mRNA_P-littoralis_Contig808.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.18.1
Unique NamemRNA_P-littoralis_Contig808.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig808.18.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 5.780e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   37 FEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNGRLDWLGPLWAEVKGLPPT 228
            F D+ +    N+ A+ +   +  GL GDT+R V+ V +RGDALFNGRLDWLG LWA VKGL PT
Sbjct:   92 FGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPT 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE5.780e-1454.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:66128..66569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.6768303-UTR-P-littoralis_Contig808:66127..661511680791655.6768303-UTR-P-littoralis_Contig808:66127..66151Pylaiella littoralis U1_48UTRP-littoralis_Contig808 66128..66151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.6889234-CDS-P-littoralis_Contig808:66151..661781680791655.6889234-CDS-P-littoralis_Contig808:66151..66178Pylaiella littoralis U1_48CDSP-littoralis_Contig808 66152..66178 +
1680791655.714342-CDS-P-littoralis_Contig808:66389..665691680791655.714342-CDS-P-littoralis_Contig808:66389..66569Pylaiella littoralis U1_48CDSP-littoralis_Contig808 66390..66569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.18.1prot_P-littoralis_Contig808.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 66152..66569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.18.1

>prot_P-littoralis_Contig808.18.1 ID=prot_P-littoralis_Contig808.18.1|Name=mRNA_P-littoralis_Contig808.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MRGAFEDVPNAGKVNELAQNIANHIEDGLRGDTDRAVSVVLERGDALFNG
RLDWLGPLWAEVKGLPPTT
back to top

mRNA from alignment at P-littoralis_Contig808:66128..66569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.18.1 ID=mRNA_P-littoralis_Contig808.18.1|Name=mRNA_P-littoralis_Contig808.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=442bp|location=Sequence derived from alignment at P-littoralis_Contig808:66128..66569+ (Pylaiella littoralis U1_48)
ACCGACGAGGCGGCTGTCCAATACATGCGTGGTGCTTTCGAGGATGTTCC
GGTGAGAATGGCAGTGCATATTGTTGCCTGCTCGCACATTTCAGACATCA
TGCAGCCAATGTTTCCTTTTGGTGTGACCTCGCATAGTCAGACTGGCACT
TGTTGTTTCACTTGTGTTTCATCACCATCGCAACGAGAGCCTGTTTGGGA
TGATATTTTCAATCGCTTTCATCTTTTGTTTGTCCGCGGCCGTGTGGTTG
ACGATGAAGCAGAATGCTGGCAAGGTCAACGAGCTGGCCCAGAACATTGC
GAACCATATCGAGGACGGTCTTCGCGGGGACACAGATCGTGCCGTGTCGG
TGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTC
GGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig808:66128..66569+

>mRNA_P-littoralis_Contig808.18.1 ID=mRNA_P-littoralis_Contig808.18.1|Name=mRNA_P-littoralis_Contig808.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig808:66128..66569+ (Pylaiella littoralis U1_48)
ATGCGTGGTGCTTTCGAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCT
GGCCCAGAACATTGCGAACCATATCGAGGACGGTCTTCGCGGGGACACAG
ATCGTGCCGTGTCGGTGGTGCTTGAGAGAGGGGACGCCCTCTTCAACGGG
CGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCC
TACAACG
back to top