mRNA_P-littoralis_Contig81.49.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.49.1
Unique NamemRNA_P-littoralis_Contig81.49.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.580e-11
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3 
Query:  636 DTSMFGTTPLLAFAKLVGDAKIDVVVKVLCTSR-DPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            DT+MFGTT L +F +LV   +ID +VKVL   + D  VGH+ + GP  FQLC+CLQLLR GL C +++A L
Sbjct:  410 DTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAAL 480
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.890e-10
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  630 DADTSMFGTTPLLAFAKLVGDAKIDVVVKVLC----TSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D D +M+GTT L +FA+LV +  I+ VV+V      T+R   V HI V GP  FQLC+CL+L+R GLPC ++ A L
Sbjct:  453 DPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAAL 528
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.840e-10
Identity = 37/76 (48.68%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  630 DADTSMFGTTPLLAFAKLVGDAKIDVVVKVLC----TSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D D +M+GTT L +FA+LV +  I+ VV+V      T+R   V HI V GP  FQLC+CL+L+R GLPC ++ A L
Sbjct:  799 DPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAAL 874
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.250e-9
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 3 
Query:  609 RQHPENGDADTSMFGTTPLLAFAKLVGDAKI---DVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            ++HP     DTSMFGTT L +F +LV    I   D VVKV+   R   VGH+ V GP+ FQLC+CLQL+R GL C +++A L
Sbjct: 1231 KKHP-----DTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKRRK--VGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAAL 1305
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.490e-8
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 3 
Query:  630 DADTSMFGTTPLLAFAKLVGDAKIDVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D   + FG   L +F +LV + KID  VKV    R P V H+ V GP+ FQ+C+CLQ++R G  C +++A L
Sbjct:   61 DNPETKFGAICLQSFFRLVANVKIDAGVKVSYKYRSPTVSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAAL 132
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.140e-6
Identity = 32/70 (45.71%), Postives = 39/70 (55.71%), Query Frame = 3 
Query:  636 DTSMFGTTPLLAFAKLVGDAKIDVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D +M+    L AF  L+ D  I +VV V          H+ V GP+ F LCSCLQLLR GLPC +  AVL
Sbjct: 1144 DNTMWARASLSAFLDLIEDIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVL 1213
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.880e-5
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 3 
Query:  636 DTSMFGTTPLLAFAKLVGDAKIDVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D +M+  T L A   L+ D  I++VV V          H+ V GP+   LCSCLQLLR GLPC +  AVL
Sbjct:  270 DNTMWAPTSLSASLDLIEDIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVL 339
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BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 4.670e-5
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 3 
Query:  636 DTSMFGTTPLLAFAKLVGDAKIDVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVL 845
            D +M+  T L AF  L+ D  I++ V V          H+ V G + F LCSCLQLLR GLPC +  AVL
Sbjct:  234 DNTMWARTSLSAFLDLIEDIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVL 303
[Close]
BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Match: A0A6H5KTX9_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 6.950e-5
Identity = 34/86 (39.53%), Postives = 43/86 (50.00%), Query Frame = 3 
Query:  606 FRQHPENGDADTSMFGTTPLL-----AFAKLVGDAKIDVVVKVLCTSRDPDVGHIGVAGPNCFQLCSCLQLLRTGLPCGYLVAVLL 848
              Q  ++G    +  GTTP        F +L+G+  I + V V          HI V GPN F LCSCL+LLR GLPC +  A LL
Sbjct:  165 LEQDGKHGSYTQTTEGTTPWARTSSSTFLELLGNVPIHLAVLVRYQLTRTKQSHIIVFGPNNFHLCSCLKLLRLGLPCRHYFAALL 250
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.580e-1153.52Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE7.890e-1048.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE8.840e-1048.68SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE1.250e-950.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6K4_9PHAE1.490e-843.06SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE6.140e-645.71SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKN6_9PHAE3.880e-544.29SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE4.670e-544.29SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTX9_9PHAE6.950e-539.53SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:183528..184385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size858
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.1383705-UTR-P-littoralis_Contig81:183527..1838241680791657.1383705-UTR-P-littoralis_Contig81:183527..183824Pylaiella littoralis U1_48UTRP-littoralis_Contig81 183528..183824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.1489406-CDS-P-littoralis_Contig81:183824..1843851680791657.1489406-CDS-P-littoralis_Contig81:183824..184385Pylaiella littoralis U1_48CDSP-littoralis_Contig81 183825..184385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.49.1prot_P-littoralis_Contig81.49.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 183825..184385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.49.1

>prot_P-littoralis_Contig81.49.1 ID=prot_P-littoralis_Contig81.49.1|Name=mRNA_P-littoralis_Contig81.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MPGVAAAYHRRRRLRLEQLRWNLRKLADLVPASGTVFGFLLFRGCLPNVA
QQEIISEVLAGRPAYSTTILKEGPDSLDYLDDLARRQADGEATGVCRELT
ESDLDSIPRTVTRTRQCLARHHCLLLQSLLETRRLTWSSKCCARRETRTS
ATLVWLGRTVSNSARVCNCSGRACRVGTWLLSSFGV*
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mRNA from alignment at P-littoralis_Contig81:183528..184385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.49.1 ID=mRNA_P-littoralis_Contig81.49.1|Name=mRNA_P-littoralis_Contig81.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig81:183528..184385+ (Pylaiella littoralis U1_48)
TATGGGTATGACTACTTTTCTTCACTTTTCTCCACTTTTTCCCACTTCTC
CCCGGCCCCTTTATTTCCGCCTTTTTTCTACGAGTACCGAAAATGTTTCA
ACTAACTTCCGACGTTTCCTTCGGTATCATTCAACACCTTTTCATGCTGG
ATAATCGCAGGTCGAGCACAACGCGGCGGACCTTTTACGGGAGAGAGTCC
GCGGAGACTGACGCCGTGAAGTCCGCGGCCCCTTTGATGAGAGAGCTAGA
CAGAGTCGGGGCCAGCAAGGTTGCCAAGTAGGTTAGTCGACCCGGCGATG
CCCGGGGTCGCAGCAGCGTACCACCGTCGCCGCCGGCTTCGCCTTGAACA
ATTGCGGTGGAACTTGCGTAAACTTGCAGACCTTGTGCCAGCCAGCGGCA
CCGTTTTCGGCTTTTTGCTTTTTCGCGGTTGTTTGCCGAACGTTGCACAG
CAGGAGATTATTTCCGAGGTGCTCGCGGGCCGCCCGGCCTACTCTACGAC
CATCTTGAAGGAAGGACCAGATTCGTTGGACTACTTGGATGACCTCGCAA
GGCGCCAGGCGGACGGCGAGGCCACGGGCGTTTGCCGCGAGCTGACGGAG
AGTGATTTAGACAGCATCCCGAGAACGGTGACGCGGACACGTCAATGTTT
GGCACGACACCATTGCTTGCTTTTGCAAAGCTTGTTGGAGACGCGAAGAT
TGACGTGGTCGTCAAAGTGTTGTGCACGTCGAGAGACCCGGACGTCGGCC
ACATTGGTGTGGCTGGGCCGAACTGTTTCCAACTCTGCTCGTGTTTGCAA
CTGCTCAGGACGGGCCTGCCGTGTGGGTACCTGGTTGCTGTCCTCCTTTG
GGGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:183528..184385+

>mRNA_P-littoralis_Contig81.49.1 ID=mRNA_P-littoralis_Contig81.49.1|Name=mRNA_P-littoralis_Contig81.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig81:183528..184385+ (Pylaiella littoralis U1_48)
ATGCCCGGGGTCGCAGCAGCGTACCACCGTCGCCGCCGGCTTCGCCTTGA
ACAATTGCGGTGGAACTTGCGTAAACTTGCAGACCTTGTGCCAGCCAGCG
GCACCGTTTTCGGCTTTTTGCTTTTTCGCGGTTGTTTGCCGAACGTTGCA
CAGCAGGAGATTATTTCCGAGGTGCTCGCGGGCCGCCCGGCCTACTCTAC
GACCATCTTGAAGGAAGGACCAGATTCGTTGGACTACTTGGATGACCTCG
CAAGGCGCCAGGCGGACGGCGAGGCCACGGGCGTTTGCCGCGAGCTGACG
GAGAGTGATTTAGACAGCATCCCGAGAACGGTGACGCGGACACGTCAATG
TTTGGCACGACACCATTGCTTGCTTTTGCAAAGCTTGTTGGAGACGCGAA
GATTGACGTGGTCGTCAAAGTGTTGTGCACGTCGAGAGACCCGGACGTCG
GCCACATTGGTGTGGCTGGGCCGAACTGTTTCCAACTCTGCTCGTGTTTG
CAACTGCTCAGGACGGGCCTGCCGTGTGGGTACCTGGTTGCTGTCCTCCT
TTGGGGTGTGA
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