mRNA_P-littoralis_Contig808.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.19.1
Unique NamemRNA_P-littoralis_Contig808.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.19.1 vs. uniprot
Match: A0A6H5K7B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.740e-21
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:  208 LLDYLDEYVGGFRCDSGEGAGPNVTDIGLAGGRGXXXXXXNLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRPIVRDLSLSILDGAGASTGGDS 513
            LLD+L+ +V GFR +   GAGPNVT  GLA    XXXXX N GE NT TG GEMASA  D T  E   ++G +HDDFLSRPI  D+SLS L+GAG S+G  S
Sbjct:  120 LLDHLETFVCGFRQEPVGGAGPNVTGTGLAXXXXXXXXXENAGEGNTLTGSGEMASAGGDLTTEEVPTQDGMDHDDFLSRPIAMDISLSALEGAGVSSGSGS 221
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7B4_9PHAE1.740e-2158.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:66709..67535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size517
Hectar predicted targeting categoryother localisation
Exons2
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.749572-CDS-P-littoralis_Contig808:66708..668101680791655.749572-CDS-P-littoralis_Contig808:66708..66810Pylaiella littoralis U1_48CDSP-littoralis_Contig808 66709..66810 +
1680791655.76406-CDS-P-littoralis_Contig808:67121..675351680791655.76406-CDS-P-littoralis_Contig808:67121..67535Pylaiella littoralis U1_48CDSP-littoralis_Contig808 67122..67535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.19.1prot_P-littoralis_Contig808.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 66709..67535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.19.1

>prot_P-littoralis_Contig808.19.1 ID=prot_P-littoralis_Contig808.19.1|Name=mRNA_P-littoralis_Contig808.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
TTPVCWRQGSRQRGRRLHCTTHAASSITWRRWVDPPRCCRSCTTSSWKSR
KMPSPSSSSTRVKNIWLQILLDYLDEYVGGFRCDSGEGAGPNVTDIGLAG
GRGGGRGGENLGESNTSTGGGEMASASCDSTRAEESVEEGREHDDFLSRP
IVRDLSLSILDGAGASTGGDS*
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mRNA from alignment at P-littoralis_Contig808:66709..67535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.19.1 ID=mRNA_P-littoralis_Contig808.19.1|Name=mRNA_P-littoralis_Contig808.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=827bp|location=Sequence derived from alignment at P-littoralis_Contig808:66709..67535+ (Pylaiella littoralis U1_48)
ACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATT
GCATTGCACTACCCATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTG
ATGCGGTGGTCAATAGGAAGTGAGGAAGACATACCAGACGAAATTTGCCC
AAGGATTTCAATCTCCTTTCCGCAGCCGTAGTTGACGAAGACATAAACTC
CATCCTCCCTCGGTACGTTACAGCGCTGTGTATTTTGTATCATCGGGGTA
CGCTATCTTTCTGATTCCTTGTGTGTTGGAGCAATCATCGCTCCGAGCGC
TTAGTTTTGGAGACAACCATTCTGATTTTCTCTTCTATAGCTTGGACTCG
ACGGCCACGTAGCTGAGGCACCCTCCCCGTGCCCGCGCTCCTCTCCTCGA
ACCGCTCCCCGCCCCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGT
GGAAGAGCAGAAAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAA
AATATCTGGTTGCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGG
GTTCAGATGTGACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCG
GGCTAGCAGGGGGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAG
AGCAACACCTCGACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTC
GACGAGGGCGGAAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTC
TATCCCGACCGATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCG
GGTGCGTCTACCGGGGGTGATTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:66709..67535+

>mRNA_P-littoralis_Contig808.19.1 ID=mRNA_P-littoralis_Contig808.19.1|Name=mRNA_P-littoralis_Contig808.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig808:66709..67535+ (Pylaiella littoralis U1_48)
ACGACCCCAGTGTGTTGGAGGCAGGGTTCAAGACAGCGCGGGAGGAGATT
GCATTGCACTACCCATGCTGCATCATCAATCACGTGGAGGAGGTGGGTTG
ATCCCCCCCGTTGCTGCAGGAGTTGTACAACTTCTTCGTGGAAGAGCAGA
AAAATGCCATCGCCATCAAGCTCGAGTACCCGAGTCAAAAATATCTGGTT
GCAAATCCTACTCGATTACCTCGACGAGTATGTGGGCGGGTTCAGATGTG
ACTCGGGCGAAGGGGCAGGCCCCAACGTGACCGACATCGGGCTAGCAGGG
GGTCGTGGCGGGGGGCGTGGTGGTGAGAACCTGGGTGAGAGCAACACCTC
GACAGGTGGTGGTGAGATGGCCTCTGCCAGTTGTGATTCGACGAGGGCGG
AAGAATCTGTGGAGGAGGGGAGGGAACACGACGATTTTCTATCCCGACCG
ATTGTAAGGGATTTGTCGCTGTCGATTTTGGACGGGGCGGGTGCGTCTAC
CGGGGGTGATTCGTGA
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