mRNA_P-littoralis_Contig808.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig808.7.1
Unique NamemRNA_P-littoralis_Contig808.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 204 bits (518), Expect = 7.490e-66
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:   40 PQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            P +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   19 PTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A453LJ39_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LJ39_AEGTS)

HSP 1 Score: 203 bits (517), Expect = 1.520e-65
Identity = 108/126 (85.71%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:    1 HNHNPFS------SLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            HNH P        +L  E  +A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   11 HNHQPPQLPQRQVNLTGEKGEAKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 136
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A1D6IAU4_MAIZE (Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6IAU4_MAIZE)

HSP 1 Score: 203 bits (517), Expect = 1.570e-65
Identity = 106/118 (89.83%), Postives = 108/118 (91.53%), Query Frame = 1 
Query:    7 HNPFSSLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            H P  S     P A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 HPPVRSGGDRQPAAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 137
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 202 bits (515), Expect = 1.660e-65
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:   25 LKFETPQAN--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            L F+TP A   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 LHFQTPSAPPIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A2J6LJW1_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LJW1_LACSA)

HSP 1 Score: 203 bits (516), Expect = 2.720e-65
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:    7 HNPFSSLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            H+ F    FE+ +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 HHHFHLHFFESTKFQMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 143
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A1W0W662_SORBI (Histone H4 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1W0W662_SORBI)

HSP 1 Score: 204 bits (519), Expect = 3.850e-65
Identity = 107/122 (87.70%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 HNHNPFSSLKF--ETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            HNH+P    +     P A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   65 HNHHPLLPNRGGDRRPAAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 186
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: UPI001EEB9003 (histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB9003)

HSP 1 Score: 202 bits (514), Expect = 5.140e-65
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 1 
Query:    4 NHNPFSSLKFETPQA--NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            NH+ FS + ++T +    M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 NHSVFSLVVYQTSETYLKMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 141
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A369S8R6_9METZ (Histone H4 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S8R6_9METZ)

HSP 1 Score: 202 bits (514), Expect = 5.310e-65
Identity = 105/114 (92.11%), Postives = 108/114 (94.74%), Query Frame = 1 
Query:   19 SSLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            SSL FE     MSGRGKGGKGLGKGGAKRHRK+LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   29 SSLIFELRLLKMSGRGKGGKGLGKGGAKRHRKILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 142
[Close]
BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 201 bits (512), Expect = 6.790e-65
Identity = 107/116 (92.24%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   13 PFSSLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            PF S   E  QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   15 PFLSSYSE--QAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128
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BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Match: A0A1J3ENA7_NOCCA (Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENA7_NOCCA)

HSP 1 Score: 201 bits (512), Expect = 7.250e-65
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:   22 SLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 360
            S KF+ P+  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   19 SRKFKFPEK-MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig808.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3L6V663_9STRA7.490e-6698.13Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A453LJ39_AEGTS1.520e-6585.71Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A1D6IAU4_MAIZE1.570e-6589.83Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D... [more]
A0A453N2X0_AEGTS1.660e-6592.98Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
A0A2J6LJW1_LACSA2.720e-6588.98Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A1W0W662_SORBI3.850e-6587.70Histone H4 n=1 Tax=Sorghum bicolor TaxID=4558 RepI... [more]
UPI001EEB90035.140e-6586.78histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35... [more]
A0A369S8R6_9METZ5.310e-6592.11Histone H4 n=1 Tax=Trichoplax sp. H2 TaxID=287889 ... [more]
A0A453FVP7_AEGTS6.790e-6592.24Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=... [more]
A0A1J3ENA7_NOCCA7.250e-6592.92Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig808contigP-littoralis_Contig808:33407..33769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4577.AC212565.3_FGP001
PFAMsCENP-T_C
Model size363
Max annot lvl35493|Streptophyta
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.9e-65
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,37ZQ9@33090|Viridiplantae,3GPFG@35493|Streptophyta,3KZS7@4447|Liliopsida,3II7E@38820|Poales
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
Cds size363
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.5242481-CDS-P-littoralis_Contig808:33406..337691680791655.5242481-CDS-P-littoralis_Contig808:33406..33769Pylaiella littoralis U1_48CDSP-littoralis_Contig808 33407..33769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig808.7.1prot_P-littoralis_Contig808.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig808 33407..33769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig808.7.1

>prot_P-littoralis_Contig808.7.1 ID=prot_P-littoralis_Contig808.7.1|Name=mRNA_P-littoralis_Contig808.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
HNHNPFSSLKFETPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP
AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVT
AMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at P-littoralis_Contig808:33407..33769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig808.7.1 ID=mRNA_P-littoralis_Contig808.7.1|Name=mRNA_P-littoralis_Contig808.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig808:33407..33769- (Pylaiella littoralis U1_48)
CACAACCACAACCCCTTTTCCTCTCTGAAGTTCGAAACACCTCAAGCAAA
CATGTCTGGACGTGGAAAGGGCGGTAAGGGTCTGGGCAAAGGCGGCGCCA
AGCGCCACCGGAAGGTACTCCGCGATAACATCCAGGGCATCACCAAGCCC
GCGATCAGGCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACT
CATCTACGAGGAGACCCGCGGCGTGCTGAAGGTCTTCCTTGAGAACGTCA
TCCGCGACTCGGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTGACC
GCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig808:33407..33769-

>mRNA_P-littoralis_Contig808.7.1 ID=mRNA_P-littoralis_Contig808.7.1|Name=mRNA_P-littoralis_Contig808.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig808:33407..33769- (Pylaiella littoralis U1_48)
CACAACCACAACCCCTTTTCCTCTCTGAAGTTCGAAACACCTCAAGCAAA
CATGTCTGGACGTGGAAAGGGCGGTAAGGGTCTGGGCAAAGGCGGCGCCA
AGCGCCACCGGAAGGTACTCCGCGATAACATCCAGGGCATCACCAAGCCC
GCGATCAGGCGTCTGGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACT
CATCTACGAGGAGACCCGCGGCGTGCTGAAGGTCTTCCTTGAGAACGTCA
TCCGCGACTCGGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTGACC
GCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAA
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