mRNA_P-littoralis_Contig12.53.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.53.2
Unique NamemRNA_P-littoralis_Contig12.53.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: D8LAV3_ECTSI (Methylase-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV3_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.470e-138
Identity = 293/475 (61.68%), Postives = 320/475 (67.37%), Query Frame = 1 
Query:   70 CFGGGSRAFPGSKALQACLLMMTFLASPSKAFLPALSSASAVVRHNLRLATSTXXXXXTRYSPRNDSNDVARQPNKASWRSLASLYAT-TDGAKDAAMXXXXXXXXXXXXXXXDAGAAAAGGDAREVQDTVAAARAAARNAMESLRRDSRGLGGMRVADAEEAFRFRQDAVTSPARSAVQAALSAVAGAQTAAPAATAVSSTAAQDAIGMVQAALGRRDSAAAEDGGVVTSEVAPLAAATADSPSPLDDDRGCAGNDARSPGGDGSDEMQSKKEPESAVWSRHNPAASHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYKL 1491
            C GGG  A  GSK LQAC+ M  FL SPS AFLPA+SSA  +VRH  R A+++      R   + ++   A Q      RSL SL A  TDGAKDAA+  XXXXXXXXXXXXX                            MESLRRD    GG  + D       +QD VTS ARSAV                        AQDAIGMVQAAL RRDSA  E G   +SE  P+AA TA   S  D      G +    GGDG+      KEPESA WSR+NPAASH HMAHLLWRQVAGPGDTVLDCTAGNGHDSL L K VALKDG+GSLYVMDVQERA+EATRERLRSELGELALKRSTLINGNFREMP ELEP SVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAK +VKHGGMISVMLY+GHAEG+RET+AV  YAAGLA +QWRVF HERINR DSP+LLT++KL
Sbjct:    8 CCGGGGSA--GSKTLQACVAM-AFLISPSTAFLPAISSA-VIVRHIRRTASASSISASHR---KREATITASQ------RSLVSLSAAGTDGAKDAAVRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXMESLRRDPGTFGGGGLGDEA----VQQDEVTSQARSAVXXXXXXXXXXXXXXXXXXXXXXXXAQDAIGMVQAALDRRDSATVELG-AESSEDTPVAAETAVLTSRGDGSVSDGGEE----GGDGT------KEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYVMDVQERAIEATRERLRSELGELALKRSTLINGNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAAGLAHSQWRVFMHERINRADSPELLTIFKL 451
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A6H5JPN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN0_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 6.420e-125
Identity = 285/489 (58.28%), Postives = 315/489 (64.42%), Query Frame = 1 
Query:  133 MTFLASPSKAFLPALSSASAVVRHNLRLATSTXXXXXTRYSPRNDSNDVARQPNKASWRSLASLYAT-TDGAKDAAMXXXXXXXXXXXXXXXDAGAAAAGGDAREVQDTVAAARAAARNAMESLRRDSRGLGG--------------------------------MRVADAEEAFRFRQ---DAVTSPARSAVQAALSAVAGAQTAAPAATAVSSTAAQDAIGMVQAALGRRDSAAAEDGGVVTSEVAPLAAATADSPSPLDDDRGCAGNDARSPGGDGSDEMQSKKEPESAVWSRHNPAASHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYKL 1491
            M FL SPS  FLPA+SS S +VRH  R A++       R   R ++   A Q      RSL SL A  +DGAKD   XXXXXXXXXXXXXXX            EVQ T+AAAR  AR+AMESLRRD    GG                                + V   +E +  +    D VTS ARSAVQA                      AQDAIGMVQAAL RRDSAA E G   +SE   +AA  A   S     RG  G ++    GDG+      KEPESA WSR+NPAASH HMAHLLWRQVAGPGDTVLDCTAGNGHDSL L K VALKDG+GSLY+MD  ERA+EATRERLRSELGELALKRSTLIN NFREMP ELEP SVQLVVYNLGWLPGGDKSITT LEDTLESIEAAK +VKHGGMISVMLY+GHAEG+RET+AV  YAA LA +QWRVF HERINR  SP+LLT++KL
Sbjct:    1 MAFLISPSTPFLPAISSTS-IVRHVRRTASTLSISVSHR---RREATITASQ------RSLVSLSAAGSDGAKDXXXXXXXXXXXXXXXXXXXXXXXX---XRDEVQVTIAAARXXARSAMESLRRDPGTFGGGGLGDEAVQQASCALAYFLIVVLPVDQVEQSDLDVVGIQETWELKDGDVDEVTSQARSAVQAXXXXXXXXXXXXXXXXXXXXXXAQDAIGMVQAALDRRDSAAVELG-AKSSEDTQVAAEAAVLTS-----RG--GEES----GDGT------KEPESARWSRNNPAASHSHMAHLLWRQVAGPGDTVLDCTAGNGHDSLELAKIVALKDGVGSLYIMD--ERAIEATRERLRSELGELALKRSTLINSNFREMPAELEPLSVQLVVYNLGWLPGGDKSITTTLEDTLESIEAAKRVVKHGGMISVMLYRGHAEGKRETEAVRDYAASLAHSQWRVFMHERINRAGSPELLTIFKL 456
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A0G4GWR6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWR6_VITBC)

HSP 1 Score: 171 bits (432), Expect = 1.170e-46
Identity = 90/204 (44.12%), Postives = 127/204 (62.25%), Query Frame = 1 
Query:  892 ESAVWSRHNPAASHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDG----LGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYKL 1491
            +++ WS  +P ASH  ++ LLW+Q   PG   +D T GNG DSL L   +   DG       L  +DVQ  A+ +TR  L  EL    L+R  L + +    P  +   SV ++VYNLG+LPGGDKS+TT+ + T+ S+ AA  L+  GG+ISVMLY+GH EG  E+D V+ +A+ L  ++WRVF HE +NRP SP L+T+Y+L
Sbjct:    4 DASWWS--SPLASHLPLSRLLWKQGLKPGGRAVDATCGNGKDSLFLSTLIFPSDGDDETEAELICIDVQREAIGSTRSLLAEELRPPHLERIRLFHQSHERFPDCIADNSVDVIVYNLGYLPGGDKSVTTRHDTTITSLTAALKLIVKGGLISVMLYRGHPEGTVESDGVISWASQLPADEWRVFLHEPLNRPTSPALMTLYRL 205
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A836C882_9STRA (Putative rRNA methylase-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C882_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.050e-45
Identity = 90/198 (45.45%), Postives = 120/198 (60.61%), Query Frame = 1 
Query:  940 MAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGL---------GSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEP----ESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDS-PQLLTMYKL 1491
            +AHLLW+    PGD V+DCTAG G+DSL L + +     L         G L  +DVQE A+  T+ RL+  L   A++R +++  +F E+PP  EP     SV LV YNLG+LPG DKS+ + ++DTL+S+  A  LVK GG ISV  Y GH EG  E  AV  + AGLA  +WRVF H R+N P+  P L+  YK+
Sbjct:    2 LAHLLWKSAVSPGDIVIDCTAGKGYDSLVLARLLFPDSALDGEAAAAAQGQLVCIDVQESAVAQTQARLQQALPPQAMQRISVLQQSFCELPPACEPPIAERSVALVAYNLGFLPGSDKSVCSTVQDTLDSLNKASKLVKLGGAISVTCYPGHEEGAAEVAAVKEWGAGLATREWRVFEHSRLNSPEGVPLLVVAYKV 199
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: D6YVK4_WADCW (Putative rRNA methylase n=2 Tax=Waddlia chondrophila TaxID=71667 RepID=D6YVK4_WADCW)

HSP 1 Score: 156 bits (394), Expect = 3.730e-41
Identity = 78/187 (41.71%), Postives = 117/187 (62.57%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYK 1488
            SH  +AH  W+ +  PGD V+D T GNGHD+L L + +AL    G LY  D+Q+ A+ +T++ L  +L +  ++R   ++G     P E++P SV+L  YNLG+LPGGDK+ TT+ E TL+SI+ A   V+ GGM+S+  Y GH EG+RE   +L +A+ L   +W +  H  +NR  +P LL + K
Sbjct:   10 SHIDLAHKHWKSLVKPGDIVIDATCGNGHDTLVLAQ-LALTVESGKLYACDLQKDAINSTKQSLLEKLEKKIVERIFFVHGCHSSFPDEIQPNSVRLAAYNLGYLPGGDKAKTTQTETTLQSIQKALEAVQDGGMVSITCYPGHTEGKREEKHILEFASKLDPKRWSLCHHRWLNRSKAPSLLLIQK 195
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A1M3CW32_9CHLA (rRNA methyltransferase n=1 Tax=Chlamydiales bacterium 38-26 TaxID=1895743 RepID=A0A1M3CW32_9CHLA)

HSP 1 Score: 155 bits (393), Expect = 4.490e-41
Identity = 82/188 (43.62%), Postives = 120/188 (63.83%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGG-DKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYK 1488
            SH  +AH  W  +   GD V+D T GNG D+L L + ++L    G LY +D+Q+RA+E T + L+  L    L R +LIN    + P E+ PESV+L+ YNLG+LPGG +K++TT++E TLES++ A  L++ GG +S+ LY GH EG+RE + +L +A  L+  QW    H+ INR  SP LL + +
Sbjct:   11 SHLDVAHSYWNTLVKKGDVVIDATCGNGQDTLILAQ-LSLTPTQGYLYGIDIQQRAVEITHQYLKQHLAPAFLARISLINQCHSDFPQEISPESVRLITYNLGYLPGGGNKNLTTRVETTLESLKKALFLIQKGGAVSITLYPGHPEGQREEEKILLWAKELSPFQWNCCHHQWINRFKSPSLLLIQR 197
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A5C7WT25_9PROT (Methyltransferase domain-containing protein n=1 Tax=Nitrosomonas sp. TaxID=42353 RepID=A0A5C7WT25_9PROT)

HSP 1 Score: 154 bits (388), Expect = 2.230e-40
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDS-PQLLTMYKL 1491
            SH  +AH  W+Q+   GDTV+D T GNGHD+L L + V + D  G +Y +D+Q  A++ +R+ L  EL    L+R  L+       P  +   SV+L+VYNLG+LPGG+KS+TT++E TL+S+ AA  L+  GG +S+ LY GH EG  E   VL     L+ ++W    H+ INRP S P LL + KL
Sbjct:    9 SHLDLAHTYWKQLVSIGDTVIDATCGNGHDTLMLARLV-IDDSAGDVYGLDIQSTAIDNSRQLLHQELPTHHLQRIHLLQQCHSTFPDMITAASVKLIVYNLGYLPGGNKSLTTRVETTLQSLNAAVKLLSPGGCLSITLYPGHPEGAIEESQVLPLIRSLSSSEWSCCHHQWINRPISAPSLLLVQKL 196
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BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A7D5RST9_9BACT (rRNA methyltransferase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7D5RST9_9BACT)

HSP 1 Score: 152 bits (383), Expect = 1.320e-39
Identity = 84/188 (44.68%), Postives = 115/188 (61.17%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGG-DKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYK 1488
            SH  +AH  W +    GD V+D T GNG D+L L K + L +  G LY +D+  +A+E T++  ++ L  L  +R   I G     P E+ PESV+LVVYNLG+LPGG DK+ TTK+E TL+S++ A  LV+ GGMIS+ LY GH EGERE   +L +   L   +W    H+ +NR  SP LL + K
Sbjct:   10 SHLDLAHSYWEKFVQTGDHVIDATCGNGQDTLFLAK-LCLNESSGELYAIDILPKAVELTKKFXKTLLPPLYYRRIHYIPGCHSTFPEEILPESVKLVVYNLGYLPGGGDKTKTTKVETTLQSLQHALELVQKGGMISLTLYPGHPEGEREESHILTFIKNLDPLKWNCCHHQWLNRHKSPSLLLLQK 196
[Close]
BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: A0A2H9SWP1_9BACT (rRNA methyltransferase n=1 Tax=Parachlamydia sp. TaxID=2052048 RepID=A0A2H9SWP1_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.670e-38
Identity = 82/187 (43.85%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYK 1488
            SH  +AH  W  +  PGDTV+D T GNGHD+L L + +AL    G +  +D+QE++L AT  RL   L    L+R  LI       P ++ P+SV+L+VYNLG+LP GDKS TT+ + T+ES++AA PL+  GG+I V  Y GH EGE+E  AVL +  GL  ++W     + +NR  +P LL + +
Sbjct:   10 SHLDLAHQYWTILVRPGDTVIDATCGNGHDTLKLAQ-LALHSDQGQVIGIDLQEQSLLATNARLMEHLSPDLLRRVQLICSCHSSFP-DIPPKSVRLIVYNLGYLPKGDKSRTTRAKTTIESLQAAFPLLMPGGVICVTCYPGHEEGEKEEKAVLDFVRGLDPHEWCCTYQQWMNRQKAPGLLLIQR 194
[Close]
BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Match: UPI001BC91B08 (methyltransferase domain-containing protein n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC91B08)

HSP 1 Score: 148 bits (373), Expect = 3.740e-38
Identity = 83/191 (43.46%), Postives = 113/191 (59.16%), Query Frame = 1 
Query:  928 SHRHMAHLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERALEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLPGGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLGYAAGLALNQWRVFTHERINRPDSPQLLTMYKL*LT 1500
            SH  +AH  W+++  PGDTV+D T GNGHD+L L K V L    G +  MDVQ +A++ T+ERL  E     ++R  L        P +  P  V+L+VYNLG+LP GDKS+TT +  TL S++AA  ++  GG IS+  Y GHAEG+RE  A+L +  GL   +W       INR  +P LL + K  LT
Sbjct:   10 SHLDVAHHYWKKLVQPGDTVIDATCGNGHDTLVLAKLV-LNSPSGKVIGMDVQSQAIKNTQERLAKEFSANQMQRIHLHCACHSTFPVQA-PHVVKLIVYNLGYLPNGDKSLTTCVNTTLLSLQAALSIITPGGAISLTCYPGHAEGKREEQAILSFVRGLQPQEWSCSYQTWINRHQAPGLLFIQKANLT 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.53.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV3_ECTSI1.470e-13861.68Methylase-related n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JPN0_9PHAE6.420e-12558.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GWR6_VITBC1.170e-4644.12Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A836C882_9STRA3.050e-4545.45Putative rRNA methylase-domain-containing protein ... [more]
D6YVK4_WADCW3.730e-4141.71Putative rRNA methylase n=2 Tax=Waddlia chondrophi... [more]
A0A1M3CW32_9CHLA4.490e-4143.62rRNA methyltransferase n=1 Tax=Chlamydiales bacter... [more]
A0A5C7WT25_9PROT2.230e-4043.39Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7D5RST9_9BACT1.320e-3944.68rRNA methyltransferase n=1 Tax=Parachlamydiaceae b... [more]
A0A2H9SWP1_9BACT1.670e-3843.85rRNA methyltransferase n=1 Tax=Parachlamydia sp. T... [more]
UPI001BC91B083.740e-3843.46methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:244592..250968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LAV3
PFAMsrRNA_methylase
Model size1547
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.82e-140
EggNOG OGsCOG0500@1|root,2QQ3B@2759|Eukaryota
Ec32 ortholog descriptionmethylase-related
Ec32 orthologEc-27_006280.1
DescriptionPutative rRNA methylase
Cds size1449
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.53.2prot_P-littoralis_Contig12.53.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 244645..250923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789507.046532-UTR-P-littoralis_Contig12:244591..2446441680789507.046532-UTR-P-littoralis_Contig12:244591..244644Pylaiella littoralis U1_48UTRP-littoralis_Contig12 244592..244644 -
1680789507.1366556-UTR-P-littoralis_Contig12:250923..2509681680789507.1366556-UTR-P-littoralis_Contig12:250923..250968Pylaiella littoralis U1_48UTRP-littoralis_Contig12 250924..250968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789507.0600162-CDS-P-littoralis_Contig12:244644..2447731680789507.0600162-CDS-P-littoralis_Contig12:244644..244773Pylaiella littoralis U1_48CDSP-littoralis_Contig12 244645..244773 -
1680789507.072147-CDS-P-littoralis_Contig12:245281..2454231680789507.072147-CDS-P-littoralis_Contig12:245281..245423Pylaiella littoralis U1_48CDSP-littoralis_Contig12 245282..245423 -
1680789507.0800796-CDS-P-littoralis_Contig12:245802..2459391680789507.0800796-CDS-P-littoralis_Contig12:245802..245939Pylaiella littoralis U1_48CDSP-littoralis_Contig12 245803..245939 -
1680789507.0909936-CDS-P-littoralis_Contig12:246241..2463711680789507.0909936-CDS-P-littoralis_Contig12:246241..246371Pylaiella littoralis U1_48CDSP-littoralis_Contig12 246242..246371 -
1680789507.1048107-CDS-P-littoralis_Contig12:247464..2478501680789507.1048107-CDS-P-littoralis_Contig12:247464..247850Pylaiella littoralis U1_48CDSP-littoralis_Contig12 247465..247850 -
1680789507.1136596-CDS-P-littoralis_Contig12:248263..2487251680789507.1136596-CDS-P-littoralis_Contig12:248263..248725Pylaiella littoralis U1_48CDSP-littoralis_Contig12 248264..248725 -
1680789507.1272058-CDS-P-littoralis_Contig12:250860..2509231680789507.1272058-CDS-P-littoralis_Contig12:250860..250923Pylaiella littoralis U1_48CDSP-littoralis_Contig12 250861..250923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.53.2

>prot_P-littoralis_Contig12.53.2 ID=prot_P-littoralis_Contig12.53.2|Name=mRNA_P-littoralis_Contig12.53.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=483bp
MTPYCDPSCFGGGSRAFPGSKALQACLLMMTFLASPSKAFLPALSSASAV
VRHNLRLATSTSTSTSTRYSPRNDSNDVARQPNKASWRSLASLYATTDGA
KDAAMAAVQAAEEALDRAAEDAGAAAAGGDAREVQDTVAAARAAARNAME
SLRRDSRGLGGMRVADAEEAFRFRQDAVTSPARSAVQAALSAVAGAQTAA
PAATAVSSTAAQDAIGMVQAALGRRDSAAAEDGGVVTSEVAPLAAATADS
PSPLDDDRGCAGNDARSPGGDGSDEMQSKKEPESAVWSRHNPAASHRHMA
HLLWRQVAGPGDTVLDCTAGNGHDSLALGKAVALKDGLGSLYVMDVQERA
LEATRERLRSELGELALKRSTLINGNFREMPPELEPESVQLVVYNLGWLP
GGDKSITTKLEDTLESIEAAKPLVKHGGMISVMLYKGHAEGERETDAVLG
YAAGLALNQWRVFTHERINRPDSPQLLTMYKL*
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mRNA from alignment at P-littoralis_Contig12:244592..250968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.53.2 ID=mRNA_P-littoralis_Contig12.53.2|Name=mRNA_P-littoralis_Contig12.53.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6377bp|location=Sequence derived from alignment at P-littoralis_Contig12:244592..250968- (Pylaiella littoralis U1_48)
AGTGTCTGCTCTCGTCTCTCCTCCGCTCAGAGCAGTCAGACCCTTATGAC
CCCCTACTGCGATCCTTCCTGCTTTGGTGGTGGTAGTCGGGCCTTTCCTG
GATCGAAGGTGTGAGACGACAAATTATGTAGCGCTTTCTGATTTCTGATC
ACCTGACTACAGAGAGCAACATACATTTGAATATTTGAATGTCTTTCGAT
CTGACTCGATCCCCCCTTCAGCCGACACGTACACCCCGTACGCACCCAAA
TGGATGTCTACACCTGGTGTGAAGGCATATCAAATTTTTGTCTACATGCC
GACCGCACCACTGCAGCAAAACAGCAGTGCTTATCGCTCCGAGAGGTTCA
ATACTTTCCATGATTCCTTTGGTTGATTGCATGTGCTGCTGCCTACGTAT
AGAAAAATCCCCATTTTTTTTTAATACTTTAGCGACAAAAGTTGTCGTTG
CACGGAGCCCCCGTTGTCGATTTTCCTGTGACACATGCACATCAATCTGC
TCCTTCTCGAGCTGTAGTGCTGATCCAAAGTTATACCAATGGTTTTTGGG
TAGTGCATCGACCAAGGTACACACTATGTGAGTTTCAGCCCATTTGGATT
TTCTTCCAGGTCACACCTTTGATCTAAAGTTTTTTTGGAGCACCAAACGA
TGAAATTTTGGCTAAAAGTTTTGGAGGTAGACATTTTGTTGTTCTCGTTT
AAGGAATGTTCAACCTGTAACCACTGGAGTTTAGACTGGTTTTGGTCGGT
TTTAGGCAACTTTTGCAAGCTCATTGTCAGCGCTGTGGTGCTGATCCTAA
ATTTCGCCAACTTTTTTTGGGTAGTACACCAAGGTGTACACCCTCCGAGT
TTCAGCCCATTTGGTTGTTCTACCAGGTCACAACCTTGGCGCAAAGTTTG
TCCCCCGAGAACTAAAAACGAGCTCCAGACGCACAGAAAAACGGCTTGCT
TCCAGTTGCGATGTCGCAGCATATGTGCAGTTTGGAGCAAAACCGTAGCA
TATAAGCTATTGGAGAAGGTAGAACACGACCCTCTTGAGACCTCCTGTCA
ATATCCTAGCAAGCCGGGGTCTGTGTGAGGAGCACTGCCGGCGACAAAGG
TCATGACCCTGAGTGGTGTTAACAGCACAAATTCACAAATCTGAGAGGGG
CTCAGGGTTTCGTCAAGTGGTACCCGCCCAAAGATTTTGTCGGTATTAAA
AAAAAAAATCACCCAAAGCAGCACATGATCTGTTGCGTGCTGTTCAAAAA
ATACTCATCACGCTCTCCCTCTCTCTCTCCCTGCATTCTGATGACACAGA
AAAGACCGCGGATACCGCCTTAGATACAATAGATGTTACATACTTCTATC
GTGGTGCTGCAGTTGTACCGGATACTTCGACTTCTGCTGTACCGCTGTTG
CGAAGCTGCTGGCTGTAGACCTGCGTGGCACGTGTGCTTCATCTCAAACA
GTAAACGGAGACTATGCGCTCGTAGGTCAGAGCTTTGTTGCGTCGAGTAG
GACCGGAGGGGGCGGGCGGTACGGTCCTGTCTCTCAACGAAAAAAAATCA
CTTGGCACCCGGGTCATTGGAGGCCCAATTTGGACAATCCTTCGTATCAA
GTGCAGCTGTGCTCGTACTGCTGTCTTGCGCTGCTGTACCGGTAAGCTTT
TTGCAAAAAAGTACCGTTGTTGTGAAGACAGCAGTACCGTTAAGTTTTTT
GCCAAAAAGTACCGATGTTGTGATGTCGTTTTGACGCCAACTGTCGGGTT
GGGAAAATGCAGCTGCTCTGCGTTCCAAATAAAGCAATAAACATGGGGAC
ACGCAAGGTCCTTGTTTGCAATTTGCGATCTCGTCGTGTGCATGTGTGTG
TTACGGTGTGAGTTTGTGTGTGTGTGCCCCTGATATGCTTATAGCATCAG
CTGCGAAGTTGCGTGCGTGCGTGTTGTCGGTCTTTCCGGACAAAAATGGA
TATTGACATTTTTTTTGCAGGCAGAAGCTAACCCTGTGGGTGGATACGAA
AGTCGAAGACAAATCCATTCCAATTACTGAAGCTTTCCCATCGGGGCGTC
ACAACGTCTGCCAGAACAGGCCCTTATTCCGCTTCATGACTTGGGCGCAC
ATTCGGCGGTCCTATTGCTGTAACTGCCGCAAAGACGCACTGCTGCCCAC
TGACATGTTGTCTGGCCTAACGTTTGTCTTCAATATGCTGACGAAGATCT
GATCCCAACCGCCCCGAAACAACGACCACGAATCTTCCGCCAGGCCCTTC
AGGCGTGCTTGCTGATGATGACGTTTCTCGCCTCTCCTTCGAAGGCCTTC
CTCCCAGCACTCTCCTCTGCGTCCGCCGTCGTGCGACACAACTTGCGGTT
AGCAACTTCAACATCAACATCAACATCGACCCGATACTCACCCCGAAACG
ACAGCAACGACGTCGCGCGCCAACCAAACAAGGCCTCGTGGCGATCGCTT
GCGTCTCTGTATGCCACCACCGACGGCGCAAAAGATGCGGCCATGGCGGC
CGTTCAGGCGGCCGAGGAGGCGTTAGACAGAGCGGCAGAGGACGCGGGGG
CGGCGGCGGCGGGCGGCGACGCGCGGGAGGTTCAGGACACCGTCGCCGCG
GCACGCGCTGCCGCTCGAAACGCCATGGAGTCGCTGCGGAGAGACTCGAG
GGGGCTTGGTGGGATGAGGGTGGCGGATGCCGAGGAAGCGTTCAGGTTTA
GGCAGGTACGCCGCGTGTTTGGTGGATGCACAGAAAGTGTTTCCCACGTT
TAGGCAGCGTCGTCGGTGCGTTTGTCCTTGCACGTGTAGCTTTGTACTGT
AGTAGTTGTTGGGTTGCTGGGCCGGTCTTTTCGCTTGCCCTCTCGTGGCT
TGTTCGTTGCCGTCATGCCGGGCGGTCCGTGTGCTCTTTCCGTTCGCGCT
GCTGATTGTGTGTGCTGGTTGTGTGTCCACTGTGAGTCCCGATTTCCCAA
ATGAACCCGTTGTTTCGAAACATGAGTCCTTGCAAAGACTTGCACTTCAC
GCAGCACATTATTTTCACCGAAACCTCTCTCACGCATCCATGAAAGTTCA
AACCACCCCCCCAATATTGCTCGCGCCACTTGGTGGGCATTTTTTCGTTG
GAAATCGTCGTGAAACAGGATGCAGTGACGTCACCAGCCCGGTCCGCTGT
GCAAGCAGCTCTGTCGGCGGTCGCCGGAGCCCAAACGGCAGCCCCCGCCG
CGACCGCGGTATCATCTACCGCCGCCCAAGATGCTATCGGTATGGTCCAA
GCGGCGCTTGGCCGGCGAGATTCGGCAGCCGCAGAGGACGGCGGCGTTGT
GACGTCTGAGGTCGCACCCCTTGCCGCCGCTACCGCTGATTCCCCGTCGC
CTCTGGATGATGATCGTGGTTGTGCTGGAAATGACGCTCGGTCGCCAGGC
GGCGATGGCAGCGATGAAATGCAGTCGAAAAAGGAGCCCGAGTCTGCGGT
CTGGAGCCGACACAATCCTGCTGCGTCGCACCGCCACATGGCCCACCTGC
TATGGTGAGGGGGCCGAGAGGTGCGCGACGGCACGCGACGCGCTGCAGCT
GTGAGCGATAATGACACGATACGTATGATGTTGACGGCGGTATGCGGTAT
GATCCCATCACATGCACTTGAGCCATGCTTTCCAGTGCAGCAGTTCTGCA
GGAAGGGCGTTTCGGTTACTGGCGAAGGTGTTGTTCCAAGCCGCTCCTCG
TTCTTTCCTGATGCATTGTCCTCACATTGAGACCTTCTCAACAACTCTGG
CATAGGTCGTGCATTCGAATGCCGGTGACCTGGGATTGTTTTCCCCACAT
AATACCTTGGAGTGTGTAACGCAATTAGTCCGGGAGTAGACGCTTTTCGG
CCCGAATAAAGGTGTCGAGGAGACGGAACAGCAGTCCAACAACTTCTGAG
GGTAAAAACGAATGAAGCACTGCAGAAGAAGTAAAAGGTGGAGACAAATT
CCGGTGTTGATCTTTCTCCTGTGTGGCCGACCCCGGCTGGTGCGCCCAAA
TATATGGGATGACAACGCACACGCCTCTCCTCATTTCCCGAAAGGTGTAG
ACTGACGTCCAGAATAGATAGGATGACAACACACACGCCTCTCCTCATTT
CCCGAAAGGTGTAGACTGACGTCCAGAATAGATAGGATGACAACACGCAC
AGCAGCATACCGGCACACTTTCTGATACATATCATAAGATATCGTAAGTA
ATATGAAAATCCACGTGTTTTTTATTGACCTTCCCCCCGTGTGACCCTGG
GTGATGTACCCACGTATCGAGATACCAGAAGGTGTAGACTGACTTCCAGG
GTCAATGGAATGTCATCACACACACGCCTCCTTTAATTTCCCGAAAGGTG
TAGACTGGCGTCCAGGATATAGATGGGATGACAACATGCGCCACATAGCA
TGCGCACATTAAATTACCGTTTTGACCCCCAAATTTCAATTTTTCGCACT
GATGCAGGACTTCCGTATTCCGCACAGAGGCGAGAGGGTGAGAGGCAGAC
CGACGGCTGTGGCGCAGCAGTGCTGACCGTATATTCCGACGACTGCCCCC
CCGCTCGCACTCATGCATACTTTCATGTGCGTGCCCCCCTATCTCAGGAG
ACAAGTTGCCGGCCCGGGCGACACAGTGCTGGACTGTACAGCCGGAAACG
GTCACGACAGTCTCGCGCTCGGGAAGGCTGTCGCCCTGAAGGACGGGTTG
GGATCGCTGTACGTCATGGATGTCCAGGCGAGCGCTTCAAAGTCATGCTC
GTTTTTTTTTAAGGGAAATGTGAACGTCTGTTTGTGTTTCTTTAGCTTTG
GCGTCGTATGTACGTTCCCGTGGTCGAGGAGTCAAGAATGGTCAAACACC
CCCCTTTTTTTGGCGAAACTGCAGAGAAGAAACTGTCAGACGGTATTCTA
CGTGGCACTTTTGCGCACAGAGCGTGCGTTCTGAATCGTTGTTCTCGCTT
TCTGGAGAATATGGTACATCCATACAACGTTGTTCTGAAAAAAATTACCG
TGCGCGCTCTTCCTCTATTGGGCTTTCAGGAGCGGGCTCTCGAGGCCACC
AGAGAGAGGTTAAGGTCTGAGCTGGGCGAACTGGCCTTGAAACGGTCGAC
ACTTATCAACGGCAACTTCCGCGAGATGCCTCCAGAATTGGAGCCCGAGT
CGGTACAACTAGTCGTGTGAGTGAGGCAGGCCGTCGTTGTTTGATCGCAC
AAAGCATCGAAGAGGGGGGGGGGGGCATGGGCGGTTGGGGGGGTGAGAAG
CGAAGATTGCGTTGGTGCGCTGACCGCTGTCGATGCACTGCAAGCATAAG
GACGAAGCCTTCAGGGTGTATGGTATCGATATTGCGCACATGTTTTGTGT
TTCCTCTCCGGCTCATGATCTGTCGTTCGTAGTGATGTGTGTTATGAACG
CGAGATCGCTACATACCAGCGTACAAGACCGAGGTACCCGATGGCTGTGT
AGTTACCTACCGCCAGCCCGACGCTTCTTCCCTTCATTTATTAATCAAAC
ATATGTTCCCTGCTCCTGCCTCTATTGTACCGCCCGCTGCACCAGGTACA
ACCTGGGGTGGTTACCAGGCGGTGACAAGTCCATCACGACCAAGCTTGAA
GACACGCTGGAGAGCATCGAGGCGGCGAAACCCTTGGTAAAGCACGGCGG
CATGATCAGCGTCATGTTGTACAAGGGCCACGCCGAGGTGAGCAAACATA
AACGAAAGGCGTGGAAGGCTTTTTCGGTGCGCGTCGACTACAGCATGACA
TGAAGTGTTGTTCGCCGCGGCAGCAATGAGGAGCGAGTCACGGCGGGCGG
CGCTGACGGCGCAAACCTTGCTCTCTTCCAGCCCACGGTGTCCAATTGCA
CATCCGTTTCCCCTCGTTCTTGGTCAAACACTCAGCCACAAGTCCACTAC
GTGCCAGTACGAATGGTGCATGTAGCTGGTAGCATGTACCTGATCAATCA
AGTAGAGGGTCGGGGAGATGTTCTTCTGTGGGTACAGCATATTACGGCCT
ACCAGCACTTATTTTCATGAAGGACTGTTTTGGAGAAGAGCAGAGACTTC
ACTGAAACCTCTCCTTTTTCTCCCCCCAACTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTGTCTCGCTTGCGCCACCCCCCCCCTGATTTTTTTC
GTTTGCCCCGCGGTTTTCCCTTCCTCTTTGCTTGTTCGCCTGCAGGGTGA
ACGGGAGACCGATGCCGTGCTCGGGTACGCGGCCGGGTTGGCGCTCAACC
AGTGGCGCGTTTTCACGCACGAGAGGATCAACCGCCCCGATTCTCCCCAG
CTTCTCACCATGTACAAACTCTGACTGACCCTCGCAAATAAATAGAGTTG
TGCTTTTAGCCCGAATCGCCTTTTCTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:244592..250968-

>mRNA_P-littoralis_Contig12.53.2 ID=mRNA_P-littoralis_Contig12.53.2|Name=mRNA_P-littoralis_Contig12.53.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1449bp|location=Sequence derived from alignment at P-littoralis_Contig12:244592..250968- (Pylaiella littoralis U1_48)
ATGACCCCCTACTGCGATCCTTCCTGCTTTGGTGGTGGTAGTCGGGCCTT
TCCTGGATCGAAGGCCCTTCAGGCGTGCTTGCTGATGATGACGTTTCTCG
CCTCTCCTTCGAAGGCCTTCCTCCCAGCACTCTCCTCTGCGTCCGCCGTC
GTGCGACACAACTTGCGGTTAGCAACTTCAACATCAACATCAACATCGAC
CCGATACTCACCCCGAAACGACAGCAACGACGTCGCGCGCCAACCAAACA
AGGCCTCGTGGCGATCGCTTGCGTCTCTGTATGCCACCACCGACGGCGCA
AAAGATGCGGCCATGGCGGCCGTTCAGGCGGCCGAGGAGGCGTTAGACAG
AGCGGCAGAGGACGCGGGGGCGGCGGCGGCGGGCGGCGACGCGCGGGAGG
TTCAGGACACCGTCGCCGCGGCACGCGCTGCCGCTCGAAACGCCATGGAG
TCGCTGCGGAGAGACTCGAGGGGGCTTGGTGGGATGAGGGTGGCGGATGC
CGAGGAAGCGTTCAGGTTTAGGCAGGATGCAGTGACGTCACCAGCCCGGT
CCGCTGTGCAAGCAGCTCTGTCGGCGGTCGCCGGAGCCCAAACGGCAGCC
CCCGCCGCGACCGCGGTATCATCTACCGCCGCCCAAGATGCTATCGGTAT
GGTCCAAGCGGCGCTTGGCCGGCGAGATTCGGCAGCCGCAGAGGACGGCG
GCGTTGTGACGTCTGAGGTCGCACCCCTTGCCGCCGCTACCGCTGATTCC
CCGTCGCCTCTGGATGATGATCGTGGTTGTGCTGGAAATGACGCTCGGTC
GCCAGGCGGCGATGGCAGCGATGAAATGCAGTCGAAAAAGGAGCCCGAGT
CTGCGGTCTGGAGCCGACACAATCCTGCTGCGTCGCACCGCCACATGGCC
CACCTGCTATGGAGACAAGTTGCCGGCCCGGGCGACACAGTGCTGGACTG
TACAGCCGGAAACGGTCACGACAGTCTCGCGCTCGGGAAGGCTGTCGCCC
TGAAGGACGGGTTGGGATCGCTGTACGTCATGGATGTCCAGGAGCGGGCT
CTCGAGGCCACCAGAGAGAGGTTAAGGTCTGAGCTGGGCGAACTGGCCTT
GAAACGGTCGACACTTATCAACGGCAACTTCCGCGAGATGCCTCCAGAAT
TGGAGCCCGAGTCGGTACAACTAGTCGTGTACAACCTGGGGTGGTTACCA
GGCGGTGACAAGTCCATCACGACCAAGCTTGAAGACACGCTGGAGAGCAT
CGAGGCGGCGAAACCCTTGGTAAAGCACGGCGGCATGATCAGCGTCATGT
TGTACAAGGGCCACGCCGAGGGTGAACGGGAGACCGATGCCGTGCTCGGG
TACGCGGCCGGGTTGGCGCTCAACCAGTGGCGCGTTTTCACGCACGAGAG
GATCAACCGCCCCGATTCTCCCCAGCTTCTCACCATGTACAAACTCTGA
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