mRNA_P-littoralis_Contig81.149.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.149.1
Unique NamemRNA_P-littoralis_Contig81.149.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:514241..514895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size655
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.3189292-UTR-P-littoralis_Contig81:514240..5143071680791657.3189292-UTR-P-littoralis_Contig81:514240..514307Pylaiella littoralis U1_48UTRP-littoralis_Contig81 514241..514307 +
1680791657.360446-UTR-P-littoralis_Contig81:514655..5148951680791657.360446-UTR-P-littoralis_Contig81:514655..514895Pylaiella littoralis U1_48UTRP-littoralis_Contig81 514656..514895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.3443694-CDS-P-littoralis_Contig81:514307..5146551680791657.3443694-CDS-P-littoralis_Contig81:514307..514655Pylaiella littoralis U1_48CDSP-littoralis_Contig81 514308..514655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.149.1prot_P-littoralis_Contig81.149.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 514308..514655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.149.1

>prot_P-littoralis_Contig81.149.1 ID=prot_P-littoralis_Contig81.149.1|Name=mRNA_P-littoralis_Contig81.149.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MDGERDQVFAGSFVSSPVWFLPPSWLSSFCSEYVHGVTPPVRGMYLRDCF
WQVHTYHTGRGGRCRRECNDKYSPSCTQGRENSSSLLVRSCSLALVSLVL
FGIFSVFCGSLLDVK*
back to top

mRNA from alignment at P-littoralis_Contig81:514241..514895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.149.1 ID=mRNA_P-littoralis_Contig81.149.1|Name=mRNA_P-littoralis_Contig81.149.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=655bp|location=Sequence derived from alignment at P-littoralis_Contig81:514241..514895+ (Pylaiella littoralis U1_48)
GGTAGGTAATATCTGCGTTCGACGTGTAGCTAGGCGTGCATCTGACTGAC
TGGCATGGGGTAACCAAATGGATGGTGAGCGTGATCAAGTGTTTGCTGGT
TCTTTTGTGTCTTCTCCTGTTTGGTTTTTGCCTCCCTCTTGGCTGTCTTC
ATTCTGTTCAGAATATGTGCATGGTGTGACGCCGCCGGTACGGGGGATGT
ATCTTCGAGATTGTTTTTGGCAAGTTCATACCTACCATACCGGCAGGGGC
GGGCGTTGCCGGCGGGAATGCAACGATAAGTACAGCCCAAGCTGCACACA
GGGGCGCGAGAATAGTTCCTCTCTTCTGGTCCGTTCTTGCTCTTTGGCTC
TTGTTTCCCTGGTTTTGTTTGGCATTTTCAGTGTTTTTTGTGGGTCTCTT
CTTGATGTTAAATAGAAGTAATAATTTCGCGATCGAAAAATGTTGGGTGG
CTCTCAAGATTCTCAAGTTTCCACTTGCACCATACATTAGTAAACCGTTG
ACTACTGAATTGCTTCTCACCGACCGGTTGATTACGTATGGAATATGAAG
GACAAGTTGACGGGTCCAGCCAATGGTATTTCCGAAGGTCACAATACCCA
CAATCTGTCAGTAGTACATGGCGTAGAAACGAGGGTCCGTTTGATTCAAA
ACGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig81:514241..514895+

>mRNA_P-littoralis_Contig81.149.1 ID=mRNA_P-littoralis_Contig81.149.1|Name=mRNA_P-littoralis_Contig81.149.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig81:514241..514895+ (Pylaiella littoralis U1_48)
ATGGATGGTGAGCGTGATCAAGTGTTTGCTGGTTCTTTTGTGTCTTCTCC
TGTTTGGTTTTTGCCTCCCTCTTGGCTGTCTTCATTCTGTTCAGAATATG
TGCATGGTGTGACGCCGCCGGTACGGGGGATGTATCTTCGAGATTGTTTT
TGGCAAGTTCATACCTACCATACCGGCAGGGGCGGGCGTTGCCGGCGGGA
ATGCAACGATAAGTACAGCCCAAGCTGCACACAGGGGCGCGAGAATAGTT
CCTCTCTTCTGGTCCGTTCTTGCTCTTTGGCTCTTGTTTCCCTGGTTTTG
TTTGGCATTTTCAGTGTTTTTTGTGGGTCTCTTCTTGATGTTAAATAG
back to top