mRNA_P-littoralis_Contig808.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.31.1
Unique NamemRNA_P-littoralis_Contig808.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.950e-68
Identity = 112/116 (96.55%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKK GDKK  NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.970e-62
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKK GDK  K KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.060e-61
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKK  D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.060e-59
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDK--KTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKS KAPKK G+K    K KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.060e-59
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+ KAPKK  D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 187 bits (474), Expect = 2.580e-59
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK+ KAPKK G K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
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BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 183 bits (464), Expect = 9.190e-58
Identity = 96/116 (82.76%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+S KAPKK        KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 3.090e-57
Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 1 
Query:    1 MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSKK+  APKK G K+++ KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    8 MAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120
[Close]
BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.460e-55
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 1 
Query:    7 KTPSKKSVKAPKKVGDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            KTPSK+S KAPKK     +K+K RTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 176 bits (446), Expect = 5.780e-55
Identity = 97/119 (81.51%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MAKTPSKKS-VKAPKKV--GDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 345
            MAKTPSK++  KA KK   GDKK ++K R ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.950e-6896.55Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.970e-6287.07Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA3.060e-6188.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.060e-5984.75Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA2.060e-5988.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU2.580e-5984.35Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC9.190e-5882.76Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA3.090e-5784.35Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA4.460e-5582.61Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
B8BX20_THAPS5.780e-5581.51Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:101052..101411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue3.2e-69
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size360
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791656.0787938-CDS-P-littoralis_Contig808:101051..1014111680791656.0787938-CDS-P-littoralis_Contig808:101051..101411Pylaiella littoralis U1_48CDSP-littoralis_Contig808 101052..101411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.31.1prot_P-littoralis_Contig808.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 101052..101411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.31.1

>prot_P-littoralis_Contig808.31.1 ID=prot_P-littoralis_Contig808.31.1|Name=mRNA_P-littoralis_Contig808.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MAKTPSKKSVKAPKKVGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSSYSA*
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mRNA from alignment at P-littoralis_Contig808:101052..101411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.31.1 ID=mRNA_P-littoralis_Contig808.31.1|Name=mRNA_P-littoralis_Contig808.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig808:101052..101411- (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCCTCCAAGAAGTCCGTCAAGGCCCCCAAGAAGGTTGG
CGACAAGAAGACAAAGAACAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGCGGC
ATGTCGATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTTACCCGCTACAACAAGAAGGCGACCCTGTCCTCGC
GCGAGGTCCAGACCGCGGTGCGTCTCATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTGTCCGAGGGCACGAAGGCTGTCACCAAGTTCACCTCTTCCTA
CTCGGCGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:101052..101411-

>mRNA_P-littoralis_Contig808.31.1 ID=mRNA_P-littoralis_Contig808.31.1|Name=mRNA_P-littoralis_Contig808.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig808:101052..101411- (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCCTCCAAGAAGTCCGTCAAGGCCCCCAAGAAGGTTGG
CGACAAGAAGACAAAGAACAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATCTCCAAGCGCGGC
ATGTCGATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCCGGCAAGCTTACCCGCTACAACAAGAAGGCGACCCTGTCCTCGC
GCGAGGTCCAGACCGCGGTGCGTCTCATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTGTCCGAGGGCACGAAGGCTGTCACCAAGTTCACCTCTTCCTA
CTCGGCGTAG
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