mRNA_P-littoralis_Contig806.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig806.4.1
Unique NamemRNA_P-littoralis_Contig806.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 5.850e-114
Identity = 161/167 (96.41%), Postives = 167/167 (100.00%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQDAL 597
            MSDYATELLRRQLQELNKNPPEGVSVGL++D+NMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTF+SEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSV+SMLSDPNDESPANIDAAVMWR+DREAFKKKSRLLVRKSQDAL
Sbjct:    1 MSDYATELLRRQLQELNKNPPEGVSVGLANDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA)

HSP 1 Score: 287 bits (734), Expect = 6.100e-94
Identity = 135/165 (81.82%), Postives = 149/165 (90.30%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            M+DYATELLRRQL ELN+NPPEGVSVGL DD N++ WELLIVGP DTLYE G FKA LEFPKDFPN+PPTMTF S+M+HPNVY DGRVCISILHPPGED+FN+QETAEERWRPILGVE II+SVISMLSDPNDESPANIDAAV WRS+R+AFKK+ R  VRKS +
Sbjct:    1 MTDYATELLRRQLNELNRNPPEGVSVGLVDDSNIYQWELLIVGPPDTLYEEGLFKATLEFPKDFPNSPPTMTFTSDMWHPNVYEDGRVCISILHPPGEDRFNDQETAEERWRPILGVESIIMSVISMLSDPNDESPANIDAAVQWRSERDAFKKRVRKCVRKSHE 165
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA)

HSP 1 Score: 281 bits (720), Expect = 7.760e-92
Identity = 135/167 (80.84%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQDAL 597
            M+DYATELL+RQL ELNKNPPEGVSVGL DD ++F WELL+VGPADTLYEGGFFKA+L FP DFPN PPTMTF +EM+HPNVY DGRVCISILHPPGED+FN QE+A+ERWRPILGVE IIVSVISMLSDPNDESPANIDAAV WR+DR  FKK+ R +VRKSQ+ L
Sbjct:    1 MTDYATELLKRQLHELNKNPPEGVSVGLVDD-SVFEWELLLVGPADTLYEGGFFKARLTFPSDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNSQESADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQWRNDRAGFKKRVRAVVRKSQEDL 166
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC)

HSP 1 Score: 275 bits (702), Expect = 4.120e-89
Identity = 125/163 (76.69%), Postives = 147/163 (90.18%), Query Frame = 1 
Query:  103 DYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            DY  ELLRRQL EL++NPPEGVSVGL DDEN+F WE+++VGP DTLYEGGFF+A+LEFPKDFPN PP MTF+S+M+HPNVYP G VCISILHPPGED+ N QE+A+ERWRPILGVE I+VSVISMLSDPND+SPANIDAAV WR+D++AFKK+ R +VRKSQ+
Sbjct:    2 DYGRELLRRQLTELSRNPPEGVSVGLGDDENIFHWEIMLVGPPDTLYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPNVYPSGVVCISILHPPGEDQMNAQESADERWRPILGVESILVSVISMLSDPNDDSPANIDAAVEWRNDKDAFKKRCRRIVRKSQE 164
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO)

HSP 1 Score: 273 bits (698), Expect = 1.720e-88
Identity = 131/165 (79.39%), Postives = 146/165 (88.48%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            MSDY TELLRRQL +L KNP + VSVGL DD N++ WE+LI+GP  TLYEGGFFKAKL FP DFPN PPTMTF SEM+HPNVY DGRVCISILHPPGED+FN+QE+AEERWRPILGVE I+VSVISMLSDPNDESPAN+DAAVMWR+DR AFKKK R +VRKSQ+
Sbjct:    1 MSDYGTELLRRQLTDLAKNPIDLVSVGLVDDSNVYEWEILIMGPDGTLYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPNVYTDGRVCISILHPPGEDEFNQQESAEERWRPILGVEQILVSVISMLSDPNDESPANLDAAVMWRNDRAAFKKKVRQVVRKSQE 165
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A024UPR9_9STRA (UBC core domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPR9_9STRA)

HSP 1 Score: 273 bits (697), Expect = 2.350e-88
Identity = 126/163 (77.30%), Postives = 145/163 (88.96%), Query Frame = 1 
Query:  103 DYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            DY  ELLRRQ  EL++NPPEGVSVGL DDEN+F WE+++VGP DTLYEG FFKA+LEFPKDFPN PP MTFVSEM+HPNVYP+G VCISILHPPGED+ N QE+A+ERWRPILGVE I+VSVISMLSDPND+SPANIDAAV WR+++EAFKK  R +VRKSQ+
Sbjct:    2 DYGRELLRRQFTELSRNPPEGVSVGLGDDENLFNWEIMLVGPPDTLYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPNVYPNGVVCISILHPPGEDRMNAQESADERWRPILGVEAILVSVISMLSDPNDDSPANIDAAVEWRTNKEAFKKHCRRIVRKSQE 164
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A7S2AVY1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVY1_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.110e-86
Identity = 128/173 (73.99%), Postives = 148/173 (85.55%), Query Frame = 1 
Query:   76 AAGSGAVMSD-YATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            AA S +V  D Y  ELLRRQL +LN+NPP+GVSVGL DD+N+ +WE++++GP++T+YEGGFFKA LEFP DFPN PP M FVSEM+HPNVY DGRVCISILHPPGEDK+N QETAEERWRPILGVE II+SV+SML DPNDESPANIDAAVM R DR AFKKK R  VRKS++
Sbjct:    3 AASSSSVAGDQYCIELLRRQLADLNRNPPDGVSVGLVDDDNIMIWEIMLIGPSETMYEGGFFKATLEFPPDFPNMPPEMRFVSEMWHPNVYADGRVCISILHPPGEDKYNAQETAEERWRPILGVEQIILSVMSMLGDPNDESPANIDAAVMLREDRPAFKKKVRQCVRKSEE 175
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A8K1CH94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH94_PYTOL)

HSP 1 Score: 268 bits (686), Expect = 1.160e-86
Identity = 123/166 (74.10%), Postives = 145/166 (87.35%), Query Frame = 1 
Query:   94 VMSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            + +DYA ELL+RQ  E++KNPPEGVSVGL DDEN+F WE+L++GP DTLYEGGFFKA LEFP +FPN PP MTF SEM+HPNVYP+G VCISILHPPGED+ N+ ETA+ERWRPILGVE I+VSVISMLSDPND+SPANIDAAV WR+D++ FKK  R +VRKSQ+
Sbjct:    1 MATDYARELLKRQFIEMSKNPPEGVSVGLGDDENIFRWEILLIGPPDTLYEGGFFKAVLEFPPNFPNMPPKMTFTSEMWHPNVYPNGIVCISILHPPGEDQLNQHETADERWRPILGVEAILVSVISMLSDPNDDSPANIDAAVEWRNDKDGFKKHCRRIVRKSQE 166
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A7S2XJN9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJN9_9STRA)

HSP 1 Score: 261 bits (668), Expect = 5.920e-84
Identity = 124/165 (75.15%), Postives = 144/165 (87.27%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            M+DY +ELLRRQL +L KNP + VSVGL+DD N++ WE+LI+GP  TLYEGGFFKA+L FP DFPN PPTMTFVS+M+HPNVY DG+VCISILHPPGED  N QETA ERWRPILGVE I++SVIS+LSDPNDESPAN+DAAVMWR+DR AFKKK R +VRKSQ+
Sbjct:    1 MTDYGSELLRRQLADLAKNPIDLVSVGLTDDNNVYDWEILIMGPDGTLYEGGFFKARLVFPPDFPNMPPTMTFVSDMWHPNVYADGKVCISILHPPGEDAMNSQETAMERWRPILGVEQILISVISILSDPNDESPANLDAAVMWRNDRIAFKKKVRQVVRKSQE 165
[Close]
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Match: A0A448Z7I4_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A448Z7I4_9STRA)

HSP 1 Score: 261 bits (667), Expect = 8.110e-84
Identity = 123/165 (74.55%), Postives = 142/165 (86.06%), Query Frame = 1 
Query:   97 MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDREAFKKKSRLLVRKSQD 591
            M+DY TELLRRQL +L KNP + VSVGL+DD N++ WE+LI+GP  TL+EGGFFKA+L FP DFPN PPTMTF+SEM+HPNVY DG+VCISILHPPGED  N QE A ERWRPILGVE I++SVISMLSDPNDESPAN+DAAV WR+DR AFKKK R +VRKSQ+
Sbjct:    1 MTDYGTELLRRQLADLCKNPIDLVSVGLADDSNLYEWEILIMGPDGTLFEGGFFKARLTFPADFPNMPPTMTFISEMWHPNVYEDGKVCISILHPPGEDAMNSQELAIERWRPILGVEQILISVISMLSDPNDESPANLDAAVQWRNDRPAFKKKVRQIVRKSQE 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig806.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCV8_ECTSI5.850e-11496.41UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A836CP86_9STRA6.100e-9481.82Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A4D9D8W7_9STRA7.760e-9280.84UBC core domain-containing protein n=1 Tax=Nannoch... [more]
A0A067CW50_SAPPC4.120e-8976.69UBC core domain-containing protein n=3 Tax=Saprole... [more]
A0A1Z5JLS8_FISSO1.720e-8879.39Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacilla... [more]
A0A024UPR9_9STRA2.350e-8877.30UBC core domain-containing protein n=7 Tax=Saprole... [more]
A0A7S2AVY1_9STRA1.110e-8673.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CH94_PYTOL1.160e-8674.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2XJN9_9STRA5.920e-8475.15Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448Z7I4_9STRA8.110e-8474.55UBC core domain-containing protein n=2 Tax=Bacilla... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig806contigP-littoralis_Contig806:18256..27345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCV8
PFAMsUQ_con
Model size1140
Max annot lvl2759|Eukaryota
KEGG koko:K10575
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Exons6
Evalue3.48e-117
EggNOG OGsCOG5078@1|root,KOG0425@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-07_007090.1
EC2.3.2.23
Descriptionprotein polyubiquitination
Cds size504
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig806.4.1prot_P-littoralis_Contig806.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig806 18796..23103 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791653.6577158-UTR-P-littoralis_Contig806:18255..187951680791653.6577158-UTR-P-littoralis_Contig806:18255..18795Pylaiella littoralis U1_48UTRP-littoralis_Contig806 18256..18795 -
1680791653.7543588-UTR-P-littoralis_Contig806:23103..231201680791653.7543588-UTR-P-littoralis_Contig806:23103..23120Pylaiella littoralis U1_48UTRP-littoralis_Contig806 23104..23120 -
1680791653.7672822-UTR-P-littoralis_Contig806:27266..273451680791653.7672822-UTR-P-littoralis_Contig806:27266..27345Pylaiella littoralis U1_48UTRP-littoralis_Contig806 27267..27345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791653.670908-CDS-P-littoralis_Contig806:18795..189871680791653.670908-CDS-P-littoralis_Contig806:18795..18987Pylaiella littoralis U1_48CDSP-littoralis_Contig806 18796..18987 -
1680791653.6849132-CDS-P-littoralis_Contig806:19771..198391680791653.6849132-CDS-P-littoralis_Contig806:19771..19839Pylaiella littoralis U1_48CDSP-littoralis_Contig806 19772..19839 -
1680791653.7083023-CDS-P-littoralis_Contig806:20863..209661680791653.7083023-CDS-P-littoralis_Contig806:20863..20966Pylaiella littoralis U1_48CDSP-littoralis_Contig806 20864..20966 -
1680791653.7236016-CDS-P-littoralis_Contig806:21625..217231680791653.7236016-CDS-P-littoralis_Contig806:21625..21723Pylaiella littoralis U1_48CDSP-littoralis_Contig806 21626..21723 -
1680791653.7366915-CDS-P-littoralis_Contig806:23060..231031680791653.7366915-CDS-P-littoralis_Contig806:23060..23103Pylaiella littoralis U1_48CDSP-littoralis_Contig806 23061..23103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig806.4.1

>prot_P-littoralis_Contig806.4.1 ID=prot_P-littoralis_Contig806.4.1|Name=mRNA_P-littoralis_Contig806.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MSDYATELLRRQLQELNKNPPEGVSVGLSDDENMFMWELLIVGPADTLYE
GGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNVYPDGRVCISILHPPGEDK
FNEQETAEERWRPILGVEGIIVSVISMLSDPNDESPANIDAAVMWRSDRE
AFKKKSRLLVRKSQDAL*
back to top

mRNA from alignment at P-littoralis_Contig806:18256..27345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig806.4.1 ID=mRNA_P-littoralis_Contig806.4.1|Name=mRNA_P-littoralis_Contig806.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9090bp|location=Sequence derived from alignment at P-littoralis_Contig806:18256..27345- (Pylaiella littoralis U1_48)
TTTTGGAGGCACGAACTGGTCCTCGTCTTCTCGAGCAACCAAGAAGGGGA
AAACCCAACACCTCAGAGGCAGCAAGCAGGTGAGAAAAGAGAAGCCAGAA
AGAGATGAAGATAAAGAGGAGAGAAAAAGGGAACTGCATTGACGGAGCGA
GTTATAAACAGGGCACGAGCATCGCCGGTGGAAAATGGCACGCCGAAAGC
AAGCGGTGGTAACCCGCCGAGGCCACCCTCTCTGTCGCACCCACCCACCC
GCACCTTTGAGTGTGAATTTTTGCCATCTCTGTGCAGGCGCCCGGCGTTG
GGTGGCGAGGGATGCAGGCACAGCAGCAGTCGTTTTTTCGAAAAGGGCTT
TCGAGAGTTACGACTTCAAGACTGCGATACTTCGCGTACATTCAACCCTA
TGGTCACCTCGACCAGGCAGCCCATGGTCGCTGAACCGACGCTTCATCCT
TACGACGGAGAGTTGGGGGGTGTGGGGGGGTGGGGTTGCGCTTAAGCTCT
CTTGCAACCAACGATCCCATCTACTGTATGTATTTATCGTACACTTCGTA
CGTGATAACAGTGCTGTATGGACTAGGTGATACCACCAAAGAGCGCTGCA
TGGCAACAAGGCCTCGCAACTGACAGAAACAGAGGGCGCTACCTCTCCCT
TTTTTGTACAAGTATTTTTTTTGTATTTTTTTTGTACGGAGTATTTTTTT
GTGTTTTCGTTTCAGTCCGCCCGAAGACCTCGTCACAATCTGCTCGCATA
GAACAGCTCGACCGTGTACCAGACACTGGTTCTGCATTCTATATCACCAG
CTACGGTATGGTATTTTTCGTTCGTTCCTTCTGTTTGCTCGGGGACGTGC
TTCCGTCTCCTCGGGCTAATTTTGTTTTTCCTTGTTTTTTTTTTCAAAAT
CATCACGTGGCGCTGCCGTACCGTGAAAACACTCAAAATCTGTACCCCCC
ATCTACCTCTCTCTGCTGCTGTATACTTCCTTCACTGCTGTCCCGTACAG
CAGTTATGGCTTTGTAGCAGTTGTGGCGTTGTGGCCCGCTCCATAGCAAG
ACACGCCGCATGTATGGGTTCGAGCCTCCAACTCTCGAAATATTCTGGAA
CCAATCACCAGCGCAAGTCGTAATTTTTCATCTTTTACTTTTATCAACAC
TGCAACACAAGTTTCTCATATTTTTTAAACTTACCTGCACATGCCCCCTT
TTCAATCCAGACGAGGGTCTGGAGTGTAGTTGTTGCAACGGACGCAAAGA
ATAAGGTACGTCTACCAGTGTTTCTAAAACTCATCAGATAGTGTACCGTC
GCAGCTCCCCTGAGGGTACCAGGCTCAACAAGACAATGTGGTGGTCGTCT
CGTGTTTCCATTTTCCTGGGGGGCTGGCGCATCGGTCCAATTTTCAATTT
TGTTGAAGTCGTGGTTTTCATATTATCTTTCATTACACTCGCACTGCTGT
ATCGCATCATGTGAATCGGGGCTTCGTCATTCTTTCTCGGGCTGATTCAA
ATTGACCGCTGTCCCCGCTTTCTCTAGGTGGGTTCTCGACAACTCTCCCC
CCGCCATGTGTTGACCAAAACTTAAACTTCATAATCGACGAAGCGACAAA
CACGTAGACAACCGCGCAGGTTTAGCCTGCCCTGGCATGCTGCCGACGCG
GTGCACCCCGCGTGTTGTCAGAACCCGAACAAGAGCCACACAGCGGGCCC
CGCACGATGAACTCGACTCGCGCCGCCGCTGTAACCGCCGTTTCTCTTAC
ACTGTGATACGCGCACACGTTCTGCTGTACAAGCACTCCGCTCAAAAAGA
GAAATGTTACTATTAGTGTTTACAAGAACCCCGTACAGAGCAGCAGTGTT
CGTTGTCTTGTTTCCCAGTTCGGGGTCTGTTTCTCATCTACCACGTCATA
TCGCACGTATTTTATTGTTGCTCATTATTTCCCAGACAGCAGTATTTGAG
CGTCCATAATCCTAGATCCTCAACTCAGCTTTTTTTAGTCGCGGGCCCCC
AACTGCGCGTGATACCCTTAGCCTCGTTCGTTACCTGCTGTCGGTCCTCG
TCGAGGTGCTCTTCTGCGCGTGCCGTTGTTTGTCTATCTACACCTTCAAC
CTCATTTCATACGAGCATCATACTCCGAAATAGGAAGCTAAATGCCACCA
TTTTTGGATTCGCCATTTTGTTACTCGTTACCTGGCGGTAAGTTCACGTG
ATTCCCCAAAATAATGCACGCCATTTTCTATTTTTTTCAAATATAGAGCG
ATTCTAGAAGCAAGTGAACGCTTCGCCATTTCTTGTGGCAACCCGTTCAC
TTGCCTTGCTTTTAAGATGTGTTGTTTTTTTATTTACTCCCATGATTTTT
TTCACAGCGCGGGGGGGGGGAGGGTAAACACAACTCTGCGCAGGCAGGTA
GACTCCCGCGAGCATTCGTTTGTTTGTGTTACCGGGCTGCTCTGCCGGCA
CTCAAACGGTCGTGAAATAGTCACAGAACCGGTATCCTACTGCGTGTGCA
CAGCAGCACAAGTACACGTACGGCAGTTGTGGAGTGGCGGGCGCGCGCAG
CGCCCTTTCACTGTGATGCCGCACACGCACGGGGGCTTGTTGGAGAGGAC
TACTGCCACCGGGGCCTTTACGGCCCTGTTATATCATACATTCCGCCCAG
TTTGGCCTCCTACGCGGAATACCTCCGAGGGCAGACAGCAGTGGACTTAC
AATGATGCGTGTTTTGAGAAAGATCGTCTTAGGTGACCCCGGTTGGTCCG
CCCAATGTTCATCCCGAAAGGTGTAGACTTGGCGTCCAAGATAAGCAGGA
ACAACACACATCCTGCTGTCGTAATGTATGATACGAACTACCCACCCGTT
CCCTTACTTACGAGGTCTCGCGGCTACACACCATCGTGTCGGAGTACATC
GTGTGTTGTCGGGAGAGCTCCTTGTCCCATACTACACTGACGCGTGTTTG
TTGTCGATCGAGACACATGCGTGCATGTCCCATCCTATCCTGACTCTGCG
ATGCGGAAAACATGTCATGTTTCGAATGTACTTGTGTTGTTGTTCTAAGC
TGCTGCGGCGTGATGTGACACTTGAGGTGGACGGCGGCGCGAGAGAAAAG
AGGAATCCGTCTGTTGTGTTCCTCGCCAGGTTATTATTACCTTTATCTTG
CAGCGGTAACTGGCTTCGTATCGTGCCAGAGCGGCTGCGCGAGGGTGATT
GCAACTACGATGTATCGTATGATGGTCATCGTGGGGATAGCAAGCAAGAA
TCAACCCAAAATATTGGCAGATGCTTGGAGAAGCCTGTGGCATGATTCAT
TGCGTGTGTGTTGTCATCCCTTTCATTGGACGCCACTCTACACCTTTCGG
GTAGGTAGACGCTCCTACCGGGGTCACACAGGGGGAAGTCAACACAGGAG
TTTTTTTTTTCCTCCACTTCCCTCTGCGGTGCTTGCCTTTTTGGTTGAGC
TTTTATGGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTACG
ATCGGATTTTGTTTGCTCACGAATTGATCGCATGCGTGTGATTTATCATG
CACTTCGAATATCATTTTTCTGGTGCTGTCAGGGACAGCGCCACTGTGAT
ATCTGGTGTTCACGGCTGCCTCCTCAAATCCAAAAAGCAAGCACTGGAGG
CATATTTCGTCGTTGGAACACCCCGTGCTGCTGCCGCTGCTGGCAATAGC
AAAAGCGAGCACCAGAGGCGCACCTCTTCGCCGGAGTACCTGCTGCTGCT
GCTGCTGTCTCACTCTGTCTTTCTGTCTGTCTTGTCTATCTTGTGTGCAA
CCAATATATTGCCTCGGCGGCTGTCTGCTGTGTTGTGTGTTGCGTTACTC
CATCCGCGCCGTTCTGATCGTCGTTCTCATCGTGCGGGTGGTTTGTTTTA
ACCTTCAGCCGCATGCCACCCACAGCAATCACAGCTGCGCAGCGTAAAGT
GCAGCAGCTGCGCAGCGTAAAGTGCAGCCCCAGACTCTGTGAACACGGCT
GCAATATGGCCATACTGCTTGCTTCCTCGTATGTGTGACGTGTATTTAAG
ATCGAAGGAGCGTCATCTCGTGTACAAGGTGAGGACTACTGTAGTACTAC
TGCTGTCTCAAGTTTGTTGTTTTTATTTTTACGACAGCACCCTCATTGAA
AATTGCTGACCCCTCTTTTCTCGTTGGTCCCCGCTCCTCGTCCTCCCTCC
TCGGTTCCGCAACCCCTGCGCCCAGCAGGTAGCGGAGCAGTCATGTCTGA
CTACGCAACCGAGCTCCTTCGTCGGCAACTGCAGGGTGAGTAAGCCATGA
CCATACTCCCATGTGTGAAGGAATGTAGCCTCCCCCCCGAGCAGGAGAAG
CCATTCAGAGGTGGTTCGAACATGGTCACTCTCTGCCTTTTCTTGCACCC
CGCCAGAGGTGGCCTGGGACGATTGTCACCCGGATTATTTTATGGGTCAC
ACAGCAGGGGAGACGAAATTTATTGGGAAACGAGCGATGAAGCGTTACAA
TCATATGATACGAAGTCTATGTTTTTTTTTTTGCGTGGGTGGTTTTTGGG
GGTCGAGGTTGGGGGATGTGGCGCTTGTGCGTCCGTCTTTTCGTCCGACG
AACGAAGTGAACGAGCAAACGGTATTGATAACGATTGGGGGGGGAGATTA
CCTATTACGCTGCGGTGAAGCTAGGTTTTGCGTGTGGTACATTTTTGTTG
TCGGATTTTGGCACAAAGGAAGGACCCACCTCCAGGTGTGATGGATAGAG
GCCGTAACTTGATTTTTGACCTGGGGACCACCACCACCACTACCACCACC
ACTAAAACAGCAGCATTCTCCACAGGCGTACCACCATACACATGACGTGA
CTTGAGTGGGGGGAGTTTTGGTCTGTTTTCCTAGACTAAACGAGTGTTTT
TTGAGTTTATCATTTGTCGATGCGCAAGAAATGAAGACACAGGGAAACAC
GTTTGAAGACACATCTCTAGGTATTCTTTCCGGAAATAAGAGCTCTGTGC
GCCCACCCCCCGGCGGCCCGTGAATGCCTCGGTTCGCCCCCAAGACATTC
CCCGTTATAACCACTTTAGGGCGTCGCTAGCGGTCTCCTCGATATAGTCA
CGACCCACGACGGAAGTACTTGCGGATTTTTTTCCAACCCGACTCACCCA
AGCCGAAGGGCCGGGGTGGTTGTTTTGATGAGGCTTCTCGCGGCGACGTG
ACATCATCCCCTTCCCCCCCCCCTTCCGCCCTTCCGGATACTTTCCCGCG
GTGGGGACTGTAATAATTATGGCCCCGAACAAGGCCCTGACCCTCAACAG
CTTCTTTTTCGTTTTACGCTACTCGGCTCAAAAAAATGCTCTCATGACTT
TGCCTTATCCGTGGTGTGTGCCAGTAACAAGCTGCAATGTATCTTTGCCT
TTGAAAATTCGGCTTGTTGCTCACAGCTCATTCATTCCTTCACATCGATC
CATCTCACCTTCTACCCATCCCCCTCTTCAGCTTGGAAACTTTCCAGAGC
TGAGAAAGAACCCGCCCGAGGACGTGTTCGTGGGCCCCGGGGATGATGAC
AATATGTTTGTGTCACATCAATATATCTCACCTTCTACCCGTCCCCCTTT
TTCTGCATGGAAACGTCTCCAGAACTGAATAAGAACCCGCCCGAGGGCGT
CTCCGTCGGCCTGTCTGATGATGAGAACATGTTTATGTGGGAGCTGCTCA
TTGTGGGCCCGGCGGACACGGTGAGTGTGCTGCCGCTGCTGCTACTACTG
ATGCTAGGGTTGGTGTTTTTTCTGTCGAATTTTTCATTGCTTTTTTCGGT
TCAATTATCGCGGGACTGTTCCTCGCGTCCGCCCCCAATCCTCTTCCTGT
TGGGTACCCTCCTGCTGGTTGAACTGAGCTACTGGTTGCTTTAGCGGTTT
GCTGTTTTTCTCTCTCTGGTGCCAATAATCACCGCCGAAGGACACCATAA
AAACAAATATATTCAGCAAAACAAGAACGACTTTCTTGGCAGCAGTGGCG
GCGGCGATCTCGACGTACATACGGCTGAGTCGTTTCATGGTTACTCAGAC
GCAGGCAATGGACACAGCACGGCAGCAGCGCATGGGCCAGTACAGGGGCC
GATCTACCCCCCCCCCCGCCTTTCCCCCCCATTTTTCTTGTGTTGGAACA
TCTTTTACTCAACAATGCGCTCGACTATTTCCCGAACGCACACAGCCAAC
GCCGCCTGGTGTGACTTTCGTTGTACATAGGTTGTGCGTGATGTCTCCAC
TCCCAAACCGATCCCAGCTCGCCTCCATTCTACCGTGTACCCTATGATAC
CCGGTGTGTCGTGCTTGCATGTTTAATGTTTTGCGTTTTTCTGTCCTGTT
CGTATTGTTTTTTGTGCGTTTTTCATCAGTTGTACGAGGGGGGCTTCTTC
AAGGCCAAGCTAGAGTTCCCGAAAGATTTTCCCAACAATCCCCCGACCAT
GACGTTTGTCAGCGAAATGTTCCATCCCAACGGTGAGAAGTTTGTTCACG
AGTCTGTACATATGCTTTTCACAACTTTGTGTTTTGTAGTGGATATTTTT
TGTTTTTTTCCATGAGACCTCTCGGTAGTTTTACCGCAATAAACTTCCGC
GGTAATTCCAACGGTGATTGGCTGTCGGTATTTGATATAATTGGCCGCGA
GATTTTTTAGTAACCATTCGTCGCCGAACAGCAGAGCTTACTTTTCGAAG
TATGATGTCTACATATAATCGCAGGTTACCACGGGAGCATTACCACGGTG
GCCGATTACCGCAGATAAACCGTACTATTCGATACCGTGACGTGGAGGAC
CACGGTACTTAAATGTACTTATATACAACCAACCCAATATTCGACACCGA
AATGGCCACTATTTTATTTTTTTTTGGAAGCGGCGAGTTCCTCTCCGTCC
ACGTACACATTCCGCTCGCTCGATCCTCGGCACGAATCACGACGTTTTCA
TTGGCGGGGGCGAACCGGTTTTCCCAAGGTGGCAGACGTTGCACCCACAG
ACAGCTATTGGGACACGGTCGTGACATGGGTTTGGGAGACCTCTGTCATA
GGACTGCCAGTACAGGAGAGTCTACAAATGATACTTGAACTCTCGAAAAA
AAAAAAAACGAGTGTCGTGGTTTGAGAGAGGCGTTCTTGGCATGGCAAAC
ACATCTCTCAACAAAACCGCAACCGTGACTGAATCAAGAGGTGTACAAAG
ACGAACGTCGCATCTCGTGGCGAGAACGCGACGCGACAGCCGTCAACATG
AGAGTGACGCGCTCGCTTCTGTCTTGCCCGCCTACCGCCCTTGCCTGCCT
CCTGTGCGTCTGTGTTTTTCGTGTGTCCCGATGTCCGTGTGTCTTGTGTA
TTCGTGCGTATCTGTTTGCCCGTGTGTCCGTTTCGCTGTGACTGTCGTGT
CCGTTTGTGTCTGTGTCCGTGTTTCCGTGTGTCTCGTCCGTGCTTCTGGT
GTCGTCTCACGTGTCTCCCGTGACGAATCGGACGTGGGCGTTGGGGGGGC
ACGCAGTTTACCCCGACGGAAGGGTATGCATCTCCATTCTGCACCCACCG
GGGGAGGACAAGTTTAACGAACAGGTGCACGAACGGCCTGCCTTTCCTTT
TTCATTTTTGTGTCTCTGTTCCTCATGATGTATGCATCCATCCATCACCT
TCGCCAGTGAGCACAGCAGTTGCCTCTCTTCATTCTTTCTCTCTACAGTA
CCTACGCCTCTTCGTTCTTGTCTCTCTTGATCTTTCTGTACCCTGCTCCC
TTTTTCTCTCTCTTGTCCCTTTCTTTCTGTGTTACAGAGTGTGTCTCCTC
CCCCCCTCCCCTTTTTTCCTCTTTCTTCTGTCTCTCGCTCTCTCTTCGCC
TCTTGGTCTCTCCCACGGGTTTTTCCGCCGAAGGCACGGATAGGTTTGAC
TGCACGAAACTTGCTCCCTTTGCCGGCTGTACATACCCAAACACGGCAAT
AAGTGATACCGGTATCCTCTCACCAAGAGACATGCCGCAAGGAAGTCGCG
GGGCCACGCGGACGTCAGCCCCTCGTTTTCCTTCCCCAATGTTCATGTCG
AACATGATACAACGACAGAAACAGCCGTGGATGAAGCTGGCAGCATGGCA
CAGCCGCACAGCTGCAAAGTATTGTCCAAGTGGAAGCCGTTACTGTTCAA
ACCAAAAAAGAAAAAGAAAAAACTGATGCAGGCTCACACCAGGCACTTTC
GTCAGGGACACATCGACTTGGTTTAGACATGTAGGGGCGGGTAACGAGTC
CCCCCAGAAAAAGTCTGGGGCGGGGCGTAACGGTGGATGATAGCACGTAC
GTGTTACCTGCTGCGGTGACACTCTCCTGTCCGATTCGAACCATTCCGCC
GTGCGCAGGAAACGGCGGAGGAACGCTGGCGCCCAATCCTGGGCGTGGAG
GGGATTATCGTCAGCGTGATCTCGATGCTCTCGGACCCCAACGACGAATC
CCCGGCCAACATAGACGCGGCCGTGATGTGGAGAAGTGACCGCGAAGCGT
TCAAGAAGAAGTCGCGCCTGTTGGTGCGCAAGAGCCAGGACGCCCTCTAA
CGTGGTGGCGTCGTTGTGGGTGTGGTTGTCGTATTTGTGGATTGATCGGG
GTTGGCGTGGGGGAACTCTTTTAGTTGAGTTGGGTTTAGTTGGTGTTGGG
CTGGTGTTGGTGTTTTGGTGTTTTGTGTTCGTGTTTTTTTTCGTTTTTCG
TTTGCTGTTGTTTGCTTTTTGTTGGTCTCGTCACCCTCACACGCAATCGC
CAGCCAGCCTTCCAGCAAGAGCAGGCAAACTACTGTATCGAAAAGGAGGC
CGCCAGGGGGATGGGCGGTGAGGAGAGGGCGACGGCGATGGTGGCGGAGG
TTATCATGTGGCGAAGCTGGACACGGGAAGGATCGATTGGTGTCCCAGGA
TGAGTTTCGGTGATGCCACTGATTTGTGGAGTTTGTTTGGATGGGGAAGG
CGAAGGCTTGTATGATAGCTGGCTGGGGTTGTTGGTTATCGATGGACCGT
GGCCCGATTTTTTTTGCGTCGAGGCATATCCACGAACTACCGGGATCTGT
TGTTGGTTGATGGAATTTATAGGCTTGACTTCGCTTGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig806:18256..27345-

>mRNA_P-littoralis_Contig806.4.1 ID=mRNA_P-littoralis_Contig806.4.1|Name=mRNA_P-littoralis_Contig806.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig806:18256..27345- (Pylaiella littoralis U1_48)
ATGTCTGACTACGCAACCGAGCTCCTTCGTCGGCAACTGCAGGAACTGAA
TAAGAACCCGCCCGAGGGCGTCTCCGTCGGCCTGTCTGATGATGAGAACA
TGTTTATGTGGGAGCTGCTCATTGTGGGCCCGGCGGACACGTTGTACGAG
GGGGGCTTCTTCAAGGCCAAGCTAGAGTTCCCGAAAGATTTTCCCAACAA
TCCCCCGACCATGACGTTTGTCAGCGAAATGTTCCATCCCAACGTTTACC
CCGACGGAAGGGTATGCATCTCCATTCTGCACCCACCGGGGGAGGACAAG
TTTAACGAACAGGAAACGGCGGAGGAACGCTGGCGCCCAATCCTGGGCGT
GGAGGGGATTATCGTCAGCGTGATCTCGATGCTCTCGGACCCCAACGACG
AATCCCCGGCCAACATAGACGCGGCCGTGATGTGGAGAAGTGACCGCGAA
GCGTTCAAGAAGAAGTCGCGCCTGTTGGTGCGCAAGAGCCAGGACGCCCT
CTAA
back to top