mRNA_P-littoralis_Contig12.49.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: D8LAV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV2_ECTSI) HSP 1 Score: 405 bits (1040), Expect = 7.210e-121 Identity = 297/595 (49.92%), Postives = 334/595 (56.13%), Query Frame = 1
Query: 1273 PPYLAAGVLPFCILGGDLLFLLGQQPRFRSRVKGSIFSKTSGISAPATGGGADAEEGEGRGGGDVPPVKTPSSQAEPPP-----------PLRRPRRGPRLKLSALSAPLSAGSSAPGPRLGAFPGAM--------------------VLPVSEPPPAPPATLTSA----TEGEAAVGAEGAAPGAAECETKAVPPASDNIGGSVGVYG-----TSAVVQPNGWGADNPKDGLPAGKGDGPAAKPSRSQPEEAVPAGIKPQVGESDPAGLKSEGYPAVAATAAAAAAAVGENCVGRSSQMSEDSVATPGQQDMIPAGLLWSDFGGGREEGE-DAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKEIVHGGSSADTGSDDAGGAGGDPESSGQGRASSPGFSEKTDFAWVPAPILLAAMRESRNRSTRKVVVKLGGCRYLRLFNKFVISLWGLDLAAAVKAASIPLHPRTSPLPVPRILLLKPG-KPKGR--GKQSGXXXXXXXXXXRGVGGCAIRGFDCVRPSFLSGRKRTSLGIIEGRRDREAPLARWD 2925
P YLAAGVLPFC+LGGDLLFLLGQQ RF SRV+G F + G S A E EGR PS + P P P+ RPRRGPR K+S +P S+GS+ V E P+ + A TE GA GA G + GG G+ G + VQ N A P G GD P+A + GI P+ G S+ A L E PA G E++ A PGQ +PAGLLWSDFGG RE + DAEETASREFAEESFGIFHGVRL+SDSVARSQATMSSALRDP LRGKRVFECRNGGYVMF+A+VDFVPD+M+NLARKEIV D DA G G+ SGQG+ASSPGFSEKTDFAWVPA +LL AMRESRNRSTRKVVVKLGGCRYLRLF+KFVISLWGLDLAA ++AAS PL R + LP PR LL+K +P R Q AIRG DCVRPSFLSGRKRTSLGII+GRRDR RWD
Sbjct: 139 PAYLAAGVLPFCVLGGDLLFLLGQQLRFHSRVRGRSFPEMGGGSTTPV-----AAEDEGRVASAAARQLPPSIETTPLPSGAPXXXXXXTPVWRPRRGPRAKVSLSLSPGSSGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXQASRETAAKVEEAAPSASFPVAGASRDGTEHGMQTGARGARAGGG----------APMGGGEFGMAGKRSEMVALAVQENDLEAATDS---PCGAGD-PSAAHGAAVKNGPRSGGINPEDGSSNTAVLPEEDPPAA---------------TGDPHPPVEETAAAPGQG-TVPAGLLWSDFGGAREASDADAEETASREFAEESFGIFHGVRLESDSVARSQATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIV----GEDGSGPDAVGVQGECWGSGQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHKFVISLWGLDLAAVIQAASTPLQGRRASLPRPRTLLVKSNAEPISRCDSNQDETGGESSDGATSAERCAAIRGIDCVRPSFLSGRKRTSLGIIDGRRDR-----RWD 689
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A6H5JSG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG8_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 5.500e-116 Identity = 346/787 (43.96%), Postives = 406/787 (51.59%), Query Frame = 1
Query: 1078 IKMPTANHTPATAVSVSIPPASSQSTPPATGALASHDGGSSPPLPALPPTTDRFSFE-----TEPSTASPPPYLAAGVLPFCILGGDLLFLLGQQPRFRSRVKGSIFSKTSGISAPATGGGADAEEGEGRGGGDVPPVKTPSSQAEPPPPLRRPRRGPRLKLSALSAPLSAGSSAPGPRLGAFP-------------------------------------------GAMV-----LPVSEPPPAPPATLTSA-TEGEAAVGAEGAAPGAAECETKAVPPASDNIGGSVGVYG-----TSAVVQPNGWGADNPKDGLPAGKGDGPAAKPSRSQPEEAVPAGIKPQVGESDPAGLKSEGYPAVAATAAAAAAAVGENCVGRSSQMSEDSVATPGQQDMIPAGLLWSDFGGGREEGE-DAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKEIVHGGSSADTGSDDAGGAGGDPESSGQGRASSPGFSEKTDFAWVPAPILLAAMRESRNRSTRKVVVKLGGCRYLRLFNK-----FVISLWGLDLAAAVKAASIPLHPRTSPLPVPRILLLKPG------KPKGRGKQSGXXXXXXXXXXRGVGGCAIRGFDCVRPSFLSGRKRTSLGIIEGRRDREAPLARWDSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSGAACKKNRRHCRKAKRLRAXXXXXXXXEAAVRST 3225
+++P + T A A+ ++ P +QSTP A L + SPP P P R + PS +PP YLAAGVLPFC+LGGDLLFLLGQQ RFRSRV+G F PA GGG+ +S +L LS + PL++G GA V V E PA P L A T+G V G C +A A GG G+ G + VQ N A P+G GD P+A + G P+ G S+ A L E PA + +G E++ A PGQ +P GLLWSDFGG +E G+ DAEETASREFAEESFGIFHGVRL+SDSVARSQATMSSALRDP LRGKRVFECRNGGYVMF+A+VDFVPD+M+NLARKEIV D+GSD A G G+ SGQG+ASSPGFSEKTDFAWVPA +LL AMRESRNRSTRKVVVKLGGCRYLRLF+K FVISLWGLDLAA ++AAS P+H R + LP PRILL+K + R + G + AIRG DCVRPSFLSGRKRTSLGII+GRRDR RWD GGXXX XXXXXXXXXXX XX R+SGAAC+K RR C++A+RL+A V ST
Sbjct: 71 VELPHSVQTTAAAL-IAAPSTVTQSTPTAMVPLRAASRSRSPPRPPPPTAVWRSTAPPPTCVATPSPPAPPAYLAAGVLPFCVLGGDLLFLLGQQLRFRSRVRGRSF--------PAMGGGST------------------TSAXXXXXXXXXXXXXXQLPLSMETTPLTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAQVSRETAAKVEEAAPASPFQLAGASTDGTEHVMQTGV------CRARAGGGAPTG-GGDFGIAGKRSEMAAVAVQENDLEAATDS---PSGAGD-PSALHGTAVKNGPRSGGSNPEDGSSNTALLPEEDPPAAS--------------IGDPHPPVEETAAAPGQG-TVPVGLLWSDFGGAKEAGDADAEETASREFAEESFGIFHGVRLESDSVARSQATMSSALRDPSLRGKRVFECRNGGYVMFVAEVDFVPDLMINLARKEIV---GEDDSGSD-AVGVQGEHGGSGQGQASSPGFSEKTDFAWVPASVLLRAMRESRNRSTRKVVVKLGGCRYLRLFHKASRFSFVISLWGLDLAAVIQAASTPVHGRAASLPRPRILLVKSNAEPISRRDSNRDQTGGESSDGATSAEQCA---AIRGIDCVRPSFLSGRKRTSLGIIDGRRDR-----RWDGGGXXXARXXXXXXXXXXXSDSGDVYGGGDGAXXGLRSGRS----------------------RKSGAACRKRRRQCKQARRLKAAAMAEAAQAGRVPST 770
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A7S3XND0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XND0_HETAK) HSP 1 Score: 89.0 bits (219), Expect = 1.380e-14 Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 2065 VATPGQQDMIPAGLLWSDFGGGRE--EGEDAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKE 2379
V G D GLLWSDFGG +E + E E TASREFAEE+FG+F G+ V +S M + L D GK VF+ NG YVMF+A V FV D+M+NLAR++
Sbjct: 40 VTKKGCLDTQMHGLLWSDFGGKKEPQDQEIPERTASREFAEETFGMFGGLGGSEKIVQKSAEEMLNTLLDKEKEGKEVFKIINGQYVMFLAPVTFVDDLMLNLAREQ 146
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A8J9S0U8_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0U8_9CHLO) HSP 1 Score: 74.3 bits (181), Expect = 1.210e-10 Identity = 55/144 (38.19%), Postives = 73/144 (50.69%), Query Frame = 1
Query: 2107 LWSDFGGGREE-GEDAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKEIVHGGSSADTGSDDAGGAGGDPESSGQGRASSPGFSEKTDFAWVPAPILLAA 2535
+W DFGG RE D ++TASREFAEE+ G+F +DS SVA SQ M++ LRD + V + + G Y MFIA + F+ +M LA ++ + A TG+ EKT FAWV LLAA
Sbjct: 56 MWKDFGGSREAIDSDVQDTASREFAEETLGMFASQNVDSASVAASQVLMAAQLRDQRHSLEVVHKLKKGQYSMFIALLPFLDPLMFYLAMRQNAE--TQAVTGA------------------------EKTAFAWVRLDQLLAA 173
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A7S3VJL3_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VJL3_DUNTE) HSP 1 Score: 67.4 bits (163), Expect = 2.170e-7 Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 2104 LLWSDFGGGREEGE-DAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKE 2379
++WSDFGG RE + D+ ETASREFAEE+ G+F GV +D +V RS M++ LR V + R G Y M+ V ++ + LA ++
Sbjct: 52 IMWSDFGGKREAADADSIETASREFAEETLGVFGGVSVDPAAVKRSADEMAARLRSGDRSLCSVHQLRKGAYHMYACMVTYIDPIFFELAMQQ 144
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A5J4XWS7_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XWS7_9CHLO) HSP 1 Score: 60.5 bits (145), Expect = 1.970e-6 Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 2116 DFGGGREEGE-DAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKEIVHGGSSADTGSDDAGGAGGDPESSGQGRASSPGFSEKTDFAWVPAPILLAA 2535
DFGG RE + D+E TASREFAEE+ G+F G ++ SVA M + L K V + + G Y M++AQ + +M++LA ++ +A+T + D +EKT FAWV LLAA
Sbjct: 19 DFGGQREAIDPDSETTASREFAEETMGLFGGCEVNGSSVAACSRQMRTQLIQRQHVLKVVHQLKKGEYHMYVAQTPHIDPLMLHLALQQ------NAETDAVDG--------------------AEKTAFAWVALSDLLAA 133
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A061QTB2_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QTB2_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 2.410e-6 Identity = 50/152 (32.89%), Postives = 72/152 (47.37%), Query Frame = 1
Query: 2107 LWSDFGGGREEGEDAEE--TASREFAEESFGIFHGVRLDSDSVARSQATMSSALRDPYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKEIVHGGSSADTGSDDAGGAGGDPESSGQGRASSPGFSEKTDFAWVPAPILLAAMRESRNR 2556
+W DFGG RE +D + TASREF+EE+ G+F +D SVA S MS LR R + + G Y F+A+ +V + ++LA + + +TG + +EKT FAWVP LL A+ E+ R
Sbjct: 62 MWGDFGGHREASDDGDSVYTASREFSEETLGMFSSALVDPSSVADSTREMSLILRSRDAMQVR-HKLKKGEYHFFVARTAYVEPLYLHLAAQL------NRETGMVEG--------------------AEKTAFAWVPLGELLLAVSEAGRR 186
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Match: A0A7S0E5L3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E5L3_9CRYP) HSP 1 Score: 62.8 bits (151), Expect = 2.770e-6 Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 2110 WSDFGGGREEGEDAEETASREFAEESFGIFHGVRLDSDSVARSQATMSSALRD------------------PYLRGKRVFECRNGGYVMFIAQVDFVPDMMMNLARKE 2379
WSDFGG RE+ EDAEETA REF+EE+ G++ G+ V S A + L D P + KRVF +NG Y+ F + ++ ++ LAR E
Sbjct: 78 WSDFGGKREDFEDAEETALREFSEETLGLWGGMGGLEQRVQASVANVRRILNDCSARCAGREEEREAERRAPGNQLKRVFVMKNGSYLTFFLPLPYIDPLLFQLARDE 185 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig12.49.1 >prot_P-littoralis_Contig12.49.1 ID=prot_P-littoralis_Contig12.49.1|Name=mRNA_P-littoralis_Contig12.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=840bp MVGSTAGDMTGLADDGAAVRLAGSAGGVCGDPPSAGEDRTSFKSAALPAPback to top mRNA from alignment at P-littoralis_Contig12:234608..240965- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig12.49.1 ID=mRNA_P-littoralis_Contig12.49.1|Name=mRNA_P-littoralis_Contig12.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6358bp|location=Sequence derived from alignment at P-littoralis_Contig12:234608..240965- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig12:234608..240965- >mRNA_P-littoralis_Contig12.49.1 ID=mRNA_P-littoralis_Contig12.49.1|Name=mRNA_P-littoralis_Contig12.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2520bp|location=Sequence derived from alignment at P-littoralis_Contig12:234608..240965- (Pylaiella littoralis U1_48)back to top |