mRNA_P-littoralis_Contig81.48.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig81.48.1
Unique NamemRNA_P-littoralis_Contig81.48.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig81.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig81contigP-littoralis_Contig81:179505..180946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size470
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791657.0845406-CDS-P-littoralis_Contig81:179504..1799291680791657.0845406-CDS-P-littoralis_Contig81:179504..179929Pylaiella littoralis U1_48CDSP-littoralis_Contig81 179505..179929 +
1680791657.099899-CDS-P-littoralis_Contig81:180901..1809441680791657.099899-CDS-P-littoralis_Contig81:180901..180944Pylaiella littoralis U1_48CDSP-littoralis_Contig81 180902..180944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig81.48.1prot_P-littoralis_Contig81.48.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig81 179505..180944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig81.48.1

>prot_P-littoralis_Contig81.48.1 ID=prot_P-littoralis_Contig81.48.1|Name=mRNA_P-littoralis_Contig81.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
GTRTQRYAVEVAESTRLGLALLTKPETQQSSEEQLSTQHTLCRDIKQQIS
SNIYQSVSVSWGISRAINTLRYGGVGGVGEPWQPQRRVHMSGGCGSKCSV
TRPLTIAAAGPLRPWCRPRNFFTGRRHGADSLYNSSSHYSIGIQRRHVDN
GRQKQR
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mRNA from alignment at P-littoralis_Contig81:179505..180946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig81.48.1 ID=mRNA_P-littoralis_Contig81.48.1|Name=mRNA_P-littoralis_Contig81.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1442bp|location=Sequence derived from alignment at P-littoralis_Contig81:179505..180946+ (Pylaiella littoralis U1_48)
GGCACACGAACACAGCGATACGCAGTTGAGGTCGCTGAGTCAACAAGGTT
AGGTTTAGCTCTACTTACAAAGCCCGAGACCCAGCAATCGAGCGAGGAAC
AGCTCAGCACGCAGCACACACTCTGCCGAGATATAAAGCAGCAGATTAGC
AGTAACATCTACCAGTCAGTCAGTGTATCGTGGGGCATCAGCAGGGCTAT
AAACACGCTGCGGTATGGCGGGGTTGGCGGGGTTGGAGAGCCATGGCAAC
CCCAACGAAGGGTTCATATGAGTGGAGGATGTGGGAGTAAGTGCAGTGTA
ACCCGCCCTTTGACGATAGCTGCGGCTGGGCCGTTACGCCCATGGTGTCG
CCCTCGCAATTTTTTCACAGGTCGCAGACACGGTGCTGACTCTCTCTACA
ACAGCAGCAGCCACTACAGTATAGGGTGAGAGAAATGCATTCCGCGTTGT
GTCCTGCGCTGTTGCTAAATGCATCCCCTGCATCCCGCTGATTAAGCGCT
TGTGTAATCCGTGTAAAATCGTTTCGTGTATCATTGTTTCCGCCCTCCCG
ATCATGCCGACCTCCCAATTGCACAGCAGTAGATAGCAGACTGACCCCCC
CCAGACTACGGTACGCTGCTGTAAACTTACGGTAATACTTGTGCATACTT
GCGAGCGTGTTGGGCGCGTGTAGGGCGCGTGTAGGGCTGGTGCAGTGCTG
GCAAAGCGCCATGCGCCATACGCCATGCTCAAGAGTTCCACGGGCTGTTT
TACGCACGCTGACGAACACGATGCGCGGCGCATGATGTATGTATGGTGTG
CCTGGAGATTATACATGGTGTGCCCAGAGAGGAGAACGGGCCGAGAAGAA
TAACGTAGACACAACCGTTTGTGGGAGCGCTTGCCGCTTTGAATGTGACC
GCCTGGCTGACAGCAGATTGGCCTCGCTACCACGGATATCCCCCTAACCT
GCCTGTGTCAGTCCGTCTTGCAACACGCTGCCGGCAACGTCCTAGCGTAC
GCAGCGCGGCGGTGCCAACCCGAAACACCTAGGATGAGGCGACTTGTTAT
TCGAGTCGTCCTTGCGAGATTCTACATATGGCCCGGCAGTGATGACAGAC
ACCGAAAAGTCGGACGTATTGTAGTGCGCACGGCCGGATTAAGATGAAAG
GAGAAGATATTTAAAGCAAGCAGCGGATCCCAGACTAGAGGTGTCACTCT
GCTTTGGCTGTCCCCGAGCCCTTTGTTCTTGAAGTTCTGCAATGGCTTGA
ACAGCAGTGTCGGTTCACTGATCGTCTTCTTCGTCGTGATGGCTGTCCGA
GCCGCCTTCAGACGCGGTGGCATGTTTTGCGATAAGAGGTATGTTCTGCG
CCTGATTGCCTGCCTGCCCGTGGCATTTGGCGGCCAATTTCCCGCAGGAT
ACAACGCAGGCACGTCGACAACGGAAGGCAGAAGCAAAGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig81:179505..180946+

>mRNA_P-littoralis_Contig81.48.1 ID=mRNA_P-littoralis_Contig81.48.1|Name=mRNA_P-littoralis_Contig81.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig81:179505..180946+ (Pylaiella littoralis U1_48)
GGCACACGAACACAGCGATACGCAGTTGAGGTCGCTGAGTCAACAAGGTT
AGGTTTAGCTCTACTTACAAAGCCCGAGACCCAGCAATCGAGCGAGGAAC
AGCTCAGCACGCAGCACACACTCTGCCGAGATATAAAGCAGCAGATTAGC
AGTAACATCTACCAGTCAGTCAGTGTATCGTGGGGCATCAGCAGGGCTAT
AAACACGCTGCGGTATGGCGGGGTTGGCGGGGTTGGAGAGCCATGGCAAC
CCCAACGAAGGGTTCATATGAGTGGAGGATGTGGGAGTAAGTGCAGTGTA
ACCCGCCCTTTGACGATAGCTGCGGCTGGGCCGTTACGCCCATGGTGTCG
CCCTCGCAATTTTTTCACAGGTCGCAGACACGGTGCTGACTCTCTCTACA
ACAGCAGCAGCCACTACAGTATAGGGATACAACGCAGGCACGTCGACAAC
GGAAGGCAGAAGCAAAGG
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