mRNA_P-littoralis_Contig807.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig807.20.1
Unique NamemRNA_P-littoralis_Contig807.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig807.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig807contigP-littoralis_Contig807:114934..115620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size687
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.034147-CDS-P-littoralis_Contig807:114933..1153621680791655.034147-CDS-P-littoralis_Contig807:114933..115362Pylaiella littoralis U1_48CDSP-littoralis_Contig807 114934..115362 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791655.0446472-UTR-P-littoralis_Contig807:115362..1156201680791655.0446472-UTR-P-littoralis_Contig807:115362..115620Pylaiella littoralis U1_48UTRP-littoralis_Contig807 115363..115620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig807.20.1prot_P-littoralis_Contig807.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig807 114934..115362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig807.20.1

>prot_P-littoralis_Contig807.20.1 ID=prot_P-littoralis_Contig807.20.1|Name=mRNA_P-littoralis_Contig807.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MHPTSGSSSAAPQASCAQANMTHPNAAYMPNQDHEEYSSDYDGGYDEGYG
RDNGSHYGRGHGFAHCVQLVHTEPPFSHHQLQPQYQQPQQQAPSQPPHQH
QQPLQQQPQQQYQLTEQQVQLQPPQQVQQPQVQQVQQQQQDP*
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mRNA from alignment at P-littoralis_Contig807:114934..115620-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig807.20.1 ID=mRNA_P-littoralis_Contig807.20.1|Name=mRNA_P-littoralis_Contig807.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig807:114934..115620- (Pylaiella littoralis U1_48)
GGGAGCATGGGCCGGGACGAGGCTTTCCGGGAAGGTATGCAGAGTCCGGG
CGGGGTTGGGGGGTTTATGGTCCTCCATCTCGACGTGCACCGCCCACGTA
TGCAGACTATCTATCCTGAAGGCTATGATGGAAGCGTGTACTCCGACCAG
TCATGCCGCTGACGTAGAAGCTGTCACTTGTGCGGAGAGATTGGCCATCT
GCAAGCCACTTGTAAGACGCGTTTCATCGTCGGAAGAGACCCGGATGCAC
AACGTAGTATGCATCCTACTTCCGGATCCTCCTCCGCAGCCCCTCAGGCC
TCGTGCGCACAGGCCAACATGACCCACCCGAACGCTGCATACATGCCCAA
CCAAGACCACGAGGAGTACAGCAGCGACTATGACGGCGGGTATGACGAGG
GGTATGGGCGGGACAACGGCAGCCACTACGGCAGAGGACACGGATTTGCG
CACTGCGTGCAACTAGTCCACACCGAACCGCCGTTCTCTCATCACCAGCT
GCAACCCCAGTACCAGCAGCCGCAACAACAGGCGCCGTCGCAGCCGCCGC
ACCAGCATCAACAACCGCTGCAGCAGCAGCCGCAGCAACAGTACCAGTTG
ACAGAGCAACAAGTGCAGTTGCAGCCACCGCAGCAGGTGCAGCAGCCGCA
AGTGCAACAAGTCCAGCAGCAGCAGCAGGATCCCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig807:114934..115620-

>mRNA_P-littoralis_Contig807.20.1 ID=mRNA_P-littoralis_Contig807.20.1|Name=mRNA_P-littoralis_Contig807.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig807:114934..115620- (Pylaiella littoralis U1_48)
ATGCATCCTACTTCCGGATCCTCCTCCGCAGCCCCTCAGGCCTCGTGCGC
ACAGGCCAACATGACCCACCCGAACGCTGCATACATGCCCAACCAAGACC
ACGAGGAGTACAGCAGCGACTATGACGGCGGGTATGACGAGGGGTATGGG
CGGGACAACGGCAGCCACTACGGCAGAGGACACGGATTTGCGCACTGCGT
GCAACTAGTCCACACCGAACCGCCGTTCTCTCATCACCAGCTGCAACCCC
AGTACCAGCAGCCGCAACAACAGGCGCCGTCGCAGCCGCCGCACCAGCAT
CAACAACCGCTGCAGCAGCAGCCGCAGCAACAGTACCAGTTGACAGAGCA
ACAAGTGCAGTTGCAGCCACCGCAGCAGGTGCAGCAGCCGCAAGTGCAAC
AAGTCCAGCAGCAGCAGCAGGATCCCTAG
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