mRNA_P-littoralis_Contig807.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig807.13.1
Unique NamemRNA_P-littoralis_Contig807.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.340e-23
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  304 DGTGDGPLADTSGGAGGVGFGGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            D TG GP A   G   G   GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  403 DATGAGPEA--LGNGEGTFGGGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVICHC----PEDVRVT 513
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BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.700e-23
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H +    EDV +T
Sbjct:  638 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHCS----EDVRVT 730
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BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.750e-23
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  783 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVT 875
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BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JE07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE07_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.800e-23
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  178 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVT 270
[Close]
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 4.820e-23
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  638 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVT 730
[Close]
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.090e-23
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  508 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVT 600
[Close]
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.190e-22
Identity = 57/113 (50.44%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:  322 PLADTSGGAGGVGFGGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            P      G  GV FGG F+L+ VCS  + PP  V+   FPN RPG+ VFMGD+GAV+H V SG+ VYNR  P    E+ L+VG+G  + VSF+GDLD++LH      EDVL+T
Sbjct:   47 PFGRRESGGDGVAFGGCFALRFVCS--ALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPD-ERRLMVGDGACMPVSFFGDLDLLLHC----DEDVLVT 152
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BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.400e-21
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV  +PP +  +++FP+R PGS VF+GDTGAV+H V SG+ VYNRR P L  E+ L++G+GK + V F+GDLDVI H      EDV +T
Sbjct:  566 GGLFAMHLVCSVTPSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVASGEKVYNRR-PPLPEERLLMLGDGKHIPVEFFGDLDVIFHC----PEDVRVT 658
[Close]
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5JN93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.600e-21
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F++ LVCSV S+PP +  +++FP+R PGS VF+GDTGAV+H VPSG+ VYNRR P L  E+ L++G+G  +   F+GDLDVI H      EDV +T
Sbjct:  252 GGLFAMHLVCSVTSSPPVREPSDLFPHR-PGSTVFLGDTGAVVHVVPSGEKVYNRR-PPLPEERLLMLGDGTHIPGDFFGDLDVIFHC----PEDVRVT 344
[Close]
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Match: A0A6H5J7K8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.810e-19
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1 
Query:  364 GGFFSLQLVCSVASAPPPQVLAEVFPNRRPGSMVFMGDTGAVLHGVPSGQHVYNRRYPRLVWEKNLIVGNGKQVAVSFYGDLDVILHSTVPGKEDVLIT 660
            GG F+  LVCSV   PP +  +++FP R PGS VF+GDTGAV+H VPS + VYN+R P L  E+ L++G+GK + V  +GDLDVI H      EDV +T
Sbjct:  286 GGLFATHLVCSVTLPPPLREASDIFPYR-PGSTVFLGDTGAVVHVVPSEEKVYNKR-PPLPEERLLLIGDGKHIPVECFGDLDVIFHR----PEDVRVT 378
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig807.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JXN1_9PHAE3.340e-2352.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVD9_9PHAE3.700e-2355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L646_9PHAE4.750e-2355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE07_9PHAE4.800e-2355.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN41_9PHAE4.820e-2355.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE5.090e-2355.56Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JN01_9PHAE7.190e-2250.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBS7_9PHAE2.400e-2153.54CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JN93_9PHAE2.600e-2153.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7K8_9PHAE1.810e-1951.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig807contigP-littoralis_Contig807:101128..101789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size662
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.976176-UTR-P-littoralis_Contig807:101127..1011341680791654.976176-UTR-P-littoralis_Contig807:101127..101134Pylaiella littoralis U1_48UTRP-littoralis_Contig807 101128..101134 -
1680791655.001872-UTR-P-littoralis_Contig807:101503..1017891680791655.001872-UTR-P-littoralis_Contig807:101503..101789Pylaiella littoralis U1_48UTRP-littoralis_Contig807 101504..101789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.9894276-CDS-P-littoralis_Contig807:101134..1015031680791654.9894276-CDS-P-littoralis_Contig807:101134..101503Pylaiella littoralis U1_48CDSP-littoralis_Contig807 101135..101503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig807.13.1prot_P-littoralis_Contig807.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig807 101135..101503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig807.13.1

>prot_P-littoralis_Contig807.13.1 ID=prot_P-littoralis_Contig807.13.1|Name=mRNA_P-littoralis_Contig807.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MLLREATAQVMVHWLTRLVEPAGLASEASFPCSLFVLLPLPPLRKYLPKF
SRIVDRGPWFSWVTPGPCSMAFLLDNMSTTGGTRAWCGRRISSWEMASKW
RYLSMEIWTSFSTVRCLERRTS*
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mRNA from alignment at P-littoralis_Contig807:101128..101789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig807.13.1 ID=mRNA_P-littoralis_Contig807.13.1|Name=mRNA_P-littoralis_Contig807.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=662bp|location=Sequence derived from alignment at P-littoralis_Contig807:101128..101789- (Pylaiella littoralis U1_48)
TGGTGAGAGCAATGTTGACGGGCATCAGCAGATGTACGTGGATGCGACGC
CGGGGGGCCAGCAGTTTATCACGACCAGCAGGGCTTGGATGGCGCAGCGG
CAGCAGGTGACGGCCAGTGGAACTGCGCGGTGCAACACGTGTCGGCAGAG
CAGGCGAATGTTCATGCATCCCTTGGTGACGGTGGCAGCGGCGAGGATGA
CAGTTGGAACAGCGGTGTGGTCCAGCAGGAGTACCTCGCCCAAGATTTGC
CCGAACACGGAGCAGATGTAATCGATTCCGAGGAGAATGCTGCTGAGGGA
GGCGACGGCACAGGTGATGGTCCATTGGCTGACACGTCTGGTGGAGCCGG
CGGGGTTGGCTTCGGAGGCTTCTTTTCCTTGCAGCTTGTTTGTTCTGTTG
CCTCTGCCCCCCCTCCGCAAGTACTTGCCGAAGTTTTCCCGAATCGTCGA
CCGGGGTCCATGGTTTTCATGGGTGACACCGGGGCCGTGCTCCATGGCGT
TCCTTCTGGACAACATGTCTACAACCGGCGGTACCCGCGCTTGGTGTGGG
AGAAGAATCTCATCGTGGGAAATGGCAAGCAAGTGGCGGTATCTTTCTAT
GGAGATCTGGACGTCATTCTCCACAGTACGGTGCCTGGAAAGGAGGACGT
CTTAATCACGCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig807:101128..101789-

>mRNA_P-littoralis_Contig807.13.1 ID=mRNA_P-littoralis_Contig807.13.1|Name=mRNA_P-littoralis_Contig807.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig807:101128..101789- (Pylaiella littoralis U1_48)
ATGCTGCTGAGGGAGGCGACGGCACAGGTGATGGTCCATTGGCTGACACG
TCTGGTGGAGCCGGCGGGGTTGGCTTCGGAGGCTTCTTTTCCTTGCAGCT
TGTTTGTTCTGTTGCCTCTGCCCCCCCTCCGCAAGTACTTGCCGAAGTTT
TCCCGAATCGTCGACCGGGGTCCATGGTTTTCATGGGTGACACCGGGGCC
GTGCTCCATGGCGTTCCTTCTGGACAACATGTCTACAACCGGCGGTACCC
GCGCTTGGTGTGGGAGAAGAATCTCATCGTGGGAAATGGCAAGCAAGTGG
CGGTATCTTTCTATGGAGATCTGGACGTCATTCTCCACAGTACGGTGCCT
GGAAAGGAGGACGTCTTAA
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