mRNA_P-littoralis_Contig805.25.6 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig805.25.6
Unique NamemRNA_P-littoralis_Contig805.25.6
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: D7FSB3_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB3_ECTSI)

HSP 1 Score: 607 bits (1565), Expect = 5.490e-211
Identity = 371/508 (73.03%), Postives = 396/508 (77.95%), Query Frame = 1 
Query:   49 MSQDPPGWERHTSRRDG-ALFLHNPATGESQWFAGXXXXXXXXXXXXXXXXXXXXXXXXELPPPPADGSENQS----------------PFAQPSAE--PTPSSEKVKSWKEKILAAKAKTNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGDDMEVDAEIAGGVELLSPSDIAPAANILLEDVPSVSLRREELRKGCLQRFADANSEYGQMAGYSKTCRSCREDGMVVGLSGMFGRFLWVQHMRQTMALASGAMSRTSKLPPDPVFPSLE-DTDEKLVKELVEGKRSKSQAQRVLKELSGACRAASVELEVLLQKELPGLHTQTVVLEEEVPTSRGDMSMRHVTGKGARVPGPDPNASYKLRYTPAG-GRSSDRRDVSFAITGAHLLKTWTAYGRCVQGGPPVWDPEFLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQVSHE 1509
            M QDPPGWERH S+R G ALFLHNP TGES+WF G                        +LPP                          PF Q  +   P PS +KVKSWKEKILAAKA          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SGDDMEVDA+IAGGVELLSPSDIAPAA++LLEDVPSVSLRREELRK CLQRFAD N EYG+M GYSKTCRSCREDGMVVGLSGMFGRFLWVQHMRQTMALASG  +RTSKLPPDPVFPSLE + D+KLVKELVEGKRS+SQA+RVL+ELS  CRAASVELEV+LQ ELPGL +  VVLEEEVPT +GDM  R VTGKGARVPGP+PN+SY+LRY PA  G++S RR+ SFAITGAHL KTW+AY RCV G  PVWD  FLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLR LVSVDCECFASPLNCTLSR   FCSVAYDTDKFFGSEGNFFQSEY Q S E
Sbjct:    1 MWQDPPGWERHASQRGGGALFLHNPTTGESEWFTGWVQKTSKWYGRKYWFQPTTGRAEWDLPPSAXXXXXXXXXXXXXXXXXXXXXXXXPFVQQQSSDVPAPSGDKVKSWKEKILAAKA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDDMEVDADIAGGVELLSPSDIAPAADMLLEDVPSVSLRREELRKDCLQRFADVNEEYGKMIGYSKTCRSCREDGMVVGLSGMFGRFLWVQHMRQTMALASGESTRTSKLPPDPVFPSLENEIDDKLVKELVEGKRSQSQAKRVLQELSSVCRAASVELEVMLQAELPGLQSHVVVLEEEVPTPKGDMGWRPVTGKGARVPGPNPNSSYRLRYVPASAGQTSGRREASFAITGAHLHKTWSAYCRCVGGDSPVWDRNFLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRHLVSVDCECFASPLNCTLSR---FCSVAYDTDKFFGSEGNFFQSEYQQGSFE 495
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A6H5K9Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z5_9PHAE)

HSP 1 Score: 409 bits (1051), Expect = 1.490e-136
Identity = 266/418 (63.64%), Postives = 291/418 (69.62%), Query Frame = 1 
Query:   49 MSQDPPGWERHTSRRDG-ALFLHNPATGESQWFAGXXXXXXXXXXXXXXXXXXXXXXXXELPPPPA---------------DGSENQSPFAQPSAE--PTPSSEKVKSWKEKILAAKAKTNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGDDMEVDAEIAGGVELLSPSDIAPAANILLEDVPSVSLRREELRKGCLQRFADANSEYGQMAGYSKTCRSCREDGMVVGLSGMFGRFLWVQHMRQTMALASGAMSRTSKLPPDPVFPSLE-DTDEKLVKELVEGKRSKSQAQRVLKELSGACRAASVELEVLLQKELPGLHTQTVVLEEEVPTSRGDMSMRHVTGKGARVPGPDPNASYKLRYTPA-GGRSSDRRDVSFAITGAHLLKTWTAYGRCVQGGPPVWD 1242
            M QDPPGWERH S+R G ALFLHNP TGES+WF G                        +LPP  A                      PF Q  +   P PS++KVKSWKEKILAAKAK NA XXXXXXXXXXXXXXXXXXXXXXXX              SSGDDMEVDA+IAGGVELLSPSDIAPAA++LLEDVPSVSLRREELRK CLQRFAD N EYG+M GYSKTCRSCREDGMVVGLSGMFGR                        PPDPVFPSLE + DEKLVKELVEGKRS+SQA+RVL+ELS  CRAASVELEV+LQ ELPGL +  VVLEEEVPT +G+M  R VTGKGARVPGP+PN+SY+LRY PA  G++S RR+  FAITGAHL KTW+AY RCV G PPVWD
Sbjct:    1 MWQDPPGWERHASQRGGGALFLHNPTTGESEWFTGWVQKTSKWYGRKYWFQPTTGRAEWDLPPSVAAXXXXXXXXXXXXXXXXXXXXXPFVQQQSSDVPAPSNDKVKSWKEKILAAKAKANAAXXXXXXXXXXXXXXXXXXXXXXXXGD------------SSGDDMEVDADIAGGVELLSPSDIAPAADMLLEDVPSVSLRREELRKDCLQRFADVNEEYGKMIGYSKTCRSCREDGMVVGLSGMFGRCA----------------------PPDPVFPSLENEIDEKLVKELVEGKRSQSQAKRVLQELSSVCRAASVELEVMLQAELPGLQSHVVVLEEEVPTPKGNMGWRPVTGKGARVPGPNPNSSYRLRYVPAPAGQTSGRREACFAITGAHLHKTWSAYCRCVGGDPPVWD 384
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A6H5KCM6_9PHAE (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 7.970e-41
Identity = 78/87 (89.66%), Postives = 79/87 (90.80%), Query Frame = 1 
Query: 1243 PEFLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQVS 1503
            P  LRRLFCVLSRYETLSATSDGYQMAFPASGFRLLR LVSVDCECFASPLNCTLSR   FCSVAYDTDKFFGSEGNFFQSEY Q +
Sbjct:   34 PFQLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRHLVSVDCECFASPLNCTLSR---FCSVAYDTDKFFGSEGNFFQSEYQQAN 117
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A7S0LGR4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGR4_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 2.750e-13
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1 
Query: 1249 FLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFF 1479
            F   + C+L RYE L A   GYQ A  A+GF +LR  + V CECFASPLNCTL R   FCS   D D  FGS G+FF
Sbjct:    9 FHAAVMCLLLRYEALGA--HGYQAAVDAAGFSVLRARLGVSCECFASPLNCTLER---FCSAFPDVDTPFGSLGSFF 80
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A0L0GFF6_9EUKA (PCIF1_WW domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GFF6_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 3.790e-11
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 1 
Query: 1162 FAITGAHLLKTWTAYGRCVQGGPPVWDPE------FLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFF 1479
            F+++  H  K  + Y R  +GG  V D E      F+  +FCVL+RY+ L     GYQ A   + F +L+  + VDCECFASPLNC   R  +FCS   DTD  FGS G+FF
Sbjct:  268 FSLSRPHAAKLRSLYAR-TRGGKWV-DKEGSDNDRFVDAVFCVLARYDALGGA--GYQAALNEASFDVLKDKMRVDCECFASPLNC---RYGQFCSAFPDTDSPFGSLGSFF 372
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A196SNR9_BLAHN (PCIF1_WW domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SNR9_BLAHN)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-10
Identity = 81/291 (27.84%), Postives = 126/291 (43.30%), Query Frame = 1 
Query:  631 RFADANSEYGQMAGYSKTCRSCREDGMVVGLSGMFGRFLWVQHMRQTMALASGAMSRTSKLPPDPVFPSLEDTDEKLVKELVEGKRSKSQAQRVLKELSGACRAASVELEVLLQKELPGLHTQTVVLEEEVPTSRGDMSMRHVTGKGARVPGPDPNASYKLRYTPAGGRSSDRRDVSFAITGAHLLKTWTAYGRCVQGGPPVWDPE-FLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLN-CTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQ 1497
            + AD  +E G M+G SK+ +  +  G   G+S +  R+L +Q +        G   +   +P +P       +D+ L++E+ EG  S+  A+++  +   + +    E E L +K+       TV  +  V   R + ++     K   +        +K  Y                    HL   +       Q  PP  DP  F   L  +L RY T+S T  GYQMA P S F LL+    +  ECFASP+N C L     +CS   DTD  FGS+G+FF  E ++
Sbjct:   83 KLADVINECGGMSGDSKSAQRSKRLGTKEGISAIVSRWLMIQELY-------GTNDKEYPIPAEP------KSDKWLIREMKEGGFSEDVAKQIDSKFIESTKFV-YEKEFLAKKKEFKDSDLTVSFQPLVDNCRFEFTLPEEGKKEVTI--------HKTDYE-------------------HLKSLYE------QKNPP--DPSSFHACLLLLLLRYNTISGTVRGYQMALPTSVFELLQSKYHLQHECFASPMNSCALLNS--YCSRFRDTDAPFGSKGSFFDYEVDE 322
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A7S2V310_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V310_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.390e-10
Identity = 51/130 (39.23%), Postives = 62/130 (47.69%), Query Frame = 1 
Query: 1090 DPNASYKLRYTPAGGRSSDRRDVSFAITGAHLLKTWTAYGRCVQGGPPVWDPEFLRRLFCVLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFF 1479
            +P A     Y    G++  R      I   HL K    +    +G     + +FLR LFCVL RYETL     G+Q A P   F +L +   V  E FASP N   SR  RFCS   DTD  FGS G+FF
Sbjct:    2 EPGAEAAEAYAVCCGKAKLR------INSPHLQKMKALHQMYSRGAE---EGQFLRDLFCVLLRYETLQG--GGFQAALPGPCFDVLLRHFDVRMELFASPFN---SRYSRFCSAFRDTDSVFGSLGSFF 117
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A482S948_9ARCH (PCIF1_WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S948_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 2.660e-10
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1 
Query: 1270 VLSRYETLSATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSR 1413
            +LSRYETLS  S+GYQMAFP  GF  LR+   V+ ECFASPLNC  SR
Sbjct:    1 MLSRYETLSGKSEGYQMAFPDVGFAYLRETWGVNTECFASPLNCYNSR 48
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: C5KBX9_PERM5 (PCIF1_WW domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KBX9_PERM5)

HSP 1 Score: 69.7 bits (169), Expect = 5.730e-10
Identity = 38/97 (39.18%), Postives = 54/97 (55.67%), Query Frame = 1 
Query: 1240 DPEFLRRLFCVLSRYETLSATS----DGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQVSHEYRV 1518
            D +  +R++ +L RY TL  +      G+Q+A PA    L++    V  ECFASPLN T+     FCS+ YDTD+FFGS G+FF+       H   +
Sbjct:    7 DIDVSQRIWLLLHRYNTLFGSKCGEGRGWQLATPAEAMELMQVRYGVSHECFASPLNATMPS---FCSLFYDTDRFFGSVGSFFRLPTTDFPHACEI 100
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BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Match: A0A7J6NNL3_PEROL (mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NNL3_PEROL)

HSP 1 Score: 70.9 bits (172), Expect = 1.780e-9
Identity = 47/134 (35.07%), Postives = 67/134 (50.00%), Query Frame = 1 
Query: 1147 RRDVSFAITGAHLLKTWTAY------GRCVQGGPPVWDPEFLRRLFCVLSRYETL----SATSDGYQMAFPASGFRLLRQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQVSHEYRV 1518
            R+ +S+ I   +  K    Y      GR   GG      +   R++ +L RY TL    S    G+Q+A PA+   L++    V  ECFASPLN T+     FCS+ YDTD+FFGS G+FF+   +Q      +
Sbjct:  178 RQPMSYDIVAEYDEKLRERYQKEFERGRADTGG----SIDVSHRIWLLLHRYNTLFGSKSGEGRGWQLATPAAAMELMKVRYDVTHECFASPLNATMPS---FCSLFYDTDRFFGSVGSFFRLPMDQFPQSCEI 304
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig805.25.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FSB3_ECTSI5.490e-21173.03PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K9Z5_9PHAE1.490e-13663.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCM6_9PHAE7.970e-4189.66PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0LGR4_9EUKA2.750e-1354.55Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A0L0GFF6_9EUKA3.790e-1143.75PCIF1_WW domain-containing protein n=1 Tax=Sphaero... [more]
A0A196SNR9_BLAHN1.120e-1027.84PCIF1_WW domain-containing protein n=1 Tax=Blastoc... [more]
A0A7S2V310_9STRA1.390e-1039.23Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482S948_9ARCH2.660e-1066.67PCIF1_WW domain-containing protein n=1 Tax=archaeo... [more]
C5KBX9_PERM55.730e-1039.18PCIF1_WW domain-containing protein (Fragment) n=1 ... [more]
A0A7J6NNL3_PEROL1.780e-935.07mRNA (2'-O-methyladenosine-N(6)-)-methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig805contigP-littoralis_Contig805:89107..94534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSB3
Preferred namePCIF1
PFAMsPCIF1_WW,WW
Model size1531
Max annot lvl2759|Eukaryota
KEGG koko:K17584
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
Exons8
Evalue8.99e-212
EggNOG OGs28P6D@1|root,2QVT7@2759|Eukaryota
Ec32 ortholog descriptionPhosphorylated CTD interacting factor 1, WW domain
Ec32 orthologEc-20_004880.1
Descriptionnegative regulation of phosphatase activity
Cds size1530
COG categoryA
BRITEko00000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig805.25.6prot_P-littoralis_Contig805.25.6Pylaiella littoralis U1_48polypeptideP-littoralis_Contig805 89107..94534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791653.5013535-CDS-P-littoralis_Contig805:89106..892201680791653.5013535-CDS-P-littoralis_Contig805:89106..89220Pylaiella littoralis U1_48CDSP-littoralis_Contig805 89107..89220 -
1680791653.5131826-CDS-P-littoralis_Contig805:89864..900291680791653.5131826-CDS-P-littoralis_Contig805:89864..90029Pylaiella littoralis U1_48CDSP-littoralis_Contig805 89865..90029 -
1680791653.5256646-CDS-P-littoralis_Contig805:90624..908391680791653.5256646-CDS-P-littoralis_Contig805:90624..90839Pylaiella littoralis U1_48CDSP-littoralis_Contig805 90625..90839 -
1680791653.5371308-CDS-P-littoralis_Contig805:91550..916141680791653.5371308-CDS-P-littoralis_Contig805:91550..91614Pylaiella littoralis U1_48CDSP-littoralis_Contig805 91551..91614 -
1680791653.5487735-CDS-P-littoralis_Contig805:92222..923811680791653.5487735-CDS-P-littoralis_Contig805:92222..92381Pylaiella littoralis U1_48CDSP-littoralis_Contig805 92223..92381 -
1680791653.558926-CDS-P-littoralis_Contig805:92611..926841680791653.558926-CDS-P-littoralis_Contig805:92611..92684Pylaiella littoralis U1_48CDSP-littoralis_Contig805 92612..92684 -
1680791653.5684862-CDS-P-littoralis_Contig805:93118..937911680791653.5684862-CDS-P-littoralis_Contig805:93118..93791Pylaiella littoralis U1_48CDSP-littoralis_Contig805 93119..93791 -
1680791653.5779912-CDS-P-littoralis_Contig805:94467..945341680791653.5779912-CDS-P-littoralis_Contig805:94467..94534Pylaiella littoralis U1_48CDSP-littoralis_Contig805 94468..94534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig805.25.6

>prot_P-littoralis_Contig805.25.6 ID=prot_P-littoralis_Contig805.25.6|Name=mRNA_P-littoralis_Contig805.25.6|organism=Pylaiella littoralis U1_48|type=polypeptide|length=510bp
DRRQAQHTADLSSIGDMSQDPPGWERHTSRRDGALFLHNPATGESQWFAG
WVQRKSKWYGRDYWFQPTTGRAEWELPPPPADGSENQSPFAQPSAEPTPS
SEKVKSWKEKILAAKAKTNAAAAAATGGAAPAPPPRQEAGGGAGTARAIA
GAAEDEDAASSGDDMEVDAEIAGGVELLSPSDIAPAANILLEDVPSVSLR
REELRKGCLQRFADANSEYGQMAGYSKTCRSCREDGMVVGLSGMFGRFLW
VQHMRQTMALASGAMSRTSKLPPDPVFPSLEDTDEKLVKELVEGKRSKSQ
AQRVLKELSGACRAASVELEVLLQKELPGLHTQTVVLEEEVPTSRGDMSM
RHVTGKGARVPGPDPNASYKLRYTPAGGRSSDRRDVSFAITGAHLLKTWT
AYGRCVQGGPPVWDPEFLRRLFCVLSRYETLSATSDGYQMAFPASGFRLL
RQLVSVDCECFASPLNCTLSRRFRFCSVAYDTDKFFGSEGNFFQSEYNQV
SHEYRVCVF*
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mRNA from alignment at P-littoralis_Contig805:89107..94534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig805.25.6 ID=mRNA_P-littoralis_Contig805.25.6|Name=mRNA_P-littoralis_Contig805.25.6|organism=Pylaiella littoralis U1_48|type=mRNA|length=5428bp|location=Sequence derived from alignment at P-littoralis_Contig805:89107..94534- (Pylaiella littoralis U1_48)
GACAGACGACAGGCACAGCACACAGCAGACCTTTCCTCTATCGGAGATAT
GTCGCAAGACCCTCCAGGTACGACTCAAACGGTTCCAAGGGCATGGTGCG
CTTGTATTCGTATGCTCACATGCAGTGTATCCCCATTCTTGATCAAAACT
TTGATCTTACACATCAAGAACACAGCCGGGGTTACATGGTTAGGCCGCAT
CGTTAACGTCAACGATGGTAATATGATATCATAGCTATCGCATCAGCTTT
ACTGGTTCCTGCACACCGCCCGTGAACACCGCAACTCTATGATACATGTA
CATGAGACAGGGGGACTCACGCTGTTCTGAAGCAAGTACGCTCGACGTAT
CTTGCCGCTCGGCAGCATTTTCTTGAAAGCAAGCAACAAGCTTTGCCCGC
TGCCGAGCTGGAATGCATCAATCGTGGCTGATGGCGCAAGTAGAGACATC
AAATGATATGCTGGATTGCACTCAAGGACAGCAACAACAGCAGCAGAGGA
TAGAAGTAGCCTAAGGGCCTCTTAACAGCGGGGAACCCAACCCAACCGTT
TGTGACGCTATGATACGATGCTACTGCTTGTATTTTCATGCATGGCAGTG
AGATTGCATCAAACAACAACACTCATCCACGGGCTAGATTTTGGCGATGA
GCTAATGTGAGAATCAACAACATCAACAACTCAATCGATGCCCTCCCCCT
TCTCTGGTTATATCTAAACACCACTGCGTGCGTTCCCGTGCAGGGTGGGA
GCGCCACACCTCGCGCAGAGACGGAGCCCTCTTCCTGCACAACCCCGCTA
CCGGAGAGTCCCAGTGGTTCGCGGGATGGGTGCAACGAAAGTCAAAGTGG
TACGGCCGCGACTACTGGTTTCAGCCCACCACAGGAAGGGCAGAGTGGGA
GCTGCCCCCTCCCCCAGCAGATGGCTCGGAAAATCAGTCCCCGTTCGCGC
AGCCCAGTGCCGAGCCGACCCCGAGCAGTGAAAAGGTCAAGAGCTGGAAG
GAGAAAATTTTGGCAGCCAAGGCGAAAACCAATGCTGCTGCTGCTGCGGC
TACAGGTGGAGCTGCTCCTGCCCCCCCGCCGCGGCAGGAAGCGGGGGGCG
GTGCGGGGACGGCACGAGCGATCGCGGGAGCAGCGGAAGACGAAGATGCG
GCATCATCGGGGGACGACATGGAAGTCGACGCCGAGATTGCCGGCGGGGT
GGAGCTGCTGTCTCCGTCGGACATTGCTCCGGCGGCGAATATTCTGCTGG
AGGACGTGCCGTCGGTGTCGCTCCGAAGGGAGGAGCTCAGGAAGGGCTGC
CTGCAGCGCTTCGCCGACGCCAACTCAGAGTACGGGCAGATGGCCGGCTA
CTCCAAGACCTGCCGCAGCTGCAGGGAGGACGGAATGGTGGTCGGCTTGA
GCGGGATGTTTGGAAGGTGTGCGTTGTTCGGGTGCCCTGTCTGCTTGCTG
TGTGATTCCGTGGCGAAAATTTGCTTGCCTATGATATGAGGTTCTTCGCT
CGCGGAGAATGGCTGTCGTCGAAAGGTTGTCGATGTTGAGCCCGTGTGCC
AGCAAGTTACGTTTCGAGAGATGTTAAATACATACGATATGCTTCGAAGT
ATTTTTTTTTGTGCGTGTGCACTTACGTTTGTTTAATATGATCCTGAGTG
CTCATGCAGACCCGATTCCTCTGAGCACGCCATGCATAGCTGACCGCTCT
GTGTCCTCAACACGAAACGACCACAACTGTACTGGCTGTACCCGAGGCGG
TTTAGGGTTTCCGCTCACATGGCGTTACCAGCACATGACGGCGTGTCCGT
CGATCCTGCGATGCTTGCATCTGTACTCTCGGACTGCGTGGCGTGTCCAG
GTTTTTGTGGGTGCAGCACATGCGTCAAACGATGGCGCTCGCTTCAGGAG
CGATGAGCCGAACATCAAAGCTAGTGAGTCGTTGTGTAACGTCATAATTT
CACGTCTTCGGCGATGATGCGTAGCTAGCTAATTGCTGTCGCTTGCCGCC
GAGATCCACGCTGTGCTTGTCATGGAAAGCCAACACCACACACCAGTGAG
CCCCCCCCCCCCCCCTTTCTTGTATTTGTCAAATGAAGACGGCAAGCAAA
AAAGGAGCACCCCCCCCCCCCTCCCCCGGCACGCGCTGTTCATTCCCTGT
CAGCCTCCGGACCCCGTATTTCCTAGCCTGGAGGACACGGACGAAAAGCT
TGTGAAGGAGCTGGTTGAGGGCAAGAGGTCGAAATCGCAGGCGCAGAGGG
TTTTAAAAGAGTTGTCAGGCGCTTGCAGGGCAGCGTCGGTCGAGCTGGAA
GTCTTGCTCCAGGTGCGATCGAGCCGTTCACTCCAGATGGTACATACACT
GAGTTGGAAATTGCCATTCGCGATAAATCGGGCAAAGACACCGTGCCACA
CATGGCGATGACGGTTTCAAGGCCAGGGTGGTGTTGTCGTAGTCCTTGGG
GTATGTGAACACCCAAAGAGTTGACGAGGCTGCCCTGATCATGCACACGT
ATCCTGGCTGGTGATCGGCGTTTCTTTTATTCTTTGGGTATCGAAATAGC
GATTAAGCTCTCGACGGTAGACGTTTTCCGGTTCGAACTATGCACCAATT
TAATGGACACCCATATCATACCCGCGGAAGAAGCCTCCCGCTTCCTGCTG
TGTGTTTTTATCTTTTGCCCCTCTCTCCGCCCGGTGAACCAAGCACGCAC
CATGTTCTCCTTCGCCTTCCACGTCTTTTGACGCTTTTCATAGCGTTTGA
AGTGCGTACCCGACCGGCGAAAGCAAACCGCTTCGGCTACCGTGCGACGA
CCGGCAGTCACCCTTTGCACCCGTGGTTTTCGTATTTTCTCCGGCTTACT
TTGCTGACATGCCCGTCATCGGCATGCCGTTGTTGTTGTACACAAACATG
CGACGCGTCCCGCCCTGCAGAAAGAATTACCGGGGCTGCACACCCAGACA
GTCGTCCTTGAGGAAGAGGTGCCTACGTCGAGGGGTAAGCGAGTGATCTC
GACTGATCGATCGACCGCCCCCCAGACAAGTAATTTTTCTTTGTGAATCT
ACAGAGCTCTGTTGGTATGTATGATAGCATGACCCTATCATATGATAGTT
GGAGTTGTATTTTCGTGGTGTTTTTTCGATGTACGACCGACGCCCAAAGA
ATAGCGGTCACACCCACGGATGTATGAGCGAAAGAAACTGCTGTGGTGTG
TTTGCTCTGGGTCTCGCTCATCCCCCACAATGGAGGAAGCAGCGTTCCAT
CGGCTGTTGTTGTTCTCGTGGGCGTCGTCGTCAAGACCGGCGAGTGCGGG
TGGACTATGGCGCCTCTCTCTTACGGAGGGGCCACTGCCTTCAAGGTTGA
GGGTATGATGACATGTGCTCTCTTGGGAGCGTCGTTGATGGATGGGAGGG
AAGACAGCACTCTGTGCTGTCATAGATTGGAAAACACCGTTCCCAATGAA
TATCTCCTCCCGCATGTCCTCCTCGCCACGCGCGTTCACTTTTTTTCCTG
CAGAGCAGTACGTTCACCCCCAACAAAACGAAATCCTCCTGTGTGTGGCT
TAAATCCTGTCTGTGGTGACCCCCACGACTGGTGCGCCCAATGTTCATCG
AAGGGTGTACCTAGACTGGAGGCTGGCGTCCAAAGTGTGTGTGAGATGAA
AAAACACACACAAACACACACATCACCGTTGCACGCCTCCAACAGGAGAT
ATGAGCATGCGTCACGTGACGGGGAAGGGGGCTCGCGTCCCCGGTCCAGA
CCCGAACGCCTCTTACAAGCTTCGGTACACCCCTGCCGGTGGGCGGAGCT
CGGATCGGCGAGATGTTTCGTTTGCCATCACCGGCGCGCATCTCCTCAAG
ACGTGGACCGCGTACGGTCGGTGTGTGCAAGGGGGTCCGCCGGTGTGGGA
TCCTGAGTTCGTGAGTTTCAAGGCATATCTCAAGTAAAATATTGGAGAGA
ATGTGGTGGTATTGAATAGGTCGATTTTCTCGCACACATCGATTGAGTTG
ACGTTCGGTGGACGAAAAGGCTGGGTTTGCTATTCTTTCTTTTTCTTTTT
GTACTTGTGACCATGGTATTTCGTTGTGCCTGCTGCTGCTGCATTTTGCA
CCTTTTCGCAACACTGGTCGCTTCATGTTACATGGTGGCGTGATTTACTT
GAAACGAATTGTTGTTCGAGACAAGCGGCGGGCGTCTGTTTTGTTCCCTC
ATCCGTCTACGTGAGCGTGACGACGTCAAGGGTACCTATCACGATGGCGA
TGCCCCCTGTTGTTTGGCTTGCAACGTACCATATCATGCGAGCAGCCTCC
AGCCTCCTTCACCGCGGCCTATTCCTCCCCCCTCTATCAACGTGCCATCA
CATACTTCGTTCTCCTGCAACCCTATCTGATCAAAGGGACCACCCACTGC
CTCTGCACTGCTGGTGTACCAAACCGATCAACTTCTCGAACGCTCACTCT
GATGTGGTTTGTACCATTTTTAACGTGAACCAACGCGGTCCATCCCATAC
CCCAGCTGAGGCGCCTGTTCTGCGTCCTGTCGAGATACGAAACGCTGTCG
GCGACTTCGGACGGTTACCAGATGGCCTTTCCGGCCTCGGGGTTCCGCCT
GCTGCGTCAGCTCGTGTCTGTCGACTGCGAGTGCTTCGCCAGCCCTCTCA
ACTGCACATTGTCACGGCGAGTCGAAGAGATTTTTGGTTGTTGCGGTTGA
CCGTTTCATTCGTCCAAATACATCTTTCATATCATATACTTCGAAGGATA
CACGTGTTAAGAAGTGCATGATAGTCCTCACTCGGGCAAATGGTTTACCT
TCCACCCGACGGCTGAGCGAGTATCATTTGCACCGTGCTTTTCTACTTTG
TTTTTCGAAGAAGGTTGTAGATGCCCACTACTTGATACATTAGGGAAATG
AGGCCGTACATCAGAGAAATAAGGCCGTACAGCGTCGTCTCTCTTTCTCT
GTCTCTGCGTGTATAGCACGATTCTCTCGGGGGGCGGTTTAACCTTATGA
AGTTGGTTTCCAGATCAGTTCACAGGTGGTGAACGAAATAATAAAAAAAC
TCGGTGGCGGTTGAAACATGTGCATCGGAGTTTTCAAGGTCAAGGCACAG
AGTTCCGAAATGCGACAGTACTAACTAGAAGTTTCTCGAGCGTTTCACCG
CCCCGCCGCGAGATCGAAAAGGTACCTTATGATCGTCGTGAGGACCACAG
TTCGTACTGCATGAAATCTAATAGTCTTTGCTTCTTGAACACGTACTGTA
CTGCCGTTGTCGTTGCCGCTGCGTTGCCGTTGTCGTCGGTTCATATCATT
TGCTACCGTGCAAGTTCAGGTTCTGTTCTGTCGCATACGACACGGACAAA
TTCTTCGGAAGCGAGGGGAACTTCTTCCAATCGGAATATAATCAGGTATC
ACATGAATATCGAGTGTGTGTGTTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig805:89107..94534-

>mRNA_P-littoralis_Contig805.25.6 ID=mRNA_P-littoralis_Contig805.25.6|Name=mRNA_P-littoralis_Contig805.25.6|organism=Pylaiella littoralis U1_48|type=CDS|length=1530bp|location=Sequence derived from alignment at P-littoralis_Contig805:89107..94534- (Pylaiella littoralis U1_48)
GACAGACGACAGGCACAGCACACAGCAGACCTTTCCTCTATCGGAGATAT
GTCGCAAGACCCTCCAGGGTGGGAGCGCCACACCTCGCGCAGAGACGGAG
CCCTCTTCCTGCACAACCCCGCTACCGGAGAGTCCCAGTGGTTCGCGGGA
TGGGTGCAACGAAAGTCAAAGTGGTACGGCCGCGACTACTGGTTTCAGCC
CACCACAGGAAGGGCAGAGTGGGAGCTGCCCCCTCCCCCAGCAGATGGCT
CGGAAAATCAGTCCCCGTTCGCGCAGCCCAGTGCCGAGCCGACCCCGAGC
AGTGAAAAGGTCAAGAGCTGGAAGGAGAAAATTTTGGCAGCCAAGGCGAA
AACCAATGCTGCTGCTGCTGCGGCTACAGGTGGAGCTGCTCCTGCCCCCC
CGCCGCGGCAGGAAGCGGGGGGCGGTGCGGGGACGGCACGAGCGATCGCG
GGAGCAGCGGAAGACGAAGATGCGGCATCATCGGGGGACGACATGGAAGT
CGACGCCGAGATTGCCGGCGGGGTGGAGCTGCTGTCTCCGTCGGACATTG
CTCCGGCGGCGAATATTCTGCTGGAGGACGTGCCGTCGGTGTCGCTCCGA
AGGGAGGAGCTCAGGAAGGGCTGCCTGCAGCGCTTCGCCGACGCCAACTC
AGAGTACGGGCAGATGGCCGGCTACTCCAAGACCTGCCGCAGCTGCAGGG
AGGACGGAATGGTGGTCGGCTTGAGCGGGATGTTTGGAAGGTTTTTGTGG
GTGCAGCACATGCGTCAAACGATGGCGCTCGCTTCAGGAGCGATGAGCCG
AACATCAAAGCTACCTCCGGACCCCGTATTTCCTAGCCTGGAGGACACGG
ACGAAAAGCTTGTGAAGGAGCTGGTTGAGGGCAAGAGGTCGAAATCGCAG
GCGCAGAGGGTTTTAAAAGAGTTGTCAGGCGCTTGCAGGGCAGCGTCGGT
CGAGCTGGAAGTCTTGCTCCAGAAAGAATTACCGGGGCTGCACACCCAGA
CAGTCGTCCTTGAGGAAGAGGTGCCTACGTCGAGGGGAGATATGAGCATG
CGTCACGTGACGGGGAAGGGGGCTCGCGTCCCCGGTCCAGACCCGAACGC
CTCTTACAAGCTTCGGTACACCCCTGCCGGTGGGCGGAGCTCGGATCGGC
GAGATGTTTCGTTTGCCATCACCGGCGCGCATCTCCTCAAGACGTGGACC
GCGTACGGTCGGTGTGTGCAAGGGGGTCCGCCGGTGTGGGATCCTGAGTT
CCTGAGGCGCCTGTTCTGCGTCCTGTCGAGATACGAAACGCTGTCGGCGA
CTTCGGACGGTTACCAGATGGCCTTTCCGGCCTCGGGGTTCCGCCTGCTG
CGTCAGCTCGTGTCTGTCGACTGCGAGTGCTTCGCCAGCCCTCTCAACTG
CACATTGTCACGGCGATTCAGGTTCTGTTCTGTCGCATACGACACGGACA
AATTCTTCGGAAGCGAGGGGAACTTCTTCCAATCGGAATATAATCAGGTA
TCACATGAATATCGAGTGTGTGTGTTCTAA
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