mRNA_P-littoralis_Contig804.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig804.2.1
Unique NamemRNA_P-littoralis_Contig804.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig804.2.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.790e-14
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 EKWDSTLKLFDAALQLPKFDWFEASRTVGKKNGNGRFKTQEHEALEAAWTDPELKKHILLDLALYDHAVSVHNRQLAEYGLS 246
            E W++TL LFD+AL +P   W E     GK N + RFK ++ + L+ A +DPE+ KH+ LDL LY  AV + N+Q   YG++
Sbjct:  306 EDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIA 387
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BLAST of mRNA_P-littoralis_Contig804.2.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.110e-13
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 EKWDSTLKLFDAALQLPKFDWFEASRTVGKKNGNGRFKTQEHEALEAAWTDPELKKHILLDLALYDHAVSVHNRQLAEYGL 243
            E+W++TL LFD AL++P   W       GK+  + + K  E E L+ AWTD ELKK++ LDL LY+HAV V + Q   YGL
Sbjct:  380 EQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460
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BLAST of mRNA_P-littoralis_Contig804.2.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.420e-11
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 EKWDSTLKLFDAALQLPKFDWFEASRTVGKKNGNGRFKTQEHEALEAAWTDPELKKHILLDLALYDHAVSVHNRQLAEYGLS 246
            E+W++++ LFD ALQLP F+W   S +   +N +      +++ L A+ TDP LK+ + LD+ LY+HA SVH  QL+ YGL+
Sbjct:  241 EQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDS--KAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGLA 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig804.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G715_ECTSI6.790e-1443.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ3_ECTSI5.110e-1346.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQY7_9PHAE1.420e-1142.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig804contigP-littoralis_Contig804:15526..17744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G715
PFAMsSulfotransfer_2
Model size437
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.16e-16
EggNOG OGs2CYGC@1|root,2S47N@2759|Eukaryota
DescriptionSulfotransferase family
Cds size249
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791652.4060874-CDS-P-littoralis_Contig804:15525..155941680791652.4060874-CDS-P-littoralis_Contig804:15525..15594Pylaiella littoralis U1_48CDSP-littoralis_Contig804 15526..15594 +
1680791652.420826-CDS-P-littoralis_Contig804:17376..175561680791652.420826-CDS-P-littoralis_Contig804:17376..17556Pylaiella littoralis U1_48CDSP-littoralis_Contig804 17377..17556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791652.4333038-UTR-P-littoralis_Contig804:17556..177441680791652.4333038-UTR-P-littoralis_Contig804:17556..17744Pylaiella littoralis U1_48UTRP-littoralis_Contig804 17557..17744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig804.2.1prot_P-littoralis_Contig804.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig804 15526..17556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig804.2.1

>prot_P-littoralis_Contig804.2.1 ID=prot_P-littoralis_Contig804.2.1|Name=mRNA_P-littoralis_Contig804.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
EKWDSTLKLFDAALQLPKFDWFEASRTVGKKNGNGRFKTQEHEALEAAWT
DPELKKHILLDLALYDHAVSVHNRQLAEYGLS*
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mRNA from alignment at P-littoralis_Contig804:15526..17744+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig804.2.1 ID=mRNA_P-littoralis_Contig804.2.1|Name=mRNA_P-littoralis_Contig804.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2219bp|location=Sequence derived from alignment at P-littoralis_Contig804:15526..17744+ (Pylaiella littoralis U1_48)
GAAAAGTGGGACTCGACGCTAAAGCTGTTCGACGCAGCATTACAACTCCC
AAAATTCGACTGGTTTGAGGTATGTATCTATTGTTCATTGTCTGTGTTTT
CGTGAATACGCATTAAGGAAATATTCCCGTTCAACTCGGCTTTGAATACC
CCCGACGAGGTTCGCCTGGCAAGAGCTAGACCTTGTCATCCACTGATGAT
GTTTTCTGTGTCGAGGTCCGTGGTAATTTTCGCTAGCGATTTCTCCTCTG
GCCGCGGGAGTTGTTCACAGTGTTTCGTGGGTCGGCTTTGATATTTTAAA
CGAAGTACAAACTATTTCCGTATCTTGTGCCACTCTGATCATGAATAAAA
AGTGGCCGGTACGGACCAAATGATTCATATCTAAATTATGGCCCACGAAG
AACATTTTAAACGCGGGTTCGAGCCCCGGAATCGCCGTGTTTGTTTTCGT
CCATTTTTTCAGTTTTTGTTTTTTCACCTTTTTTTTTCGACTTTTTGTTT
CGACTTTTTCTTCTCGTTTTTCGAGCTCTTTTATTTTTTCCTTCGGTGTG
ATAACCAGCTATTTAAAAATCTTCAAAGTAAGGGTTTCAATATCTTGCTG
GAACACTTATTAACCACAACAAAAAACCCGGAGTGAAAAATATCGTGTTT
CGCGTTCAGGGCGGTGGGTCCAAAATACCCCAACATTTGCAAGTTTTGCA
CCAAAAACCCAGAACCATCTTTGGGCGGAGCCCGGGAGGGGGCGTTTGAA
AGCCATCCCCGGGGTATTCCATCCAATGTCTCTACTTTGTTTCATCCCCC
AAGTGCCTCCAGTGATAAGTAGCAGTTTTGTTTGCAATAGCATCTATGCA
ATGGCTCGTTTGTGAAACCGGCCACTTATTACTGATCATCCGTAAAAGGT
CACTTATTCATGATCAGAGTGGTACCTTACATGCTGCACACGTCCATTAT
GTACCAAGGTATCTGTTTCGGTGCCGCTTTAAAAACTCCCAAGTAAGTTC
GGGATTCGAAAAAAGGGTCAACTAGAACTGCAAATATAGTATTCTGAAAG
TTTGCTGCTGAACGTGTATGTATGTTGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTGTGTGTGTTGTCATCCCATGTTCT
CTGGCACACTAGTCTGCAAACCACAGGCTAGGCCCATCGACGGGGTCACA
CAGGAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGT
ACATGCGTGAGATTTTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTC
GTCGGCGAAGCCGAATCTGATTTTACTAACAGCATAGCCGCTTTCAAAAT
ACATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTAT
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
GTGTGTGCGCATGCAGGGTTCTCGCAAGGTGGACAAAATACACCTTGCAG
CTTCAAGCACATGCCGTTTCACAAAGCACGGGTGTGCGACGGTGGGTGTG
CGTGTGCGTGTGCGTTGGCGTGTGCGTGTGCGATCGTGTGTGTATGTGCA
GGCGTCCCGCACGGTGGGGAAAAAGAACGGCAACGGGCGCTTCAAGACGC
AGGAGCATGAGGCGCTCGAAGCCGCGTGGACAGACCCGGAGCTGAAGAAA
CACATACTGCTGGACCTTGCCCTATATGACCACGCTGTCAGCGTACACAA
TAGGCAGCTCGCGGAGTACGGCTTGTCATAGCGCATGCATGCGTGGGATA
CATGCAGTCGAACAGCGGCAGTAGCAGTAGCATCTTTGTGTTGAATACTT
CGTATCATGGTGCGTTGCTCACTCAATTAGAGGTAGTAGTGTATTGTTTT
GTATAGGGCGTATTATGGTACATGGGATTCTTACACCTCTAGATTTTGCA
TTCTTTGGCTTACCGTAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig804:15526..17744+

>mRNA_P-littoralis_Contig804.2.1 ID=mRNA_P-littoralis_Contig804.2.1|Name=mRNA_P-littoralis_Contig804.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig804:15526..17744+ (Pylaiella littoralis U1_48)
GAAAAGTGGGACTCGACGCTAAAGCTGTTCGACGCAGCATTACAACTCCC
AAAATTCGACTGGTTTGAGGCGTCCCGCACGGTGGGGAAAAAGAACGGCA
ACGGGCGCTTCAAGACGCAGGAGCATGAGGCGCTCGAAGCCGCGTGGACA
GACCCGGAGCTGAAGAAACACATACTGCTGGACCTTGCCCTATATGACCA
CGCTGTCAGCGTACACAATAGGCAGCTCGCGGAGTACGGCTTGTCATAG
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