mRNA_P-littoralis_Contig806.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig806.15.1
Unique NamemRNA_P-littoralis_Contig806.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: D8LCV3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV3_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 1.090e-129
Identity = 204/258 (79.07%), Postives = 215/258 (83.33%), Query Frame = 1 
Query:  400 MKGTTRSGKCEA-----DPYSLAAPGAEPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFS 1158
            MKG   S +        DPY++AAPGAEPLKLSHGTTTVALVC GGVIAAVDSRASMGSFVGSRTTQKVIPVS+HILGTMAGGAADCTFWLRYLGMQAK+FE +NGF MPVATAARVLADALLGQRG+GLSVGTMIMGHD   R SS                    GGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYR+ MSL+EAA LAKRAVRHATYRDAFSGGFINVF VDASGWTRLDVDD+GFLD +
Sbjct:    1 MKGAAGSARMAGRAGGGDPYTVAAPGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDRGNRDSSGRGSVSGGNQG---------GGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLT 249
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: A0A836CP51_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP51_9STRA)

HSP 1 Score: 241 bits (614), Expect = 3.090e-73
Identity = 132/237 (55.70%), Postives = 162/237 (68.35%), Query Frame = 1 
Query:  415 RSGKCEADPYSLAAPGAEPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRL 1125
            R G  E   + L  PGA PL L+HGTTTVA+V  GG+IAAVDSRASMG+F+GS TT K IP+S+ I+GTMAGGAADC+FWLR LG Q ++    NG  + V  AARVLA+ L G  G GLS+GTMIMG DG     S                       L+YVDS+G RV+G YF+VGSGSTYAY VLD GY+ +M++  AAALA RAV+ A +RDA+SGGFINV+ V+A+G T+L
Sbjct:   19 RGGGSEDQNHQLDVPGASPLLLAHGTTTVAMVIDGGIIAAVDSRASMGAFIGSSTTTKFIPISKTIVGTMAGGAADCSFWLRVLGEQVRVLT-GNGARVTVRAAARVLANVLHGLSGGGLSIGTMIMGWDGGAEGGSP---------------------DLYYVDSEGTRVRGSYFAVGSGSTYAYGVLDAGYQRNMTVGAAAALAARAVQRAAFRDAYSGGFINVYHVNATGVTQL 233
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: M1UUH3_CYAM1 (Proteasome subunit beta n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUH3_CYAM1)

HSP 1 Score: 223 bits (568), Expect = 1.260e-65
Identity = 115/229 (50.22%), Postives = 153/229 (66.81%), Query Frame = 1 
Query:  472 LKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFS 1158
            +K  HGTTT+A V R G+I AVDSRASMG ++GS T +K+I ++ ++LGTMAGGAADC+FW RYLGM+ ++ E+Q+   + VA A+++LA+ +   +G GLS+GTMI G D                           G QLFYVDSDG R++G  FSVGSGST+AY VLD+ YR DM   EAA L +RA+ HAT+RDA+SGG+INV+ V A GW  L  DD+G   ++
Sbjct:   65 VKFLHGTTTLAFVFRDGIIVAVDSRASMGQYIGSGTVKKIIEINPYLLGTMAGGAADCSFWERYLGMRCRLHELQHRERISVAAASKLLANIVYEYKGMGLSMGTMIAGWD-------------------------KTGPQLFYVDSDGVRLRGTRFSVGSGSTFAYGVLDQFYRWDMDAAEAAELGRRAIFHATHRDAYSGGYINVYHVKADGWVNLSHDDSGITKYA 268
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: C1EIU4_MICCC (Proteasome subunit beta n=4 Tax=Micromonas TaxID=38832 RepID=C1EIU4_MICCC)

HSP 1 Score: 221 bits (564), Expect = 3.880e-65
Identity = 117/249 (46.99%), Postives = 162/249 (65.06%), Query Frame = 1 
Query:  472 LKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFS--PAHRH*LPPLDSWVGGGR 1212
            +K +HGTTT+  +   GV+ AVDSRAS G ++ S+T +KVI ++ ++LGTMAGGAADC FW R LG+Q ++ E++NG  + VA A+++LA+ L G RG+GLS+GTM+ G D +G                           L+YVDSDG R+KG+ FSVGSGS +AY VLD+GYR D+S++EA  L +RA+ HAT+RDAFSGG I+V+ V+ +GWT++   D G L F   PA     P      GGG+
Sbjct:   57 VKPNHGTTTLGFIFEHGVVIAVDSRASQGPYISSQTVKKVIEINPYLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRISVAGASKLLANTLYGYRGQGLSMGTMVAGWDLKGPG-------------------------LYYVDSDGTRLKGQRFSVGSGSLFAYGVLDQGYRWDLSVEEACELGRRAIYHATFRDAFSGGTISVYHVNENGWTKVSGTDVGELHFEYYPADPVENPEGGKGAGGGK 280
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: A0A0H5RKB4_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RKB4_9EUKA)

HSP 1 Score: 220 bits (560), Expect = 1.570e-64
Identity = 112/233 (48.07%), Postives = 154/233 (66.09%), Query Frame = 1 
Query:  457 PGAEPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDF 1155
            P A  +K +HGTTT+  V +GGV+ AVDSRASMGS++GS T +KVI ++E +LGTMAGGAADC++W R+L  + ++++++NG  + VA A+++L +     RGRGLS GTMI G D RG                          QL+Y+D  G R+KG  FSVGSGSTYAY VLD  Y+ DM+ +EA  L KRA+ HAT+RDA+SGG INV+ ++ +GWT++  DD   L +
Sbjct:   73 PIAPDMKYAHGTTTLGFVFKGGVLIAVDSRASMGSYIGSGTVKKVIEINERLLGTMAGGAADCSYWERHLATECRLYQLRNGENISVAAASKILCNIFFQYRGRGLSCGTMIGGWDQRGP-------------------------QLYYIDDKGTRMKGPRFSVGSGSTYAYGVLDTHYKPDMTKEEAVELGKRAIYHATHRDAYSGGTINVYLIEEAGWTKMFSDDMNTLHY 280
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: A0A7S0RES2_9CHLO (Proteasome subunit beta n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RES2_9CHLO)

HSP 1 Score: 219 bits (557), Expect = 1.730e-64
Identity = 111/228 (48.68%), Postives = 152/228 (66.67%), Query Frame = 1 
Query:  472 LKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDF 1155
            +K SHGTTT+A + +GGVI AVDSRASMG ++ S+T +KVI ++ H+LGTMAGGAADC FW R LGMQ +++E+ N   + VA A+++LA+ L   RG GLS+GTM+ G D  G S                         L+YVDS+  R+KG  FSVGSGS +AY VLD+GY+ DM+ +EA  L ++A+ HAT+RDA+SGG ++V+ V   GWT++  DD G L +
Sbjct:   54 VKPSHGTTTLAFIFKGGVIVAVDSRASMGPYISSQTVKKVIEINPHLLGTMAGGAADCQFWQRNLGMQTRLYELNNKKRISVAGASKLLANTLFSYRGMGLSMGTMVAGWDDSGPS-------------------------LYYVDSEAQRIKGERFSVGSGSLFAYGVLDQGYKWDMTDEEARELGRKAIYHATFRDAYSGGTVSVYHVTQDGWTKVSGDDVGELHY 256
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: A0A7J7IMB5_9RHOD (Proteasome subunit beta n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMB5_9RHOD)

HSP 1 Score: 220 bits (560), Expect = 1.990e-64
Identity = 113/229 (49.34%), Postives = 153/229 (66.81%), Query Frame = 1 
Query:  472 LKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFS 1158
            +K  HGTTT+A V R G+I AVDSRASMG ++GS T +K+I ++ ++LGTMAGGAADC+FW RYLGM+ ++ E+Q+   + VA A+++L++ +   +G GLS+GTMI G D                           G QLFYVDSDG R++G  FSVGSGST+AY +LD  YR DM+  EAA L +RA+ HAT+RDA+SGG+INV+ V A GW  L  DD+G   ++
Sbjct:   67 VKFLHGTTTLAFVFREGIIVAVDSRASMGQYIGSGTVKKIIEINPYLLGTMAGGAADCSFWERYLGMRCRLHELQHRERISVAAASKLLSNIVYEYKGMGLSMGTMIAGWD-------------------------KTGPQLFYVDSDGIRLRGTRFSVGSGSTFAYGILDHFYRWDMNATEAAELGRRAIFHATHRDAYSGGYINVYHVKADGWVNLSHDDSGISKYA 270
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: M2W568_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W568_GALSU)

HSP 1 Score: 218 bits (555), Expect = 5.140e-64
Identity = 108/230 (46.96%), Postives = 157/230 (68.26%), Query Frame = 1 
Query:  457 PGAEPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGF 1146
            P  + +K  HGTTT++ +   G++AAVDSRASMG ++GS + +KVI +++++LGTMAGGAADCTFW RYLGM+ +IFE++N   + VA A+++L + +   +G GLS+GTMIMG D +G                           ++YVDS+G R+KG  FSVGSGST+A  VLD+GY+ +MS++EA  L +R++ HAT+RDAFSGG+INV+ +   GW  +  +D+GF
Sbjct:   48 PPKDLVKFHHGTTTLSFIFSEGIVAAVDSRASMGQYIGSGSVKKVIEINKYLLGTMAGGAADCTFWERYLGMRCRIFELKNKERISVAAASKILCNTVYQYKGMGLSMGTMIMGWDKKGP-------------------------HIYYVDSEGTRLKGSKFSVGSGSTHALGVLDQGYKWNMSVEEACELGRRSIYHATHRDAFSGGYINVYYIGPDGWKFISHEDSGF 252
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: E1Z6F9_CHLVA (Proteasome subunit beta n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6F9_CHLVA)

HSP 1 Score: 217 bits (553), Expect = 1.020e-63
Identity = 114/242 (47.11%), Postives = 154/242 (63.64%), Query Frame = 1 
Query:  433 ADPYSLAAPGAEPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFS 1158
            AD  S      E +K +HGTTT+  + +GGVI AVDSRAS GS++ S+T +KVI ++ H+LGTMAGGAADC FW R LG Q +++E+ NG  + V  A+++LA+ +   RG GLS+GTM+ G D  G                           L+YVDSDG R KG+ FSVGSGS YAY VLDEGYR D+S++EA  L +R++ HAT+RDA SGG ++ + V   GWT++  +D G L F+
Sbjct:   41 ADIDSFEREVVEYVKPNHGTTTLGFIFQGGVIIAVDSRASQGSYISSQTVKKVIEINPHLLGTMAGGAADCQFWERNLGRQCRLYELANGKRITVRGASKLLANTMFSYRGMGLSMGTMVAGWDEAGPG-------------------------LYYVDSDGQRTKGKLFSVGSGSLYAYGVLDEGYRWDLSVEEAVELGQRSIYHATFRDAASGGTVSAYHVTQEGWTKVRGEDVGQLHFN 257
[Close]
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Match: A4S728_OSTLU (Proteasome subunit beta n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S728_OSTLU)

HSP 1 Score: 217 bits (553), Expect = 1.980e-63
Identity = 110/245 (44.90%), Postives = 160/245 (65.31%), Query Frame = 1 
Query:  472 LKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDGRGRSSSXXXXXXXXXXXXXXXXXXXEGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRDAFSGGFINVFRVDASGWTRLDVDDAGFLDFSPAHRH*LPPLDSWVGG 1206
            +K +HGTTT+A +   G++ AVDSRAS G ++ S+T +KVI ++  +LGTMAGGAADC FW R LG+Q ++ E++NG  + V  A+++LA+ L   +G+GLS+GTM+ G D                           G  L+YVDS+G R+KG+ FSVGSGS +AY VLD+GY+ D++++EA  L +RA+ HAT+RDAFSGG ++V+ V A+GWT++  DD G L FS      +  +D+  GG
Sbjct:   59 VKPNHGTTTLAFIFEHGIVVAVDSRASQGPYISSQTVKKVIEINPFLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRITVRAASKLLANTLYSYKGKGLSMGTMVAGWD-------------------------LNGPGLYYVDSEGTRLKGQRFSVGSGSLFAYGVLDQGYKWDLTVEEACELGRRAIYHATFRDAFSGGTVSVYHVGANGWTKVTGDDVGELHFSYYPATPVDDVDAHCGG 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig806.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV3_ECTSI1.090e-12979.07Proteasome subunit beta n=1 Tax=Ectocarpus silicul... [more]
A0A836CP51_9STRA3.090e-7355.70Proteasome endopeptidase complex n=1 Tax=Tribonema... [more]
M1UUH3_CYAM11.260e-6550.22Proteasome subunit beta n=2 Tax=cellular organisms... [more]
C1EIU4_MICCC3.880e-6546.99Proteasome subunit beta n=4 Tax=Micromonas TaxID=3... [more]
A0A0H5RKB4_9EUKA1.570e-6448.07Proteasome subunit beta n=1 Tax=Spongospora subter... [more]
A0A7S0RES2_9CHLO1.730e-6448.68Proteasome subunit beta n=1 Tax=Pyramimonas obovat... [more]
A0A7J7IMB5_9RHOD1.990e-6449.34Proteasome subunit beta n=1 Tax=Cyanidiococcus yan... [more]
M2W568_GALSU5.140e-6446.96Proteasome subunit beta n=1 Tax=Galdieria sulphura... [more]
E1Z6F9_CHLVA1.020e-6347.11Proteasome subunit beta n=1 Tax=Chlorella variabil... [more]
A4S728_OSTLU1.980e-6344.90Proteasome subunit beta n=1 Tax=Ostreococcus lucim... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig806contigP-littoralis_Contig806:75498..81277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCV3
Preferred namePSMB11
PFAMsProteasome
Model size1489
Max annot lvl2759|Eukaryota
KEGG koko:K02737,ko:K02740,ko:K05654,ko:K11598
KEGG TC3.A.1.209
KEGG Pathwayko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010033,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030217,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0036037,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043374,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1905368,GO:1905369,GO:1990111
Exons6
Evalue6.3e-133
EggNOG OGsCOG0638@1|root,KOG0175@2759|Eukaryota
Ec32 ortholog description20S proteasome beta 5 subunit
Ec32 orthologEc-07_007040.1
EC3.4.25.1
Descriptionthreonine-type endopeptidase activity
Cds size1011
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig806.15.1prot_P-littoralis_Contig806.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig806 75811..81112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.31882-UTR-P-littoralis_Contig806:75497..758101680791654.31882-UTR-P-littoralis_Contig806:75497..75810Pylaiella littoralis U1_48UTRP-littoralis_Contig806 75498..75810 -
1680791654.407924-UTR-P-littoralis_Contig806:81112..812771680791654.407924-UTR-P-littoralis_Contig806:81112..81277Pylaiella littoralis U1_48UTRP-littoralis_Contig806 81113..81277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791654.336136-CDS-P-littoralis_Contig806:75810..759111680791654.336136-CDS-P-littoralis_Contig806:75810..75911Pylaiella littoralis U1_48CDSP-littoralis_Contig806 75811..75911 -
1680791654.3504658-CDS-P-littoralis_Contig806:76645..767701680791654.3504658-CDS-P-littoralis_Contig806:76645..76770Pylaiella littoralis U1_48CDSP-littoralis_Contig806 76646..76770 -
1680791654.360517-CDS-P-littoralis_Contig806:77407..776821680791654.360517-CDS-P-littoralis_Contig806:77407..77682Pylaiella littoralis U1_48CDSP-littoralis_Contig806 77408..77682 -
1680791654.3778226-CDS-P-littoralis_Contig806:78930..790171680791654.3778226-CDS-P-littoralis_Contig806:78930..79017Pylaiella littoralis U1_48CDSP-littoralis_Contig806 78931..79017 -
1680791654.3889053-CDS-P-littoralis_Contig806:79491..796431680791654.3889053-CDS-P-littoralis_Contig806:79491..79643Pylaiella littoralis U1_48CDSP-littoralis_Contig806 79492..79643 -
1680791654.398289-CDS-P-littoralis_Contig806:80841..811121680791654.398289-CDS-P-littoralis_Contig806:80841..81112Pylaiella littoralis U1_48CDSP-littoralis_Contig806 80842..81112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig806.15.1

>prot_P-littoralis_Contig806.15.1 ID=prot_P-littoralis_Contig806.15.1|Name=mRNA_P-littoralis_Contig806.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=337bp
MVTGTRRRPRQRQGEKITRKTISISEVLVWRTLCLALSFLSVLSPGTITT
AHASSTPFATGSRNLFQGVGDDSALARTMKGTTRSGKCEADPYSLAAPGA
EPLKLSHGTTTVALVCRGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHIL
GTMAGGAADCTFWLRYLGMQAKIFEVQNGFPMPVATAARVLADALLGQRG
RGLSVGTMIMGHDGRGRSSSGSGSGSSGGGTGVDSGGTGEGGQLFYVDSD
GARVKGRYFSVGSGSTYAYSVLDEGYREDMSLQEAAALAKRAVRHATYRD
AFSGGFINVFRVDASGWTRLDVDDAGFLDFSPAHRH*
back to top

mRNA from alignment at P-littoralis_Contig806:75498..81277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig806.15.1 ID=mRNA_P-littoralis_Contig806.15.1|Name=mRNA_P-littoralis_Contig806.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5780bp|location=Sequence derived from alignment at P-littoralis_Contig806:75498..81277- (Pylaiella littoralis U1_48)
CTTGAATTATGATACTGCTGTACCTGAAACGAAGAAGTGCAGTTGCTTCG
TATCATCACATACCGATTGTTGCTGGACGCGAAAGAGACCTGTTGAAGCT
ATAGTATCCCACAGCTCGCGTTGCTTGAAGCCTTTTTCGGTGCTGCTACG
CCCCTGGCGAGAAATATGGTAACAGGCACGCGGCGACGGCCACGGCAACG
GCAAGGAGAGAAGATCACGAGAAAAACTATATCAATAAGTGAGGTATTAG
TCTGGCGGACACTCTGCCTCGCCCTGTCGTTCCTCTCAGTCCTCTCGCCA
GGCACCATCACCACGGCACATGCCTCATCGACGCCCTTCGCAACCGGCAG
CAGAAACCTTTTCCAGGGCGTCGGTGATGACTCTGCCCTGGCACGCACGA
TGAAGGGAACAACGCGGTCAGGAAAGTGCGAAGCAGGTGCGCCAAAAACG
CGGTGTAATTACGGCTGTGTGTGTTCTTGGTGATTGTGAGCTGTGAGAGC
TGTGAAGCTGTGCCGGTACCATCAGTATCGGTTTGTCTTGATCAAATGAT
GTGATCATAAATTTACATATCATATGATATGGTTAGCTTTGGTTGTCCTT
GGGTCCGATTGGGGGATGAGGGTCTCCCTGGATGCTTTCATAGGTTGATG
GCTGTGTTCTGCAGTTACTGCTGTATGATAGGTACTATACTGGTTATCCT
TGGGTCCGATTGGGGAATGAGGGTCTCCCTGTATGTTGCATACCTGGTAG
GTCGATGACTGTGTTCTGCACCATACTTACGAAGTTACCGTATGGTTGTC
CTTAAGTCCGAGTAGGGAATACCTTAGGGCCTCTTTGCACTTTCATGGTG
GGTCGATGCCCATTACTCTGCAATACGGCTGTACATCTGATGTAGGTGGT
GGTCATGTGCACGTCTACCGGTATTATCATCCCCGTTGCAAGTACTGCTG
TACCGGGCGCCAAGCGAACACCTTTCGGCATATACAGGGCGCATTACCCA
GGCTTGCACAGCAGGGGGGGTTGTTTATCTTCCCGCGCGACGCAGCAGTA
TCTACAGCGCTGCTGCTACTGCGAAGATTTGTGCAGTCTTGATCCATAGA
TGGGAGATATAGCGCCAAGAAGCACGGCCGAACGATAGCCTACGGGCTTT
TGTTCGAGGTCTACCGCCTGCTGCACCTCTTTCTGTGCATCGATTCCAGC
AGTCGACAGACTAAAGACGTTTTTTTCGTTTTACCAAAGGGTGTATGATA
TAGGTGAAGAATACCTGTATTTGGTTGACAACACACAGGCACACAAATAC
ACATTTAGGTAGCCGCCGCTGTGCCTGCTCAACGCATTAACTTTGCATAT
TTGATATTTGTGACAAGCATCAATCATGGATCACCTACAGCAGTACAAAA
CGACCTGCCAAGGCAGTCTTGCCTTCGCCTTGCCTAAGTCTTTCCGTGGC
ATGGCCGTAAAGTAACTCCGATCAGGGGTTGTCCATACACGACACAGAAG
TATGATAAGAGGATCCATCTCTATTTTCTTGGAAAACGAACTCGATTTGG
GGACTATTTCCACCAATCGCGTCCGTGTGTAGTGATGCATGCATGTCTCA
TGGGTTTTCGCTGTGATACCTTGCGATTCAGCAGACCCTTACTCGCTTGC
GGCGCCGGGGGCCGAACCGCTCAAGCTGAGCCACGGCACGACTACGGTCG
CGCTGGTCTGCAGGGGCGGCGTGATCGCCGCGGTGGACTCACGGGCCAGC
ATGGGCTCTTTCGTCGGCTCTCGCACGACTCAGAAGGTGGGAGGGGGGAG
GGTTCAGGTTGTTTTTTCCCCAACCAAAACATAGTCTCAGCAGACGAGTC
AGTCTTTCTCGTGCACGTATGTATGACGGCATGCACGGCTGCGATCCGCA
GGAGGGCACGCGGGCGGGGTAATCCGCATACTCCTCCCTCGCTCCCGCAA
CGCGGACACTTTCTCGAGCGAGATTACTCAACTACCGCCGTACGCGCAAG
GCTGCCGCGCCGCTTCAGGCTTTTTCTCTTGCGACCAAACTCCGTTCTAA
ACTTGTGGTATTTATCAAGCCGTGGTGCAGTCTACACATGTACCCGCACG
AGTATTGGTATCCAGAAAACCGCCCTTTTATATACCGTACAGTAAAATAA
TAGTGTAACTTTGTTCTTGGTACTAGGTTTGAAGTTCGTGGGCGACAAGT
TTGACCGAACTTCTGCGTGGCGCGGCGAATTTGCACCCCCCCCCCCCCGC
TTCAACGCAGGTAATTCCGGTGTCCGAGCACATCCTTGGCACCATGGCCG
GAGGAGCGGCGGACTGCACGTTCTGGCTCAGATACCTGGGCATGCAGGTA
CTCTTAATGTAGACGTGTTGGTGGTGTTGGTGGTGGTGGTGGTGCTGCTG
CTTTGATTATTGACGGTCACACATGTGCTGAAATGTTCTGGTGCCCAGAG
GAAAATAGAAAAGAGTTGTTTGTTCTTTTTTCCCACTGACTAAAAGTTGC
ACGAAGCCCCCCACCTCGATCTTGCTGTGACATCCAACAAGCTACACACC
CTCCGAGTTTGAGCCGGTGCTGGAAGATCTATGATGCGTAAATCGAGTGG
GCTTTCAAGTGTTTTGTAATGTTCTGGTAAACAAGATCTTGTACTTTGGT
GACATTTTTGCAGATAGACATAATCGTTGTTCTTGGCTCGAAAAATCTTA
ACCTAGTCATGAACTGTACTCTAGACGTGGTTTGGCTCGGTTTCAGACGA
CATTTGCAGGCCTATCGTCAGCGTTGTAGTGCTGATCCCGAAACCGTCAA
ACCTGTTTTGGGTAGTATATACACCAAGCTACAACACCCTCCAAGTTGTA
GCCGATTTGGTCAGTTCTAAGAATGTCTAAAACTGCTCTAGAGTTTGTCT
CCCGAGAGCTAAAAAATCGAGCTCTGGGGACACAGAAATATATGAGAAAA
ACGTCCTGCTCTCAGGCACAATGACGCAGCATTCCTGCAGTTCGAAGCAA
ACCCATGGCACGTATACTACTGGTGGAGGTACAACATGGCCCTCTTGGTG
CCGCCTGTTGATTTCGTACCAAACCGCGGTCTGTGCCAGGAGCGCCGGCC
GTGATGAAGGTCGTGCCCCCAAATGGTACTGGCAGCGTTATGTTGTGCAA
TTTTTGGGGAGGGGCTCCGACGATCGTATTTGCACCGCGGGTACCGCTCA
AAAATGTCATTGTCATTAATATGAAGGAGTGCTAAACCAGCACATGTGGT
AAATGAGAAGTACACTCAAGCAAGGGGCTACGCCGCATCACTCAGCTGCT
TGTGACCTGGCCCGTGGGTCCATGGTGCACCGTTCAAAGAGAAAACAACC
CTGAGAAAGGGCACAGCAGAGCAACACACTACAGTACAGTGTATCATACG
GCGCATCCTAACGCACGGCCCGCTGACAAACGTCTACCTACATCTGTACG
CACATGCATACATACATACATACATACATACAAGGATCTGTGCAGACAAG
CATTCGTTCATACAAGTACACTTCGTACATACATTCGTGCAGGGTGAGTG
TTTTTTTTCATTTTCGGCCCCAACGAACGAAAACAACCGAAACAGGCCAA
GATATTCGAAGTTCAAAACGGGTTTCCAATGCCAGTGGCCACGGCGGCAA
GGGTGCTCGCGGACGCGCTCTTGGGCCAGAGAGGGAGGGGCCTGTCGGTG
GGCACGATGATCATGGGGCATGATGGGCGGGGGCGCAGCAGCAGTGGTAG
CGGTAGCGGCAGCAGCGGCGGCGGTACGGGCGTCGATAGCGGTGGAACCG
GAGAAGGCGGACAGCTGTTCTACGTGGATAGCGACGGGGCTAGGGTTAAG
GGTCGCTATTTCTCCGTCGGGTGAGATGAAACGAACGCGGTTGAGTGTTT
TTGGAGGAGGCGTTGGTGCTCGCAAGCCTTTTTGGGCTTTTGCCGTGGAC
GGACGGACGAACGGATGGACTCGCCTGATAGAGTACCTACCGGCTGTGTT
GCAACCGCCTCCTCTCTCTCTCTCTCGTGCAGGTTGTCAAGTACATAGCG
GTCGCACAGCAGCACCTTCCGCGTACGGTGGCATTGATTAGTACACGACT
TAAATCATGTCATCACTTTTCACATCACATCACATGACGTCACGTCAAAT
CACATCACATCATGCCAGATCACATCGCATCACACGGGAATACAGCACGT
CACCTGTACACCGCCCACCAACACCAAATCGCATCACAACGATCCCGACC
ACGCTCCTCCATCACACCACGTGCATCTCAACATCTCCATCCGGCACGGT
CCGAAAGATACGCCTGCATCGATGTATCATAAGACGAGGCTGCCGTATCC
ATGCAGGCTGAATTCATCGTGGCTTTGCCTTTGCGATATGCAAACATGCT
TATACAGCAAGTGTACAGCAAGTGTACCGTATGATACGATGTTGCACACG
TGTCTGCGAGCTGATTTTTCCTCGGGGGCCCCGTTGTTCGTTTTTTTTTT
TTTTAAGGTCGGGAAGCACCTACGCGTACAGCGTATTGGACGAGGGCTAC
CGCGAGGACATGTCTCTGCAGGAGGCGGCCGCCCTCGCGAAGAGGGCTGT
GCGCCACGCCACCTACAGGGACGCCTTCTCGGGTGCGATGGATGTGCTTG
CTTTTCTCGCCGTCGTCGACATCGTCGTTGTTGTTGCTCTCCTGGGTACT
CTTCTCCCATATTTTTTTTTCTTTCATTCAATCAATTTTGATCTTCGGGG
TTGTTGTTGTTGCCCTCCTCGGTACTTTCCTCCTGTTTTGTTTTCTTTCT
TTTCATTCATCTTTTAATCCATTTTTCTGTTCCTTTTTTCTGAGATGCAG
CGATGCCTGTTCAGCTCTTTCGGTGGGGCTGATCACATCGAAGGTGTTCC
TGTCCCGAAACCCCCCCCCCCCTCTGCGTTTGTTGTTTCATTTGATTGGC
TGCCTCGCGGGAACAGAGCTCTGTGCTTGCGCTCCGCACAGCCTGGAGAG
AGACTCATTCTGGGATAAAATATGTGCTCTGCAACCAGTTCTGATTTGTC
CCCGTTTCATCGTCTCGTTGCATCACGTTTGTAACCCCACGGCATGGCTT
CACAGCAAGCAGTAGCTGCTGCTGCTTTGATACTGCTCCTTTTTTTTTGT
TGGTCTCTCAATGGCGCCGATATTGTTGAACTATCATACAAGTATCATAT
TGCACGACACGAAATTACCATGAATGAACTGAAACACACCCACCTATGCA
TGAAATATGCGAATCTGCGTCCACCCTCAACACCAAGACCAAGAAATGTG
TTGGCTTTGCGTTAACTCACGGCGCATGCGTATGATATACGCGCTGTGTG
CGAAATACAATTCCAGGCGGTTTCATCAACGTTTTCCGAGTGGACGCCTC
CGGCTGGACCAGGCTCGACGTGGACGACGCAGGGTTCTTGGACTTCAGCC
CTGCCCACAGACATTGATTGCCCCCGCTCGACTCATGGGTGGGGGGTGGA
AGGATGACGACGATGGATGGCGGTGGTGATGGTGGTGGTGGTGATGATGG
TGACGGTGTTTGGGAAAAGAAGGATGACGATGCTTCAAAGGTTGCGCTGG
TAGTGGTAATGGCGGCGGCGGATTTGGAAACGAGTATTGCAAGGGAGCAA
ACCGTCTACTCCTTGTAAGTAATGTTGGCAATTGTTGGCGCAATTTTTCG
CTGGAGCTTTTGCAAGGGGCAAAGAGTAGTTTGCGGGGCGGACCCTTCCC
CTCCCGCTCAAGTCTCTTATTTTCGGTGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig806:75498..81277-

>mRNA_P-littoralis_Contig806.15.1 ID=mRNA_P-littoralis_Contig806.15.1|Name=mRNA_P-littoralis_Contig806.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1011bp|location=Sequence derived from alignment at P-littoralis_Contig806:75498..81277- (Pylaiella littoralis U1_48)
ATGGTAACAGGCACGCGGCGACGGCCACGGCAACGGCAAGGAGAGAAGAT
CACGAGAAAAACTATATCAATAAGTGAGGTATTAGTCTGGCGGACACTCT
GCCTCGCCCTGTCGTTCCTCTCAGTCCTCTCGCCAGGCACCATCACCACG
GCACATGCCTCATCGACGCCCTTCGCAACCGGCAGCAGAAACCTTTTCCA
GGGCGTCGGTGATGACTCTGCCCTGGCACGCACGATGAAGGGAACAACGC
GGTCAGGAAAGTGCGAAGCAGACCCTTACTCGCTTGCGGCGCCGGGGGCC
GAACCGCTCAAGCTGAGCCACGGCACGACTACGGTCGCGCTGGTCTGCAG
GGGCGGCGTGATCGCCGCGGTGGACTCACGGGCCAGCATGGGCTCTTTCG
TCGGCTCTCGCACGACTCAGAAGGTAATTCCGGTGTCCGAGCACATCCTT
GGCACCATGGCCGGAGGAGCGGCGGACTGCACGTTCTGGCTCAGATACCT
GGGCATGCAGGCCAAGATATTCGAAGTTCAAAACGGGTTTCCAATGCCAG
TGGCCACGGCGGCAAGGGTGCTCGCGGACGCGCTCTTGGGCCAGAGAGGG
AGGGGCCTGTCGGTGGGCACGATGATCATGGGGCATGATGGGCGGGGGCG
CAGCAGCAGTGGTAGCGGTAGCGGCAGCAGCGGCGGCGGTACGGGCGTCG
ATAGCGGTGGAACCGGAGAAGGCGGACAGCTGTTCTACGTGGATAGCGAC
GGGGCTAGGGTTAAGGGTCGCTATTTCTCCGTCGGGTCGGGAAGCACCTA
CGCGTACAGCGTATTGGACGAGGGCTACCGCGAGGACATGTCTCTGCAGG
AGGCGGCCGCCCTCGCGAAGAGGGCTGTGCGCCACGCCACCTACAGGGAC
GCCTTCTCGGGCGGTTTCATCAACGTTTTCCGAGTGGACGCCTCCGGCTG
GACCAGGCTCGACGTGGACGACGCAGGGTTCTTGGACTTCAGCCCTGCCC
ACAGACATTGA
back to top