mRNA_P-littoralis_Contig808.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.22.1
Unique NamemRNA_P-littoralis_Contig808.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.590e-37
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLNTDY 318
            +YG LAA QDAD  +LMG L +D +HLNKNG S+APNG G TGLVD+T FFNPI+   G    +++ TL KI+ATQ+VEMFF+S   PEYKF VWRE+V SL+TDY
Sbjct:  609 KYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDY 714          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 4.930e-37
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLNTDY 318
            +YG LAA QDAD  +LMG L +D +HLNKNG S+APNG G TGLVD+TTFFNPI+   G    +++  L KI+ATQ+VEMFF+S   PEYKF VWRE+V SL+TDY
Sbjct:  518 KYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDY 623          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.310e-35
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLNTDY 318
            + G LAA QD D A+LMG LA+D +HLNKNG S+APNG G TGLVD+TTFFNPI+   G    +++  L KI+ATQ+VEM+F+S   PEYKF VWRE+V SL+TD+
Sbjct:  376 KNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDF 481          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.200e-34
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLNTDY 318
            +YG LAA QDAD A+L G L++D  HL+KNGL +AP    LTGLVD+ TFFNP++    +++  L K LGKI+ATQ+VE FF+S  NPEYKF VWRE+V SL+TDY
Sbjct:  136 KYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDY 240          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.960e-20
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENGEDEPDLKKTLGKIIATQHVEMFF 246
            +YG LAA QDAD A+L G L++D  HL+KNG  +AP   G TGLVD+ TFFNP++    +++ DL K L KI+AT++VE  F
Sbjct:  195 KYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTF 276          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.610e-18
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFFNPIFAENG----EDEPDLKK 201
            +YG LAA QDAD  +LMG L +D +HLNK+G S+ PNG G TGLVD+TTFFNPI+   G    E EP L+K
Sbjct:  476 KYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEGGVVREVEPTLEK 546          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.970e-18
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    4 YGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVD-DTTFFNPIFAENGEDEP-DLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLN 309
            +G +AA ++    +L G L +DC+HLN NG +  PNG G++GLV  D+  ++P+ A  G D+   L+ TL   +ATQ++E++++S  NP+YKF V+RE+V  L+
Sbjct:  150 HGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEVWWVSIGNPKYKFCVYREAVRGLS 253          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.270e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   43 ELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTFF-NPIFAENGEDEP-DLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSLN 309
            +L+G L +D +HLN+N     PNG G+ GLVD  +FF +P+ A  G DE   L+KTL   +ATQ++E+F++S  NP+YKF V+RE+V  L+
Sbjct:  378 DLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEVFWVSIGNPKYKFCVYREAVRGLS 468          
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.940e-16
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 YGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVD-DTTFFNPIFAENG-EDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVGSL 306
            YG +AA  +    +L G L +D +HLN NG    PNG G+ GLVD D+   +P+    G  D   L++TL   +ATQ++E+F++S  N +YKF V+RE+V  L
Sbjct:   74 YGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KVF4_9PHAE3.590e-3762.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI4.930e-3762.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE1.310e-3560.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R1_ECTSI1.200e-3459.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVM8_ECTSI1.960e-2052.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2I2_ECTSI3.610e-1859.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z3_9PHAE6.970e-1841.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE6.270e-1747.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQL9_9PHAE2.940e-1641.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:71133..71785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons2
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.8362098-CDS-P-littoralis_Contig808:71133..712141680791655.8362098-CDS-P-littoralis_Contig808:71133..71214Pylaiella littoralis U1_48CDSP-littoralis_Contig808 71134..71214 -
1680791655.8459053-CDS-P-littoralis_Contig808:71548..717851680791655.8459053-CDS-P-littoralis_Contig808:71548..71785Pylaiella littoralis U1_48CDSP-littoralis_Contig808 71549..71785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.22.1prot_P-littoralis_Contig808.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 71134..71785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.22.1

>prot_P-littoralis_Contig808.22.1 ID=prot_P-littoralis_Contig808.22.1|Name=mRNA_P-littoralis_Contig808.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
RYGDLAAVQDADAAELMGSLAFDCVHLNKNGLSYAPNGAGLTGLVDDTTF
FNPIFAENGEDEPDLKKTLGKIIATQHVEMFFISEANPEYKFAVWRESVG
SLNTDY
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mRNA from alignment at P-littoralis_Contig808:71133..71785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.22.1 ID=mRNA_P-littoralis_Contig808.22.1|Name=mRNA_P-littoralis_Contig808.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=653bp|location=Sequence derived from alignment at P-littoralis_Contig808:71133..71785- (Pylaiella littoralis U1_48)
AGGTATGGGGACCTCGCCGCCGTGCAAGACGCGGATGCGGCCGAACTCAT GGGTTCTTTGGCATTTGACTGTGTCCACCTCAACAAGAACGGGCTCAGCT ACGCACCGAACGGAGCGGGGTTGACGGGCCTTGTGGACGACACCACGTTC TTCAATCCAATCTTCGCGGAGAACGGGGAGGATGAACCGGATTTGAAGAA GACCCTGGGCAAGATCATCGCCACGCAACACGTTGAGGTGATGTTTGATT TTGGGTAAGGGTTAGCGTGTGACCACGGCAACTGGCCGTGTACGTTGATC AGTACGGACAAAGGGGGTGCTGGATGGAGATACCGGTTTAGGTTTTTAGT GTGAGGACAACAATACCACAATTCAAACGTTGATTTGAAGCTGTGGTGCG TTATCGGCGTCGGCCAGCAAAGGCTCAGCATTGTATTCGTGTCGACAGAT AAGTATCCTCATGTACCCCGTCATAAACCTCACATGGCAGAGTGACCATC GAACGTAACCCCTCTATCACCTCGTTAACACGGTGGGTTCCCCCTCCTTC CATCCCGGCGCGAAACATTAGATGTTCTTCATCAGTGAGGCCAACCCGGA GTACAAGTTTGCCGTGTGGCGCGAATCCGTCGGGTCTCTCAACACGGACT ACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:71133..71785-

>mRNA_P-littoralis_Contig808.22.1 ID=mRNA_P-littoralis_Contig808.22.1|Name=mRNA_P-littoralis_Contig808.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig808:71133..71785- (Pylaiella littoralis U1_48)
AGGTATGGGGACCTCGCCGCCGTGCAAGACGCGGATGCGGCCGAACTCAT
GGGTTCTTTGGCATTTGACTGTGTCCACCTCAACAAGAACGGGCTCAGCT
ACGCACCGAACGGAGCGGGGTTGACGGGCCTTGTGGACGACACCACGTTC
TTCAATCCAATCTTCGCGGAGAACGGGGAGGATGAACCGGATTTGAAGAA
GACCCTGGGCAAGATCATCGCCACGCAACACGTTGAGATGTTCTTCATCA
GTGAGGCCAACCCGGAGTACAAGTTTGCCGTGTGGCGCGAATCCGTCGGG
TCTCTCAACACGGACTAC
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