis_Contig81:178387..1785231680791659.6122935-CDS-P-littoralis_Contig81:178387..178523Pylaiella littoralis U1_48CDSP-littoralis_Contig81 178388..178523 -
1680791659.625732-CDS-P-littoralis_Contig81:178797..1788701680791659.625732-CDS-P-littoralis_Contig81:178797..178870Pylaiella littoralis U1_48CDSP-littoralis_Contig81 178798..178870 -
1680791659.6378052-CDS-P-littoralis_Contig81:179148..1792421680791659.6378052-CDS-P-littoralis_Contig81:179148..179242Pylaiella littoralis U1_48CDSP-littoralis_Contig81 179149..179242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.47.1prot_P-littoralis_Contig81.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 178388..179242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.47.1

>prot_P-littoralis_Contig81.47.1 ID=prot_P-littoralis_Contig81.47.1|Name=mRNA_P-littoralis_Contig81.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MDPLPRRRKEGGGEIVEVYGFAGWIASLVAYALYLVWAYVPESTLQALGI
TYYPSKYWAIAIPSAVFVTWSVAVLVYIAINFMSTAPLDSFDTITGKCFL
*
back to top

mRNA from alignment at P-littoralis_Contig81:178388..179242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.47.1 ID=mRNA_P-littoralis_Contig81.47.1|Name=mRNA_P-littoralis_Contig81.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=855bp|location=Sequence derived from alignment at P-littoralis_Contig81:178388..179242- (Pylaiella littoralis U1_48)
ATGGATCCTCTCCCAAGGCGACGAAAGGAGGGCGGGGGCGAGATCGTCGA
AGTCTACGGGTTTGCGGGTTGGATTGCCAGTCTCGTGGCGTACGGTGAGA
AAATCAGCGCGTGACATAACAAGCGTTTCTGAGCAACCTACTGCTGTACT
GCTGTACCAGCCATCCTCTATCAGCAGCTTCTGGTCCTTGGCCCACACTG
GAGGCCATGGCACGGTAGTGCAGGCTGCGAGGATAGTGGTGGGCGAAAAA
GTGTACCATACCTTCCTACGGATCAATTCGTCAGGTCCAAAGTCCACAAG
ACTCTTGGTTTCAATCTATTTAATCTAATGTTCGTTTCGTTTTCTGTTGG
TTTGGGTGTTTGTTGACAACAGCGCTGTACCTGGTGTGGGCGTATGTCCC
GGAGAGCACGCTTCAAGCCCTCGGTATCACCTACTACCCCAGCAAGTAAG
ACACGCGCACAGAGAGTGAAATTGGTACCATACCGTCTGCTACCTCTCGT
AGGATCAAGGGTAGCAGTTCCTGAATTCGCTGTACACACACGCAATGTGC
CCAACTGCTGTTGGTTTTTGGTTGCTCGATTCCTTGGTCACATACCACAC
ACCCTTCTGTTGATCGTGCTGGCTCCTCAGTTGTACCGGTAGCCTGCTTC
GTCTTCTGACACCACAATGGTGAAACCTAGGCAACTTCAACTGTCTGTCC
CCCTCCTACACGACTGAAGGTACTGGGCGATTGCCATCCCGAGCGCTGTA
TTTGTGACGTGGTCGGTGGCTGTCTTGGTCTACATCGCAATAAACTTCAT
GAGCACCGCCCCGCTCGATTCTTTCGACACCATCACAGGTAAATGTTTTT
TGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:178388..179242-

>mRNA_P-littoralis_Contig81.47.1 ID=mRNA_P-littoralis_Contig81.47.1|Name=mRNA_P-littoralis_Contig81.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig81:178388..179242- (Pylaiella littoralis U1_48)
ATGGATCCTCTCCCAAGGCGACGAAAGGAGGGCGGGGGCGAGATCGTCGA
AGTCTACGGGTTTGCGGGTTGGATTGCCAGTCTCGTGGCGTACGCGCTGT
ACCTGGTGTGGGCGTATGTCCCGGAGAGCACGCTTCAAGCCCTCGGTATC
ACCTACTACCCCAGCAAGTACTGGGCGATTGCCATCCCGAGCGCTGTATT
TGTGACGTGGTCGGTGGCTGTCTTGGTCTACATCGCAATAAACTTCATGA
GCACCGCCCCGCTCGATTCTTTCGACACCATCACAGGTAAATGTTTTTTG
TGA
back to top