mRNA_P-littoralis_Contig809.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig809.37.1
Unique NamemRNA_P-littoralis_Contig809.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Match: D7FYU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU6_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.230e-72
Identity = 110/128 (85.94%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:  148 TPAATAAPIKK-RSIKVEFVQETPAGYICVVDVENFKATTNHRIVMSKDQLAKYSELAGKQVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKLVELCKQAPDLSEL 528
            TPAA AAPIKK RSI V+FVQETPAGYI VVDV+NFKATTNHRIVMSK+QLA+YSELAGK+VEVGD M Y++KYM+DKG+KLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEK+V LCK+APDLSEL
Sbjct:    7 TPAAAAAPIKKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGKKVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVALCKEAPDLSEL 134
[Close]
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Match: A0A835YV54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV54_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.220e-26
Identity = 63/163 (38.65%), Postives = 93/163 (57.06%), Query Frame = 1 
Query:   22 AALAAAAGLCSVHAFNVGVPLGVTSRQASMQ---RSRWVSMSDKATPAATAAPIKKRS--IKVEFVQETPAGYICVVDVENFKATTNHRIVMSKDQLAKYSELAGKQVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKLVE 495
            A L  AA +C   +F      GV     +     R+R + MS+     A A P    S  +K+  +QET  G+I  ++V  F+  T H+I+++K  L   SE  GK V+V   + +I+++M+DK + LDNTEGMI+A VFPVNYFT  QL+ FH ++ +KL E
Sbjct:    8 ALLTVAANVCPACSFQAWTRSGVGRAAVASSAKCRTRALLMSEAPASEAPAVPAAPASLDVKIAGMQETAGGFISHLEVHIFRTVTTHKIIIAKANLQDLSERTGKPVDVEQVLKHIVEFMVDKKMPLDNTEGMIDAGVFPVNYFTAGQLAQFHPELWDKLAE 170
[Close]
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Match: W7TI06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TI06_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.870e-21
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:  145 ATPAATAAPIKKRSIKVEFVQETPAGYICVVDVENFKATTNHRIVMSKDQLAKYSELAGK---QVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEE 483
            A+PAA A    +R I +  V E+  GY+  V+V+NFK  T H ++ SK+   +   LAGK   ++ + D+   + K+++ KGL L  TEGMI+A VFP+NYF++ QL+ F DD  E
Sbjct:   54 ASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVE 169
[Close]
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Match: A0A7S1K9Y0_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9Y0_9ALVE)

HSP 1 Score: 80.1 bits (196), Expect = 5.330e-15
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:  187 IKVEFVQETPAGYIC--VVDVENFKATTNHRIVMSKDQLAKYSELAGKQVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKLVELCK 504
            IKVE+V E   G++   V+D    K TT H + +           A ++V+    + YI K+M+D+ + +DNTEGMI++SVFPVNYF+  Q+ Y H+D  ++L ++ +
Sbjct:  146 IKVEYVDEWNGGWMSDVVIDYGGGK-TTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVE 252
[Close]
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Match: A0A0G4H3W5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3W5_VITBC)

HSP 1 Score: 80.1 bits (196), Expect = 2.610e-14
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:  187 IKVEFVQETPAGYIC--VVDVENFKATTNHRIVMSKDQLAKYSELAGKQVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKLVELCK 504
            IKVE+V E   G++   V+D    K TT H + +           A ++V+    + YI K+M+D+ + +DNTEGMI++SVFPVNYF+  Q+ Y H+D  ++L ++ +
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGK-TTKHTVTVGFFLYNDVVTKANREVDPETLVKYIFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHEDFRDRLADMVE 571
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig809.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYU6_ECTSI2.230e-7285.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV54_9STRA3.220e-2638.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TI06_9STRA7.870e-2141.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1K9Y0_9ALVE5.330e-1537.04Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4H3W5_VITBC2.610e-1437.04Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig809contigP-littoralis_Contig809:105725..114778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size531
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002530.1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791656.9155188-CDS-P-littoralis_Contig809:105724..1058021680791656.9155188-CDS-P-littoralis_Contig809:105724..105802Pylaiella littoralis U1_48CDSP-littoralis_Contig809 105725..105802 -
1680791656.9290063-CDS-P-littoralis_Contig809:106883..1070571680791656.9290063-CDS-P-littoralis_Contig809:106883..107057Pylaiella littoralis U1_48CDSP-littoralis_Contig809 106884..107057 -
1680791656.938844-CDS-P-littoralis_Contig809:107244..1073501680791656.938844-CDS-P-littoralis_Contig809:107244..107350Pylaiella littoralis U1_48CDSP-littoralis_Contig809 107245..107350 -
1680791656.9528618-CDS-P-littoralis_Contig809:113452..1135561680791656.9528618-CDS-P-littoralis_Contig809:113452..113556Pylaiella littoralis U1_48CDSP-littoralis_Contig809 113453..113556 -
1680791656.966433-CDS-P-littoralis_Contig809:114709..1147781680791656.966433-CDS-P-littoralis_Contig809:114709..114778Pylaiella littoralis U1_48CDSP-littoralis_Contig809 114710..114778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig809.37.1prot_P-littoralis_Contig809.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig809 105725..114778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig809.37.1

>prot_P-littoralis_Contig809.37.1 ID=prot_P-littoralis_Contig809.37.1|Name=mRNA_P-littoralis_Contig809.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
MKFNGPAAALAAAAGLCSVHAFNVGVPLGVTSRQASMQRSRWVSMSDKAT
PAATAAPIKKRSIKVEFVQETPAGYICVVDVENFKATTNHRIVMSKDQLA
KYSELAGKQVEVGDFMTYIIKYMMDKGLKLDNTEGMIEASVFPVNYFTLK
QLSYFHDDVEEKLVELCKQAPDLSEL*
back to top

mRNA from alignment at P-littoralis_Contig809:105725..114778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig809.37.1 ID=mRNA_P-littoralis_Contig809.37.1|Name=mRNA_P-littoralis_Contig809.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9054bp|location=Sequence derived from alignment at P-littoralis_Contig809:105725..114778- (Pylaiella littoralis U1_48)
ATGAAGTTCAACGGGCCAGCAGCAGCTCTCGCGGCCGCGGCAGGGCTATG
TTCGGTGCATGCGTTCAACGTGAGACCTAAGTCAAGTGTACACATGCTTG
CTTTATTTGTACAGCTCAGAGTGTCTTTGTCAAATGAGACTGTTGTGCGA
TTTTCACTCCCTTGCTGCACTCGCGTAGTTGCCTTGGTCAAACAGCGGGT
TGTATGCATCGATTCTGGCCTCAATTCTGGCCAGGTTCTCTCCGCCGATC
TCTGTGTTTACAACTTTCGAAGCATCATACAGGCCGAATGAATTGATCGG
ATCATGTTTGCGTCGTTCGAGTCCAACCACGCTGCTGTTACGAATCGGGG
ATTTACACCAACGTAGCGAAGTAGCTTGTCCTGATCATGACTCGTGGATT
CTCATTGCGGTGATACTCGTTGGTTGGTTGCACTCTAACCAAGCCAACCG
AGAAGCTACACCTTATACTACACGTGCACGTGATCGTGTTCACGTCCCAA
ATATGATACTTGTACTTCGAAATCATCCAGTCTGTACAAGTAATACTTCG
AAGTACTGCCAATGTACTTCGTATGTAAATGATTCTACTTCGTTCAGGCA
GGTATACATTATACGAAAGTACTTCTATTCAGCAGCGCAAACAACAGCAG
CGTTGTCGTACTGGCTGTATGAACAAACGTTGTCCTGCTTTGAAGGTTGG
TACTGCTTTGAAGTCGATACTTCAAAGCTTCTGTAAACGATACTTCGTAC
TTCGAAGTATCATATCATACATCTTCGCTAAACAGAGCAGGAAACTATGC
TGCGGTATCTATGGAGCAGTGTAAACAACAGCAGCATTATCATACTGGCT
TTGTGAACAAGCTTGGCAATGCTTCGAAGTTAATGCTTCAATGTTTTTGT
AAATTTGTTGTTGAGCGCTATTCCATTTGTATATAGCATAACCCTGTTCG
TGATTCGAAGTGCTGCTGTAAATGACAGCAGTGTTGGAGTGTTCGAGGGC
ATGCTCGAGCCAAGTCGACAAAACCTCAGTCCATTCGATACGCTTCGTGG
TATGCTGGTATGCATGCGTGTATGAAGGTTTGGTTTAAAAACCCATAAGT
TTCGTGTCGGAAACACCAGCTGAGTGAGTTACCTTTGCGATCTGAGAACA
TGCGTTTTTGCACACGAGTACACGTAAATCACTTCCTCTTCCTTGCACAC
GTCTGCGTTATCTATTCTTCAGGTCGGAGTCCCTCTCGGAGTCACCTCGC
GGCAAGCGAGCATGCAGCGTTCAAGATGGGTGTCCATGTCGGATAAGGCA
ACACCGGCGGCTACCGCAGCGCCGATGTAAGTGATTGGATTTTCAGCGGC
AACACACACGGCAGACAGCTCTGACCTTGCATGCGGACAGCGGCAGACGT
ATCTGTCACATCATACCGCACTTCTGTATGATACAACAGCAGGCCCTTTT
ACAAAGCTTATTTTGAAATCTACGACTCATTTTACCTGGTCGTGTCGTGT
GCTAAATTTTGTCGTGACCGCTATCTTAAATCTTCAAAAACAAATTTGCC
CCGAAAAATTCCGAGGCTGTAAGGGGGGGAGATCGCTCGGGGGTGCGCCT
CAAACTGTGCGTCCTATGATAAGCTAGTATACGCGGAGCGAGAAAAAGGG
TGCGGGTAAAGTCTAACAACTGCTTTAAGTGCATTAGGTAACCCTTGGAT
CAGGGGATCCCAACAAAAAATTGCCAGGGGAAACCCTACGCTACAGGACC
CTTAACCAACCTCGTTTGTGAGTGCACGATTTCTCAGACTTCGAGTAATA
CAGCAACACGTGAAAACCATTGAAGCTCTCGAATCAAAAGTTCGACGGTT
TACAGCACTGCGACGTCGTACTGCTGTAATACGGCCGGGTGCTGCTTGCT
GTGAACGCTATCTCAACAGAGTACCTGGTATGATTTCGTAAAACTGGTCT
GGGACACACCGATTCGAGCTAGCTCTTTGGTTTTTATTTTCGTATTGATA
GCAGCGTACCAAACCGTGAAAACAAATACGGAATCGTGCAAGTATACGCT
TCCCTGAGAGTAGCTTTATTTACGTATTCACCTCCCGGCATGGTACGAAA
ACTCATTTTCCTGTTCGGGAAAACAGCGTAGTCCCCCAAAAAAGCAGGTA
GTACGAGATATTTTTGTCTTTGCCCTATAACAACGAAGGCTCCTTAAAAG
ACAAGACGAAATCTTCTACTTTTTGTCTCGAACCCACCTCACGAAACCCC
AAATAAATACGAAATCTTACACGCTTTGCACTGAGAATAGCTGTGTTCAC
CTCCTCCCCAAATGTATTCGAAAAATCGTTTTATTTGTCGGGATAGCAAC
GTAGCCCCCCCCCATACGAAATCGTACTGGCTTTGCCTTATTACTTCGTA
TAGGAACAGCGTTGCCCTAATATTTCGAGAGCTTGAATGGCTCTCAAGTT
GTACTCTTCGAAATCGTAAACTCACGAATGAGGTTGAGGGTCCTCTAGTG
CAGGGTTCCCACGGCAATTTTTCTCGGGGTCCCGTCATGCAAGGGTTCCC
CTGGCGATTTATGAGAAAAGGTCCCCCTGGTGCAAAGTTTCCCTAATGCA
CTACACAGCGATACCGGACCAGGCTATTTTTTTCAGGGCTATACCGCGCC
GGATGCGATGGTAAGGAAAAGCTCGCTGCAGCCGGAATTTTTGTTGGCTT
ACGATCACGTGGGGTGGGATGGTATTTTAATCGCTCGTTGGTGTTATTGA
GATGGGATGGGAAGGTTTAATATATTTTGATGTGATGGGACGGTAGTGGG
CGCGGTACGCTGATGGGCTAGGACTAGGTCGGGCGCCATCATGTGGTGGG
TGGTAAATAAATGTAGTTGCCCAAACTAACAACGAAGTAGTTTGAACCCT
CCCCTTCAAGGGGGTTCCGTTGATTCCAAAAACTTCAGGCAGGGAATAAA
TCGGTACGTTCTGGCTGTCCAAACCCCTTGACCTCACTGCCTTTCACGGA
GCACACCAACACAAACACCGCGGAACCTGCAGGAGGTACAAAAATAATTG
TATGCTCCTTCACTCTCACTCCTGGCTTTTTTTTCAATGAATTGCAGCTC
AAATAAAATGGAACTAAGTGTTGCCTGAAACGTTTGGGTCTTGTCTGATT
GCCAGATCAAGACATACAGATCAGTCAGCCAAAATCAACTAAGCTGTCGC
GTCAGGGCGATGCAATGAAAGGGGTTTGGGTCCATACCATCGGCATTGTG
TCCTGCGAGATAAGCGTCACCGCTGAAAAGTTAAAGTTCCTGCGAGTGAG
GCGTTTGTTTTTTCTCAAAATAATCGAAAAATGCGGCGTAATAAGTGTTC
GGGGACCCGATGTGTGAGCTGGAGCGTTGAAATCTGTTGAATGCGGTGAA
GTAGCGCCAGGTGGGTGTGGCTATGAGTCAGTCTTGCTCCGCCAAAAATA
TAAGAATATGAGGCAATCCATTCCCACAGCGTGCATTACAGCAATTGTTT
CGATTTGCATTTTGTATTGTATCGGAGTGGTTTCATGTTGAGTTCGGTGG
AAATGTCAAAAGTGAAGTTGTGTGTGATTGTGGATGAGATGGTAGGGTAC
CTCCAGGTGCTGTGGTGGTTGAGCCGATGGGGTGGGAGATGGAGATCCAG
CAGATGATAAGTTTCGACGTCGTGATGGTGATGGGATGGGAGCTAGTGAT
GGGACGCAATTACTCCGCACCATTCCATCATCTCATCATTGACGGTATTA
CCATCCTATCTAAATACTACTGTTTAGTTCATTTTTTTTTGCTTTTTCCC
GCCGTACTAATCCGGTCGCCCCGGTGGTTCAGGTGGTAATCTTCGTAACC
TTCTGACATTCACGCGTGAGTTCGAATCCCAGTGCAGTGATACGATCTGG
GTTTTTTCTCACAATGCGCGTGAAAGTGGAAAGCGATTAATTCGTGAGTA
GACAAAATTCAATCGTACCATCGACGAGCGAAAAGGATTGCTGTTCCCTT
TCTCGCGATAAAAGCTCAACCAAAACAAGGCAAGCACCGCAGTGGAAAGT
GGAGAACAAAAAAAAAAAACACCTGTGTTGACTTCCCCTGTGTGACCCCA
GTTGGAGCGTCGACCTACCCGAAAGGTGTAGAGTGGCGTCCAATTAAAGG
GATGACAACACACACAACACACACACACACTGCTCTGACCTTAGGCTACA
TCTTATGTATAAAAAACGTCATTGTTTTTTTTGGGCCTTTCGAATAATAT
CGTTTCCAACAGGCCTTTTTGAAGGACCTGATCTCATGTGTCAAGACCGA
ACACCAGGTGGTTTAGAAAAAAACTTCTGAAAAGAAAAGTCTCTCCTGTC
CGCGGGGCGATGATTGACAACTTGCCATTTATCGTGCTCTGCTGTTGTAA
CCGGTTCGCTTTTTCGTCCACCACTCTCGAGCGAATGAACCCATAGCAAT
GGTAAGGACATGCCTGGCGAGCAGGGTACATGGTTCTTCTTCTCCCGTGG
TCATCTGAGGCCTCGAGATATCGATAGATTAGCGAATAAAGGTTGCAGGC
ATCATCGGTTACGTGTGAAGAAACGAAAAAAAATTCATGCAGCTCACCAG
CAAATGATGATTTCTTCTTTTTTCCGAAGGCCATCAATTCCTGCAATCCT
TCAACGCCAGCCTATCGATGCCTCGCTGCTTCAGAGGACCACCGGAGGAG
AGAGACCATGCTCATAGCTCGTGAGGCATGGCTTTACCAATGCCGTGGCT
CCATTCTTTCGAGAGCGGTCAACAAAAAACCAAGCTGGTTTTGGCGGCAA
AAGTACCTGCTGCTGCGTTGAAGAGTTCAGGGGACAGCAACAACAGGATC
AGCTACCTATCAGCTTTCGTCCTATCCATTTTGGTGCTTGGTCCATCGCT
CTCGAACGAAGTATCCACAGCAATACTAAAGCCATCGGCCGTGAGGTGTG
TGTGTGTTCCTTCTCCTGCGTCGGTCATCAGAGGCCGCGAGGAAACAATG
GGCTACCAAAACAAAGTTTGCAGGTCATCTCATCGTGCAAAGCTGACTCT
GACGTGGGATGTTCAAACTCCTTGACCCAAAAAAGCCAACAGGTTTCCGA
TAGGTACAGGCTATCCTAGAAAATACTTTTTCTGATCGCTTGGGGCTTTC
GGAAAAAAGGTGTTCGAAAAGTCGCTGTCTAAAATGGCTGTTTCTCATCA
CCCACAGGCTTTCCTGCAATTTGGTGCAAAGTTTCTGTGCCAAGTTTCCG
GTGTCTTCTAAGCCAACGAGCTGACAAATCATCGAAGCAAAAGCGTTTAA
TCCCTTCAACCCACAGCAGTGATAAGCTTTGGTGTCGGTCCAGCTCAGGT
CCACTTTGCGTTTTTTTTTAACCACTTCTGCAACCCTCGATACCTCAGCC
CCAGCAACATGTCTGAACGTGCAGACACACACATAGCTGCTCCATGGTGC
CTTCTACTGATAGGAGTACTGTGACTGGTACTTGTACAACTGACCAAGTG
AGAGGTTAAGCCAAACAAGCTGTTTTGACTTGATTGAAGAATTAAATTTT
ATCCTTTAGATTTAAAGTGAGATTTCTCCGCAAGGGTTTTCTTACCGCCC
TTGTCAGTGGAGTCTACAAATGAGCAGCGAGCCAGGCACCTTTGTCCTTA
AATCGCATTCGTTTGATCTCCTCGATCGATCGCTTTCATGCAGCTTCTCC
GTAAAGGTCTGGAAGCGCGAGACCGAGGTGCTCAAGACAAACGTTTTGAG
CACGAAATCCTCGCATAGAATTTGTGGTGAAAACACCGCAGAAGTATGCT
TCAGTTGTGGAACATGGCACGCTCATCACAGGCCACCACACCTTCTCACG
AGAGGTCTGGAAGCGCGAGACCGAGGTGCTCAAGACAAATATTTTGAACA
CTATCTCCTCGCATGGAATTTGTGGTGAAAACGCCGCAAAAGCATGCTTC
CGTTGTGAACCATGGCATTCTCATCAATAGCAAGCACACGCTCGAACTTG
CAACATCCTACTGATGTGTTCTGTGAGAGGCGTCTCATGCCTTGACAACA
GCAGCAGACACCCAGAAAACATCTTAAAGTTATACTTCGTACGTAGGATT
GTACCTAAAGGGGAGATCTACTGTGGCGTTAGCGCGATGCTGCCGTTCTC
CGCGTGTTTATCGACAAACGGATTCGACGCGAATGTAGCTGGTACACCGG
GGGAATTTCATGGTACTAAGATCGGGAAGGTTGAACGCCTGCAGGAAAGC
ATATACTTTGCGGCCCACAAAGCCCCCAACATCTTTTTACTGTCATTTTT
TGTCCCCTCAACTGAAGGCTGCAATTTTCAAATCCCCGACTTATTTGACC
TCTTTTTTAGTTCGTATTAGTTGTTTTTTTTGCGAAACGCCGTTCGGTTC
CAAAACCCTTGAGCTACTCAATTTTGAGGGCTTACAACTATTACCAAAGC
TGCAGACAATTTTTTTTTGTGGTAGCAGAACCTTCTGTAGGTCATTAAAG
TTTTGTTGTAAAGTAAAATGAAGATATCGGACGTGGGAATACTTGCATGA
GTAGCATATTGGAAGTCCAAATGGGGACGATTTTGACAACTATTTTTCAA
TAACTTAACCTTTTGTGTGTGGCGATCTTGCCTGTTTTTTTTTTTTTCCT
GCCGCCGCGCGCGGTCCAGGACTACTGCTGTTCGTGAACCAACTAAGCGA
ACACATTCGAACCAATTTCACCGTGTCTCGTGCAAATTTCCCGGTTCCGC
CATGCCCTGTGGTGTTGCCGCTGCTGTATTGTTTATCGCACATGCTGCAG
CAACCTGTCGTAAAACCTTCACAAGAAGCTTTTGTGTAGCCGAGCACCCC
ATTTCAAATTGACGTGTATCATCAAAGCCTTACACCAATCCCTCAAAGAG
TGAGCGAGACGTTTTTTTTTCAGGACAGTAGTGCACCTGGGCCAATCATC
ATTGCACCGAACTTTGGCAATGTGTTGGACATTTCATGTTTCCAAGCCCC
TGGTTGCTTAAGAGTGAACAGGGTGTTTCTTGGGTCGCCACTCAAAAGTG
CTTCGAATGAAGCTGTTAATGGTCATGTTGGATATGACGTTGGTGATTCA
GTCATAATCGAGCTCAAGAGTCTCGCTTCGATTTGTCGTTTTTCCAGGAG
GTGTTTGGGCGGCGGGCCCTGCAACCTGGTTTGAACACGCATGTACCATT
TTTTGTGTCGAAGCACAGCACGTATCAATTGATCCTTCATGTAGGGTTTG
TAAGTCGACCACGACCAGCGAATGTTCAGGAGTGGACAAACTAGCGAACT
AGCGAACACCAGGTATAATTTAAGGGCACAACACCCCGTATGCCGATGCA
GCATGCAGCGTAACCAGCCTTCGGCCCTTCAATACGAAAATGACAGAGCT
GTTTGCTCGAAATCTCCTCGCCCCGCAGAAAAAAGAGATCCATCAAGGTC
GAGTTCGTCCAAGAGACACCCGCGGGATACATCTGTGTCGTGGACGTCGA
GAACTTCAAGGCGACAACAAACCACCGGATAGTGGTAAGACTCACGGCCC
AAAACGTTAAAATGCTGAAAAGATGCCGGTATATATGCACCTGTTTTACT
TATGAGCGCAAGATTGGGGCGAAATTGGGCCTGTTCAGCATTCATTCATC
AGGACGCTACGACGAAAACCGCGTGTCCGAAGACTACCTCTGCTGTTCAT
CGTTTTCCCCACGTTTCGCAGATGTCCAAGGACCAGCTTGCAAAGTACTC
GGAGCTTGCAGGAAAGCAAGTGGAAGTCGGGGACTTCATGACATATATTA
TCAAGTACATGATGGACAAGGGGTTGAAGCTCGATAACACGGAGGGCATG
ATCGAGGCCTCCGTGTTTCCCGTAAACTACTTCACCCTGAAGCAGGTGCG
CAGCCAGTCGACTTTGCTGCAGGCGTTTGCAAATATTTCCCCAACACTGA
AGTTCAGGAATCGGTCCGACTGATCCTGTTTTTTTGCTAAAAACAGCAGC
GCCCAATCTCAGTCCTCACTCGAAAATGACAACCCAGATTGCTCAGAATG
AGTTTTCTGCACCTATTCCCGAGTTGAAGCATGAAATTAGCAGCAGGCAC
CATGTAGCGGCGACCTGCGTGTTGGCATGGCACTCTTAGATCTGCTGCTG
GGGCCGAGATGTCGGAGGTCGAGGTCGGCATATTTTATTCGGGAAGTCCT
TAATTAGTCCCGCAGCTCAGCCAGACCCCGTGCAACTGCCACTGCGCACC
CGTTGCCATTGCTCCGCTGCGGGTCTACAGCAGTAGCTAGTGATGACCGT
ATCTCTTGACACCACCTACCGTTGTAGACCCGCAGTTCACGAGATGAGAC
CCGTGGCGACGAGTACAGCAATGAACACGAACAAGGTATTCGGGGTCTGG
CCGAGATGCGACTTCCAAAACAATAATCGACGTCCGATATATCGGTCCTG
GAGATCTTAACCAACTCGCACGTAACCGCCACAAGGTGTCTTGTCTTCTG
CTGATTTGATCTCATGCTCTCCATCGGAAAAACACACACGAGAACGCTTG
TTCTAAGCAATCTGTGTTGTGTTGGAACTGAGTTGAGACCGGGCATTTTC
TTGAGCAAGAAGAAACGAATGCAGTTGGACAGCACAAAAAGCTGGCAAAA
ACGACACGTCCTCCGTCATTCTAGCGACGCCAAGAGAGCGAACGATTTGG
GGGGGGTGGGGGGGGTTCGAAACCCTTGTTTCGTGGTATTTGTTCGTGCG
AACACTCGTGTCTGGGTGGTAGAAGGCGAAATAACGAAATAACATCAACT
AAAATAAAACGAGGGTCCGTTTCAGTCTCGGTTGCACGAGTCTGTCGTTG
AGCTATTTTTTTGGAGCTGTTTTAAACGCAACATTATGAATACCGTATCT
TGTATCATGTCACAACGGTAATCGACGCACGTCCCATGCCCTCGCGGTCT
CTTGTTCAATTGCCGCCCTTGTGCAGCTGAGTTACTTTCACGACGACGTG
GAGGAGAAGTTGGTGGAGCTGTGCAAGCAGGCTCCCGACTTGTCGGAGTT
GTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig809:105725..114778-

>mRNA_P-littoralis_Contig809.37.1 ID=mRNA_P-littoralis_Contig809.37.1|Name=mRNA_P-littoralis_Contig809.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig809:105725..114778- (Pylaiella littoralis U1_48)
ATGAAGTTCAACGGGCCAGCAGCAGCTCTCGCGGCCGCGGCAGGGCTATG
TTCGGTGCATGCGTTCAACGTCGGAGTCCCTCTCGGAGTCACCTCGCGGC
AAGCGAGCATGCAGCGTTCAAGATGGGTGTCCATGTCGGATAAGGCAACA
CCGGCGGCTACCGCAGCGCCGATAAAAAAGAGATCCATCAAGGTCGAGTT
CGTCCAAGAGACACCCGCGGGATACATCTGTGTCGTGGACGTCGAGAACT
TCAAGGCGACAACAAACCACCGGATAGTGATGTCCAAGGACCAGCTTGCA
AAGTACTCGGAGCTTGCAGGAAAGCAAGTGGAAGTCGGGGACTTCATGAC
ATATATTATCAAGTACATGATGGACAAGGGGTTGAAGCTCGATAACACGG
AGGGCATGATCGAGGCCTCCGTGTTTCCCGTAAACTACTTCACCCTGAAG
CAGCTGAGTTACTTTCACGACGACGTGGAGGAGAAGTTGGTGGAGCTGTG
CAAGCAGGCTCCCGACTTGTCGGAGTTGTGA
back to top