mRNA_P-littoralis_Contig807.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig807.8.1
Unique NamemRNA_P-littoralis_Contig807.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig807.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig807contigP-littoralis_Contig807:62884..63269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.9163456-UTR-P-littoralis_Contig807:62883..629161680791654.9163456-UTR-P-littoralis_Contig807:62883..62916Pylaiella littoralis U1_48UTRP-littoralis_Contig807 62884..62916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.9322653-CDS-P-littoralis_Contig807:62916..629711680791654.9322653-CDS-P-littoralis_Contig807:62916..62971Pylaiella littoralis U1_48CDSP-littoralis_Contig807 62917..62971 -
1680791654.9452453-CDS-P-littoralis_Contig807:63141..632691680791654.9452453-CDS-P-littoralis_Contig807:63141..63269Pylaiella littoralis U1_48CDSP-littoralis_Contig807 63142..63269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig807.8.1prot_P-littoralis_Contig807.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig807 62917..63269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig807.8.1

>prot_P-littoralis_Contig807.8.1 ID=prot_P-littoralis_Contig807.8.1|Name=mRNA_P-littoralis_Contig807.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
QPRGRRRGRPRSLERRQRRARRRQRRQPERWYRLKRRLLLAGCMDAHRLL
SLSNLHSNSE*
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mRNA from alignment at P-littoralis_Contig807:62884..63269-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig807.8.1 ID=mRNA_P-littoralis_Contig807.8.1|Name=mRNA_P-littoralis_Contig807.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=386bp|location=Sequence derived from alignment at P-littoralis_Contig807:62884..63269- (Pylaiella littoralis U1_48)
CAGCCACGGGGACGGCGTCGGGGACGGCCTCGCAGTCTAGAGCGGCGGCA
ACGACGGGCTCGACGGCGGCAGCGCCGGCAGCCGGAACGGTGGTACAGGC
TGAAACGGCGGCTGCTGCTGGCTGGATGGTCGCGGCGATAGGAACGGCGT
TGCAGGCTTGAGCGGGCTTGTCGGCGGCGAAGTAATCGGTAATGTAGCTG
GAAGAGGCGAGGCTATCGGCGAGGCTGATCGCTGCCTCAACGGTGGGTTC
TGCTTTGGCTGCGTCGATTCTCCACTGTGCTTTCCATATTCCACATAGCA
TGGATGCACACCGCCTTTTGTCCCTCTCCAATCTCCATTCAAATTCTGAA
TAGAGTAGTGTAAACCTTGGGTTTTGAAAGGCCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig807:62884..63269-

>mRNA_P-littoralis_Contig807.8.1 ID=mRNA_P-littoralis_Contig807.8.1|Name=mRNA_P-littoralis_Contig807.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig807:62884..63269- (Pylaiella littoralis U1_48)
CAGCCACGGGGACGGCGTCGGGGACGGCCTCGCAGTCTAGAGCGGCGGCA
ACGACGGGCTCGACGGCGGCAGCGCCGGCAGCCGGAACGGTGGTACAGGC
TGAAACGGCGGCTGCTGCTGGCTGGATGCATGGATGCACACCGCCTTTTG
TCCCTCTCCAATCTCCATTCAAATTCTGAATAG
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