mRNA_P-littoralis_Contig809.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig809.6.1
Unique NamemRNA_P-littoralis_Contig809.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-19
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  208 SMTARPAGAASPNADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 534
            SMTAR  GAA P  +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   53 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 160
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BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-19
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  208 SMTARPAGAASPNADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 534
            SMTAR  GAA P  +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:   57 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 164
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BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.550e-19
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  208 SMTARPAGAASPNADDSEFFGDPE-GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 534
            SMTAR  GAA P  +    F DP  GEE+E L+G  P++++    +A + +HA   P T+RA I   A  +AIGAGC H+ PLVTWK+D A+A TCG HQA+++    +Q
Sbjct:   10 SMTARSRGAA-PEGEPDPIFDDPVVGEEIEGLMGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLVGNADLQ 117
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BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.110e-15
Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:  211 MTARPAGAASPNADDSEFFGDPE---GEELEELLGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIA 519
            MTARP GAA    +D+  F DP    GEELE LL  +P      P +A + +HA   P TIR  I   AA+LA  +GC H  PLVTWK+D+ AA+TCG  QA +++
Sbjct:    1 MTARPDGAAEEGGEDT-LFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS 105
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BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Match: A0A6H5KMD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMD0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  301 LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATPLVTWKEDKAAASTCGLHQANIIAGIRMQ 534
            +G  P++++    +A + +HA   P T+RA I   A  LAIGAGC H+ PLVTWK+D A+A TCG HQA++I  + +Q
Sbjct:    1 MGDPPSVSD-DEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLVTWKDDPASAVTCGKHQAHLIGNVDLQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig809.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KC65_9PHAE1.530e-1948.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE1.600e-1948.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE7.550e-1946.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG3_9PHAE1.110e-1547.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMD0_9PHAE1.470e-1346.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig809contigP-littoralis_Contig809:6793..7326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791656.1836872-CDS-P-littoralis_Contig809:6792..73261680791656.1836872-CDS-P-littoralis_Contig809:6792..7326Pylaiella littoralis U1_48CDSP-littoralis_Contig809 6793..7326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig809.6.1prot_P-littoralis_Contig809.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig809 6793..7326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig809.6.1

>prot_P-littoralis_Contig809.6.1 ID=prot_P-littoralis_Contig809.6.1|Name=mRNA_P-littoralis_Contig809.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MSTCGSPDATRPRTDIGGSVGGGDKLKVKASSSVPNSPQQIQQQQQQEQQ
QQKPKDDEGNGTGAVAAGPSMTARPAGAASPNADDSEFFGDPEGEELEEL
LGQTPNIAELPPAVAELEEHACSDPATIRAKIATLAAKLAIGAGCNHATP
LVTWKEDKAAASTCGLHQANIIAGIRMQ
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mRNA from alignment at P-littoralis_Contig809:6793..7326-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig809.6.1 ID=mRNA_P-littoralis_Contig809.6.1|Name=mRNA_P-littoralis_Contig809.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig809:6793..7326- (Pylaiella littoralis U1_48)
ATGAGTACCTGCGGTAGCCCCGACGCCACGCGTCCCCGCACAGACATCGG
CGGTTCTGTTGGGGGAGGTGACAAATTGAAGGTGAAAGCCAGTAGTAGTG
TGCCAAATTCGCCGCAACAAATTCAGCAGCAGCAGCAGCAGGAGCAGCAG
CAGCAAAAGCCCAAGGACGACGAAGGTAACGGCACCGGCGCTGTCGCGGC
AGGGCCTTCGATGACTGCCAGGCCCGCTGGGGCCGCCAGTCCCAATGCTG
ATGACTCCGAGTTCTTCGGCGACCCCGAAGGGGAGGAGCTCGAGGAGTTG
CTGGGGCAGACGCCAAACATCGCGGAGCTGCCTCCTGCCGTGGCGGAGCT
TGAAGAGCATGCCTGTAGCGACCCGGCCACGATCCGGGCTAAGATCGCGA
CACTGGCAGCGAAGCTGGCGATTGGGGCGGGATGCAACCACGCTACACCT
CTTGTAACATGGAAGGAGGATAAGGCCGCTGCGAGTACTTGTGGGCTTCA
CCAGGCTAACATCATAGCCGGGATACGCATGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig809:6793..7326-

>mRNA_P-littoralis_Contig809.6.1 ID=mRNA_P-littoralis_Contig809.6.1|Name=mRNA_P-littoralis_Contig809.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig809:6793..7326- (Pylaiella littoralis U1_48)
ATGAGTACCTGCGGTAGCCCCGACGCCACGCGTCCCCGCACAGACATCGG
CGGTTCTGTTGGGGGAGGTGACAAATTGAAGGTGAAAGCCAGTAGTAGTG
TGCCAAATTCGCCGCAACAAATTCAGCAGCAGCAGCAGCAGGAGCAGCAG
CAGCAAAAGCCCAAGGACGACGAAGGTAACGGCACCGGCGCTGTCGCGGC
AGGGCCTTCGATGACTGCCAGGCCCGCTGGGGCCGCCAGTCCCAATGCTG
ATGACTCCGAGTTCTTCGGCGACCCCGAAGGGGAGGAGCTCGAGGAGTTG
CTGGGGCAGACGCCAAACATCGCGGAGCTGCCTCCTGCCGTGGCGGAGCT
TGAAGAGCATGCCTGTAGCGACCCGGCCACGATCCGGGCTAAGATCGCGA
CACTGGCAGCGAAGCTGGCGATTGGGGCGGGATGCAACCACGCTACACCT
CTTGTAACATGGAAGGAGGATAAGGCCGCTGCGAGTACTTGTGGGCTTCA
CCAGGCTAACATCATAGCCGGGATACGCATGCAG
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