mRNA_P-littoralis_Contig81.125.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.125.1
Unique NamemRNA_P-littoralis_Contig81.125.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:404010..404679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size670
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.2402272-UTR-P-littoralis_Contig81:404009..4042861680791657.2402272-UTR-P-littoralis_Contig81:404009..404286Pylaiella littoralis U1_48UTRP-littoralis_Contig81 404010..404286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.255981-CDS-P-littoralis_Contig81:404286..4046791680791657.255981-CDS-P-littoralis_Contig81:404286..404679Pylaiella littoralis U1_48CDSP-littoralis_Contig81 404287..404679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.125.1prot_P-littoralis_Contig81.125.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 404287..404679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.125.1

>prot_P-littoralis_Contig81.125.1 ID=prot_P-littoralis_Contig81.125.1|Name=mRNA_P-littoralis_Contig81.125.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MVEESPGSYLGTELGTNVLFVVLLYRQLRSLSSIYRTARQRCSIYFKVFG
VCTSVRPVEAQACGLFSAPLGRCCSLCCLLSAVRCFHMHTPARSRKSSPA
YPSTCCVHAALECQRILCCRAIYHKECCTAA
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mRNA from alignment at P-littoralis_Contig81:404010..404679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.125.1 ID=mRNA_P-littoralis_Contig81.125.1|Name=mRNA_P-littoralis_Contig81.125.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=670bp|location=Sequence derived from alignment at P-littoralis_Contig81:404010..404679+ (Pylaiella littoralis U1_48)
CTCCATATGCCGGTGGCTGCAGCCACGGGTTATATACCAAGTTGTGCACA
GGGAAGTTTTTTTTAGGGGGAATACGTGCCTTTTCGCACGCTGCATGACA
GCAGTCCTGTGGGCAGAATTTCTCAGAATGGCAGAAGCGCAGAAGCCAAC
GCAATCTCGCCGCTTCCAGAATGCTATCCGCTTCCGAAGTGCAGCAGCTC
ATCCCTACAGCAGCACGAACTAAACACACGTATGCGCCGCGACGAACGCC
CGCGCTAGACTAGATCTCTATTTTTGGATGGTAGAAGAGTCGCCCGGCAG
TTATCTCGGCACCGAGCTGGGAACGAACGTGCTTTTCGTGGTGCTGCTGT
ATCGCCAACTCCGCTCTCTCTCCAGTATCTACCGCACTGCCCGCCAAAGA
TGCTCAATCTACTTCAAGGTTTTCGGTGTCTGCACGTCCGTAAGGCCTGT
CGAGGCGCAGGCCTGCGGCCTCTTCAGCGCACCCCTCGGTCGCTGTTGCT
CTCTTTGCTGTCTGCTGTCTGCTGTCCGCTGTTTTCACATGCATACGCCG
GCGCGGAGTAGAAAGTCCTCGCCGGCATACCCCTCTACTTGTTGTGTACA
TGCTGCGTTGGAATGCCAGCGTATTCTCTGCTGCCGAGCGATCTATCACA
AAGAATGCTGTACTGCTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:404010..404679+

>mRNA_P-littoralis_Contig81.125.1 ID=mRNA_P-littoralis_Contig81.125.1|Name=mRNA_P-littoralis_Contig81.125.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig81:404010..404679+ (Pylaiella littoralis U1_48)
ATGGTAGAAGAGTCGCCCGGCAGTTATCTCGGCACCGAGCTGGGAACGAA
CGTGCTTTTCGTGGTGCTGCTGTATCGCCAACTCCGCTCTCTCTCCAGTA
TCTACCGCACTGCCCGCCAAAGATGCTCAATCTACTTCAAGGTTTTCGGT
GTCTGCACGTCCGTAAGGCCTGTCGAGGCGCAGGCCTGCGGCCTCTTCAG
CGCACCCCTCGGTCGCTGTTGCTCTCTTTGCTGTCTGCTGTCTGCTGTCC
GCTGTTTTCACATGCATACGCCGGCGCGGAGTAGAAAGTCCTCGCCGGCA
TACCCCTCTACTTGTTGTGTACATGCTGCGTTGGAATGCCAGCGTATTCT
CTGCTGCCGAGCGATCTATCACAAAGAATGCTGTACTGCTGCG
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