mRNA_P-littoralis_Contig81.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.119.1
Unique NamemRNA_P-littoralis_Contig81.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:398372..398948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size577
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.1871412-UTR-P-littoralis_Contig81:398371..3985801680791657.1871412-UTR-P-littoralis_Contig81:398371..398580Pylaiella littoralis U1_48UTRP-littoralis_Contig81 398372..398580 +
1680791657.2119448-UTR-P-littoralis_Contig81:398919..3989481680791657.2119448-UTR-P-littoralis_Contig81:398919..398948Pylaiella littoralis U1_48UTRP-littoralis_Contig81 398920..398948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.1994474-CDS-P-littoralis_Contig81:398580..3989191680791657.1994474-CDS-P-littoralis_Contig81:398580..398919Pylaiella littoralis U1_48CDSP-littoralis_Contig81 398581..398919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.119.1prot_P-littoralis_Contig81.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 398581..398919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.119.1

>prot_P-littoralis_Contig81.119.1 ID=prot_P-littoralis_Contig81.119.1|Name=mRNA_P-littoralis_Contig81.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
MVCDTLFTAILFFGESREKGPFETRVSTCCLWPSPAEVAYPTLGLAFVAQ
RITPIRDHNSKGSFPARGQPKMILFTMLLCFHEFSHNPTVLKRFLPCQRS
GKYPDSMLVHMF*
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mRNA from alignment at P-littoralis_Contig81:398372..398948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.119.1 ID=mRNA_P-littoralis_Contig81.119.1|Name=mRNA_P-littoralis_Contig81.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=577bp|location=Sequence derived from alignment at P-littoralis_Contig81:398372..398948+ (Pylaiella littoralis U1_48)
GGTTATTTTCATCTGAAAACATGCAACACAATGCGATGGCAGAACTTCGG
CGGACTTGGCACGGTGTCTGACTAGGTTTTCAGATCTTCGATGCACTGAT
AGCTATGTTGGTGGCATGCTCAATCGGAGCGATGTCAGAAGCCGAGATCG
TGTCTCTGTGAGCACCTTCCACCCTTCTAGTGGGAAAAACAACAAAGAGA
CAACAAAATATGGTGTGCGACACCTTGTTCACCGCAATCCTATTTTTTGG
GGAAAGCCGGGAGAAAGGACCATTTGAAACACGGGTTTCAACATGCTGCT
TGTGGCCGTCGCCCGCCGAGGTTGCCTACCCTACCCTTGGCCTCGCCTTC
GTTGCTCAACGAATAACCCCGATCCGGGATCACAATTCAAAAGGAAGTTT
TCCTGCCCGAGGCCAGCCAAAAATGATCTTGTTTACGATGCTGCTGTGTT
TTCACGAGTTTTCGCACAATCCTACCGTACTGAAGCGGTTTTTGCCCTGT
CAAAGGTCGGGGAAATATCCTGACAGCATGCTCGTTCACATGTTCTAACC
ATCCACTGGAGCTGTGCAGGTTACTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:398372..398948+

>mRNA_P-littoralis_Contig81.119.1 ID=mRNA_P-littoralis_Contig81.119.1|Name=mRNA_P-littoralis_Contig81.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig81:398372..398948+ (Pylaiella littoralis U1_48)
ATGGTGTGCGACACCTTGTTCACCGCAATCCTATTTTTTGGGGAAAGCCG
GGAGAAAGGACCATTTGAAACACGGGTTTCAACATGCTGCTTGTGGCCGT
CGCCCGCCGAGGTTGCCTACCCTACCCTTGGCCTCGCCTTCGTTGCTCAA
CGAATAACCCCGATCCGGGATCACAATTCAAAAGGAAGTTTTCCTGCCCG
AGGCCAGCCAAAAATGATCTTGTTTACGATGCTGCTGTGTTTTCACGAGT
TTTCGCACAATCCTACCGTACTGAAGCGGTTTTTGCCCTGTCAAAGGTCG
GGGAAATATCCTGACAGCATGCTCGTTCACATGTTCTAA
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