mRNA_P-littoralis_Contig805.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig805.6.1
Unique NamemRNA_P-littoralis_Contig805.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig805.6.1 vs. uniprot
Match: D7FSB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB8_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.210e-86
Identity = 172/305 (56.39%), Postives = 201/305 (65.90%), Query Frame = 1 
Query:  586 VWRMLYIDPDIADPKLV----ARLLGGAASQALGGACVFDVATDIVEALADVRGGAMWVYRGVFINESLIRHRRLGRGKAADTSIQGKHLAQFLRQVGMSRTRIILLVAGDVDFDTADAGAHGLSAVLRKPFTKTGFWNILRGMYLGGEPTAADDPPPIPGSPQACHGQHPYSQQTGSRRPEGAPLETEAAAXXXXXXXXXXXXXXXXXXXXAVAVGGPAAMPMGAPVLTPSPYPACLGFTPFTHPMVSAYHLGAPSLIRPSQLHAGSRRKYTKIAPREEDKTGAGLSAPLLDGTSPDALVTADD 1488
            VW ML + P    P+ +    A LL  AASQALG ACVFDVATDIVEALAD+RG  M VYRGVFINESL RH++L +GKA D SI GKHL++FLR+ GMS  RIILLVAGDVDFDTADAG HGLSAVLRKPFTKTG  +ILRG+YL  EP +     P+  +P+      P+  Q  SR PEG PL      XXXXXXXX                  P+ + MGAP L  S YPACLGFTPFTHPM + Y+L   +L+R  +  A  RR+YT IAPRE+D+     SAP+LDG SPD    AD+
Sbjct:   53 VWTMLSLTPSAVIPRSMTTRTAELLESAASQALGWACVFDVATDIVEALADLRGDTMSVYRGVFINESLFRHKKLNQGKAPDKSILGKHLSKFLREAGMSSARIILLVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGAAAAPL-SNPEPLG--VPFPGQYRSRPPEGVPLAAXXXXXXXXXXXXGTT---------------PSTIHMGAPGLASSQYPACLGFTPFTHPMFNPYNLPL-ALLRSGKPKAWPRRRYTNIAPREKDEDLGDQSAPVLDGASPDVTAAADE 338
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig805.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSB8_ECTSI1.210e-8656.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig805contigP-littoralis_Contig805:12998..15870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1488
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionResponse receiver
Ec32 orthologEc-20_004930.1
Cds size1488
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791652.785645-CDS-P-littoralis_Contig805:12997..139881680791652.785645-CDS-P-littoralis_Contig805:12997..13988Pylaiella littoralis U1_48CDSP-littoralis_Contig805 12998..13988 -
1680791652.7980855-CDS-P-littoralis_Contig805:14276..146991680791652.7980855-CDS-P-littoralis_Contig805:14276..14699Pylaiella littoralis U1_48CDSP-littoralis_Contig805 14277..14699 -
1680791652.8102088-CDS-P-littoralis_Contig805:15796..158701680791652.8102088-CDS-P-littoralis_Contig805:15796..15870Pylaiella littoralis U1_48CDSP-littoralis_Contig805 15797..15870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig805.6.1prot_P-littoralis_Contig805.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig805 12998..15870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig805.6.1

>prot_P-littoralis_Contig805.6.1 ID=prot_P-littoralis_Contig805.6.1|Name=mRNA_P-littoralis_Contig805.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=496bp
MARTRGGGVISGASARSRRNTGKSSLAGARGQRCPALPKSSPISMSSTET
VAATKDATEDQALQLGRLSEGDCDKLQPQSRRSFTPGTRVTGDNPFTTGI
PGEVAAVVDGDDAADVLDAEFLRVFDDELGDGDIGINDDIEHSGLDDIVE
NIVKYPSVKMGESTTSGCFNSGANQSNTQRPTAVRKSPLSPPKVPVWRML
YIDPDIADPKLVARLLGGAASQALGGACVFDVATDIVEALADVRGGAMWV
YRGVFINESLIRHRRLGRGKAADTSIQGKHLAQFLRQVGMSRTRIILLVA
GDVDFDTADAGAHGLSAVLRKPFTKTGFWNILRGMYLGGEPTAADDPPPI
PGSPQACHGQHPYSQQTGSRRPEGAPLETEAAAAAARAAASAAASASRSS
LSAAVAVGGPAAMPMGAPVLTPSPYPACLGFTPFTHPMVSAYHLGAPSLI
RPSQLHAGSRRKYTKIAPREEDKTGAGLSAPLLDGTSPDALVTADD
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mRNA from alignment at P-littoralis_Contig805:12998..15870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig805.6.1 ID=mRNA_P-littoralis_Contig805.6.1|Name=mRNA_P-littoralis_Contig805.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2873bp|location=Sequence derived from alignment at P-littoralis_Contig805:12998..15870- (Pylaiella littoralis U1_48)
ATGGCACGCACAAGGGGAGGTGGTGTAATCAGCGGGGCGTCTGCTCGGTC
CCGTCGGAACACCGGCAAATCGAGGTGAGCCTTAAGGAATTTCTGAATGA
CTGTTCACCTCCGACCTCGAGATGCGACCCCTACATCTGACCTCTACAGT
ACTCGTAGTGTCTCTCCTTCTCGATGTTTTTGCACGACAGCAGCGTACGG
ATGGGAGGTTTGGTCATCGAAGAGTACATGAGCAATAGCGTTTGCCCCAT
TAAGCTATATCTACTCCAGCAGTACCACACTCCCACGTGAAGTTCAATGC
AAGCATAGGTACCATGTTTGGTGTTTCGATTTCTGTATTTCTTACCCCCG
ATTTACTCTGGTTTGCATACGAGTACTCGTACGAAAAATAATGCTGTTTT
ACCATGCCAGTGATATATCGGATGAATAACGGAACAGCCATTTAGATGGA
AATCGGGGTTGTTGCTCTCGACGATTATTCGCAATGGCCTATGGGGGTTG
TACTTGGGGGGTTGGTGTGCAGCGCACAAGTGGGATATACTAGAGTCTTT
GCATTGACTGATATTACACTTGAGGATGCCCGGCAATTCCCTTTTTTGTG
GTGGCACATCACATGGTAACTTCGTATCACGTAAATACATGGTTCTTTCT
TTCACCATGATGTTGGGTTTCTCGCTTTCTGGCTCTTGTTGACGCCTGAG
TCACCGCTGAAAATGACCGGGTAGATCTCACATCTATTGCCGTAGATGGT
TACCTTGTAGCGCCACTTTCTCGCGATAAAAATGAAGACAACCGCAGAAG
GTGGGTGGAAGAAAAAAACTGCTGTGTGACCTTCCTTCTTTCTATAGTCT
ATGTCCCCTGCTGGTGCGCCCACTTGTACCGAAAGGTGTAGACTGGTGCC
CAGAATAGAGATGGGGCGTAAACACACGCACACCACACGCACACACCACG
AGAGTTTGCATCCAGACCCCATCTCAAGTTCTTTTCGAAAAACGAGCATA
ACATTTTTCAGGTGTAGGGTCCGCCCCTCAGGTCAGCTAAAAAGCTGGAA
CATAACTCAGCGTACGATACTTCTCTGGTGTTTTTTGTGACCCACATGTG
AACCGCAAGAGCCATCCTCCCTCTTCTCCTGCTTGGTCTGTCCGTTGTCA
TCGTGAACGGTGCCGTAGCAGCTTGGCAGGAGCAAGAGGGCAAAGGTGTC
CCGCCCTTCCGAAATCATCTCCAATTTCAATGAGTAGCACTGAGACGGTG
GCGGCCACCAAAGATGCAACGGAAGACCAAGCTCTACAGTTAGGCCGTCT
ATCTGAAGGGGATTGTGACAAACTCCAGCCGCAGAGTCGACGCAGCTTTA
CGCCCGGGACTCGTGTAACGGGAGATAATCCGTTTACTACGGGTATACCA
GGAGAAGTGGCGGCAGTAGTGGATGGAGATGATGCAGCTGACGTCCTCGA
TGCTGAATTTCTTCGCGTCTTCGACGACGAACTCGGAGACGGCGATATTG
GCATCAATGACGATATTGAACACTCCGGCCTCGATGACATTGTTGAGAAT
ATCGTCAAATACCCCTCGGTCAAAATGGGCGAGAGTACTACCAGGTTCGT
GCGTGCAAGCTCGTCCTCAGTAAATTTCACTGCCTTTCGAACGTGGCCAG
AATATACAAGCGCCGCGAGTACGGGATTACCCAGATAAACGGTCGTGGAA
ATTCCGAGAGTGCGTGCTGAATTTCATCTGATGTATTTCAGGAAGCGACG
AGCACGGGAGCCACAGATATGATGATATGTGCCACCCTTCCACCGATCGA
TCTCGCCATCAGCACCGACGGCGTTAAACTTACGTAATCTAACATTCCAA
AGGTGTTTATTTCCTTCTCCTTCTGTCTCCAGCGGCTGCTTCAACAGCGG
TGCAAACCAGAGCAATACCCAGCGCCCTACTGCCGTGCGCAAGTCGCCAC
TTTCGCCACCAAAGGTCCCCGTGTGGCGCATGCTGTACATAGATCCCGAC
ATAGCCGACCCAAAACTTGTCGCGAGACTGTTGGGAGGCGCGGCTTCACA
GGCGTTGGGGGGTGCTTGCGTATTCGACGTGGCGACGGACATTGTGGAGG
CGCTAGCAGACGTTCGTGGAGGAGCCATGTGGGTTTACCGGGGGGTGTTT
ATTAACGAGTCTTTGATACGCCACAGGAGGTTAGGCCGAGGCAAGGCAGC
TGACACGTCGATCCAGGGCAAGCACTTGGCGCAGTTTCTGCGGCAAGTTG
GAATGTCAAGAACACGAATCATCTTGCTCGTGGCCGGCGATGTCGATTTT
GACACAGCCGACGCTGGTGCCCATGGCTTGAGCGCCGTCCTGCGAAAACC
GTTCACAAAGACTGGCTTTTGGAATATCTTGCGCGGCATGTACCTTGGTG
GCGAGCCGACCGCTGCTGACGATCCACCGCCAATCCCGGGATCGCCCCAG
GCTTGTCACGGCCAGCATCCGTACTCCCAACAAACAGGATCGAGACGGCC
CGAAGGGGCCCCACTAGAAACAGAAGCAGCAGCAGCGGCAGCAAGAGCAG
CAGCATCAGCAGCAGCATCAGCCAGCCGATCATCACTCTCAGCCGCAGTT
GCTGTGGGAGGACCAGCGGCGATGCCCATGGGCGCGCCCGTCCTGACACC
CTCTCCCTACCCAGCGTGCTTAGGATTCACGCCGTTTACCCACCCAATGG
TCAGTGCGTATCACTTGGGCGCTCCGAGCTTGATTCGACCAAGTCAGTTG
CACGCGGGGTCACGGAGAAAGTACACCAAGATCGCCCCTAGGGAAGAAGA
CAAGACTGGTGCCGGTCTATCCGCCCCATTGCTGGATGGCACAAGCCCAG
ACGCTCTTGTGACGGCCGACGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig805:12998..15870-

>mRNA_P-littoralis_Contig805.6.1 ID=mRNA_P-littoralis_Contig805.6.1|Name=mRNA_P-littoralis_Contig805.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1488bp|location=Sequence derived from alignment at P-littoralis_Contig805:12998..15870- (Pylaiella littoralis U1_48)
ATGGCACGCACAAGGGGAGGTGGTGTAATCAGCGGGGCGTCTGCTCGGTC
CCGTCGGAACACCGGCAAATCGAGCTTGGCAGGAGCAAGAGGGCAAAGGT
GTCCCGCCCTTCCGAAATCATCTCCAATTTCAATGAGTAGCACTGAGACG
GTGGCGGCCACCAAAGATGCAACGGAAGACCAAGCTCTACAGTTAGGCCG
TCTATCTGAAGGGGATTGTGACAAACTCCAGCCGCAGAGTCGACGCAGCT
TTACGCCCGGGACTCGTGTAACGGGAGATAATCCGTTTACTACGGGTATA
CCAGGAGAAGTGGCGGCAGTAGTGGATGGAGATGATGCAGCTGACGTCCT
CGATGCTGAATTTCTTCGCGTCTTCGACGACGAACTCGGAGACGGCGATA
TTGGCATCAATGACGATATTGAACACTCCGGCCTCGATGACATTGTTGAG
AATATCGTCAAATACCCCTCGGTCAAAATGGGCGAGAGTACTACCAGCGG
CTGCTTCAACAGCGGTGCAAACCAGAGCAATACCCAGCGCCCTACTGCCG
TGCGCAAGTCGCCACTTTCGCCACCAAAGGTCCCCGTGTGGCGCATGCTG
TACATAGATCCCGACATAGCCGACCCAAAACTTGTCGCGAGACTGTTGGG
AGGCGCGGCTTCACAGGCGTTGGGGGGTGCTTGCGTATTCGACGTGGCGA
CGGACATTGTGGAGGCGCTAGCAGACGTTCGTGGAGGAGCCATGTGGGTT
TACCGGGGGGTGTTTATTAACGAGTCTTTGATACGCCACAGGAGGTTAGG
CCGAGGCAAGGCAGCTGACACGTCGATCCAGGGCAAGCACTTGGCGCAGT
TTCTGCGGCAAGTTGGAATGTCAAGAACACGAATCATCTTGCTCGTGGCC
GGCGATGTCGATTTTGACACAGCCGACGCTGGTGCCCATGGCTTGAGCGC
CGTCCTGCGAAAACCGTTCACAAAGACTGGCTTTTGGAATATCTTGCGCG
GCATGTACCTTGGTGGCGAGCCGACCGCTGCTGACGATCCACCGCCAATC
CCGGGATCGCCCCAGGCTTGTCACGGCCAGCATCCGTACTCCCAACAAAC
AGGATCGAGACGGCCCGAAGGGGCCCCACTAGAAACAGAAGCAGCAGCAG
CGGCAGCAAGAGCAGCAGCATCAGCAGCAGCATCAGCCAGCCGATCATCA
CTCTCAGCCGCAGTTGCTGTGGGAGGACCAGCGGCGATGCCCATGGGCGC
GCCCGTCCTGACACCCTCTCCCTACCCAGCGTGCTTAGGATTCACGCCGT
TTACCCACCCAATGGTCAGTGCGTATCACTTGGGCGCTCCGAGCTTGATT
CGACCAAGTCAGTTGCACGCGGGGTCACGGAGAAAGTACACCAAGATCGC
CCCTAGGGAAGAAGACAAGACTGGTGCCGGTCTATCCGCCCCATTGCTGG
ATGGCACAAGCCCAGACGCTCTTGTGACGGCCGACGAT
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