mRNA_P-littoralis_Contig803.13.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 149 bits (377), Expect = 8.130e-41 Identity = 79/152 (51.97%), Postives = 95/152 (62.50%), Query Frame = 3
Query: 402 QVRVLLEHVDVRGKYLDCCGSRRDAPSRLLTERGLCVTTNXXXXXXXXXXXXDATTDTFCDFLSNDTRRPDCTVSSPPYSHAFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYRGRPCCSVEAWFVWNKEGRG 857
+V LL +V + G LD CGS DA +L L V+TN DAT++ F S + +RPD V+SPPY +AF IL +AL V RVGVAFKLRL FLEP KTRG+WL +NPP VVVLPRATY GR C S EAWF+W+ G
Sbjct: 14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIWHLASDG 165
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.250e-18 Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 3
Query: 684 VGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYRGRPCCSVEAWFVWNKEG 851
+GVAFKLRL FL P K+RGRWL +NPPD +V+LPRATYR R C S E WFVW G
Sbjct: 1 MGVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVWETRG 56
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 85.1 bits (209), Expect = 2.970e-16 Identity = 60/158 (37.97%), Postives = 81/158 (51.27%), Query Frame = 3
Query: 384 YPSSSFQVRVLLEHVDVRGKYLDCCGSRRDAPSRLLTERGLCVTTNXXXXXXXXXXXXDATTDTFCDFLSNDTRRP-DCTVSSPPYSHAFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYRGR---PCCSVEAWFVWNK 845
Y + + V LL H+D+ G L+ C A S L E GL V T DATT + ++P D V++PP+ A IL +A VGVAF LRL +LEP K RG+WLAE+PP ++V LPR ++ G C+ AW +W K
Sbjct: 19 YFTPTSAVDTLLNHIDITGTLLEPCNGS-GAISNRLKEDGLSVITTDIADNPQD----DATTHQYW-----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTC-AWMIWKK 164
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 4.000e-9 Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 31 GVKPACGRSQHGKEAAAGGARVCFACWRPGSRDGSSSRWKHT*Q 162
G +CGR+ HGKEA GG +CFAC RPGSRDG SSRWKH Q
Sbjct: 4 GFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQ 47
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A2K8SJ36_9NOSO (Type I restriction-modification system, DNA methylase subunit n=1 Tax=Nostoc flagelliforme CCNUN1 TaxID=2038116 RepID=A0A2K8SJ36_9NOSO) HSP 1 Score: 62.4 bits (150), Expect = 1.060e-7 Identity = 57/174 (32.76%), Postives = 77/174 (44.25%), Query Frame = 3
Query: 372 PLGRYPSSSFQVRVLLEHVDVRGKYLD-CCGSRRDAPSRLLTERGLCVTTNXXXXXXXXXXXXDATTDTFCDFLSNDTRRPDCT--VSSPPYSH-AFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYR----GRPCCSVE---AWFVWNKEGRGK 860
PL Y S S+ LL HV + G + C G+ A + + TN DAT D L P+C ++PPYS A PI+K A R RVGVA L FLEP R +L + PP +V++LPR +R G + + FVW+K G+
Sbjct: 25 PLNFYESPSWFTTELLRHVPLSGVIGEPCVGNGAIASLLSVWPYTKQMWTNDIDPHKAANYHLDATLSDSWDSL------PECDWICTNPPYSEFASPIIKNAYRKARVGVAAFLLTSFLEPCDDRADFLQQYPPSLVLILPRFCFRKDKRGTRWATDNVTISCFVWDKRATGQ 192
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A2K8T2R7_9NOSO (Type I restriction-modification system, DNA methylase subunit n=1 Tax=Nostoc flagelliforme CCNUN1 TaxID=2038116 RepID=A0A2K8T2R7_9NOSO) HSP 1 Score: 62.0 bits (149), Expect = 1.340e-7 Identity = 58/173 (33.53%), Postives = 80/173 (46.24%), Query Frame = 3
Query: 372 PLGRYPSSSFQVRVLLEHVDVRGKYLDCCGSRRDAPSRL-LTERGLCVTTNXXXXXXXXXXXXDAT-TDTFCDFLSNDTRRPDCTVSSPPYSH-AFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYR----GRPCCSVE---AWFVWNKEGRGK 860
PL Y S S+ LL HV + G + C S L + + TN DAT ++++ F +D CT +PPYS A PI+K A R RVGVA L FLEP R +L ++PP +V+VLPR +R G + + FVW+K G+
Sbjct: 21 PLNFYESPSWFTTELLRHVPLSGVIGEPCVGHGAITSLLNVWPHTKQMWTNDIDPHKSADYHLDATLSESWAKFPDSDWI---CT--NPPYSEFASPIIKNAYRKARVGVAAFLLTSFLEPCDDRADFLQQHPPSLVLVLPRFCFRKDKRGTRWATDNVTISCFVWDKRATGQ 188
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: A0A2K8T3J8_9NOSO (Type I restriction-modification system, DNA methylase subunit n=3 Tax=Nostoc TaxID=1177 RepID=A0A2K8T3J8_9NOSO) HSP 1 Score: 60.5 bits (145), Expect = 4.710e-7 Identity = 57/177 (32.20%), Postives = 76/177 (42.94%), Query Frame = 3
Query: 372 PLGRYPSSSFQVRVLLEHVDVRGKYLDCCGSRRDAPSRLL----TERGLCVTTNXXXXXXXXXXXXDATTDTFCDFLSNDTRRPDCT--VSSPPYSH-AFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYR----GRPCCSVE---AWFVWNKEGRGK 860
PL Y S S+ LL HV + G + C S L TE + TN DAT + P+C ++PPYS A PI+K A R RVGVA L FLEP R +L + PP +V++LPR +R G + + FVW+K G+
Sbjct: 25 PLNFYESPSWFTTELLRHVPLSGVIGEPCVGHGAIASLLNVWPHTEH---IWTNDIDPNKQAHFHYDAT------LAESWEEFPECDWICTNPPYSEFASPIIKNAYRKARVGVAAFLLTSFLEPCDDRADFLQQYPPSLVLILPRFCFRKDKRGTRWATDNVTISCFVWDKRATGQ 192
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 5.660e-7 Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 52 RSQHGKEAAAGGARVCFACWRPGSRDGSSSRWKHT*Q 162
R+ HGKEA GG +CFAC RPGSRDG SSRWKH Q
Sbjct: 7 RAVHGKEAPGGGPGLCFACGRPGSRDGCSSRWKHVGQ 43
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: UPI001F5576D0 (hypothetical protein n=1 Tax=Nostoc punctiforme TaxID=272131 RepID=UPI001F5576D0) HSP 1 Score: 60.5 bits (145), Expect = 5.690e-7 Identity = 49/147 (33.33%), Postives = 68/147 (46.26%), Query Frame = 3
Query: 372 PLGRYPSSSFQVRVLLEHVDVRGKYLD-CCGSRRDAPSRLLTERGLCVTTNXXXXXXXXXXXXDATTDTFCDFLSNDTRRPDCT--VSSPPYS-HAFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVVLPRATYR 800
PL Y S S+ LL HV + G + C G A + + TN DAT D + P+C ++PPYS A PI+K A ++ R GVA L FLEP R +L ++PP +V+VLPR ++R
Sbjct: 21 PLNFYESPSWFTTELLRHVRLSGVIGEPCVGMGAIASLLQVWPYTQDIWTNDIDYTKAANYHHDATVSESWD------KFPECDWICTNPPYSDQAAPIIKNAFKLARCGVAAFLLTSFLEPCDDRADFLKQHPPSLVLVLPRYSFR 161
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Match: UPI000E0E050B (SAM-dependent DNA methyltransferase n=2 Tax=Microvirga TaxID=186650 RepID=UPI000E0E050B) HSP 1 Score: 59.7 bits (143), Expect = 1.110e-6 Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 3
Query: 582 DFLSND--TRRPDCTVSSPPYSHAFPILKQALRVGRVGVAFKLRLGFLEPKKTRGRWLAENPPDMVVV----LPRATYRGRPCCSVE---AWFVWNKEGRGK 860
DF D T D +++PP+ HA+ L+QA+R+ R GVAF +RL +LE K + PP +V V LP P S AW+VW ++ +G+
Sbjct: 90 DFTKADPNTALVDWVITNPPFDHAYEFLEQAMRIARRGVAFLVRLAWLESKGRYNSLWTQTPPSVVAVFTERLPMCLGGWDPKLSTATAYAWYVWVRDEQGQ 191 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig803.13.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig803.13.2 >prot_P-littoralis_Contig803.13.2 ID=prot_P-littoralis_Contig803.13.2|Name=mRNA_P-littoralis_Contig803.13.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=250bp MEAHLTSGPFWARLAEWYTAVGNEWSHERDLQSDPLLGECICTRPDCVRGback to top mRNA from alignment at P-littoralis_Contig803:95164..96987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig803.13.2 ID=mRNA_P-littoralis_Contig803.13.2|Name=mRNA_P-littoralis_Contig803.13.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1824bp|location=Sequence derived from alignment at P-littoralis_Contig803:95164..96987- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig803:95164..96987- >mRNA_P-littoralis_Contig803.13.2 ID=mRNA_P-littoralis_Contig803.13.2|Name=mRNA_P-littoralis_Contig803.13.2|organism=Pylaiella littoralis U1_48|type=CDS|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig803:95164..96987- (Pylaiella littoralis U1_48)back to top |