mRNA_P-littoralis_Contig12.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig12.45.1
Unique NamemRNA_P-littoralis_Contig12.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig12.45.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 6.440e-82
Identity = 170/305 (55.74%), Postives = 192/305 (62.95%), Query Frame = 2 
Query:   71 MRFQVTSFSYPPRSHAPPSRPRP----------LRVGAWSSSP--------TSTRRPCPRHHPSCRSYSALFSSVDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGGAMESEPRAGEQV-------------PVVEEGAAAVAGE----EQVDWDKAWASTRQKMEQEKRAAPAFSGRTQIVATKNDEGGYDYEEIAADGSRTMSGSKGSGAFGFADSGQVEEDGPGSIRRKEQEAVNLATTNQAFAGLFAVLIASLIFEVYIYMSGGISNGSTRFQNIGQPTTYDALPMPATPSLDDDLTV 880
            M FQ T+FS P R++ P  RP            L VG W SSP        +S RRP   H P    Y++LF S D+                              DGGA    PRA EQ+             P   EG AA AGE    EQVDWDKAWASTRQ+ME+EKRAAPAFSGR Q+VATKN++GGYD+EEI+ADGS  M G KG G FGFADS QVE DGPG IRRKEQEAVN ATTNQAFAGLFA+L+ASLIFEVY+YMSGGI+NGSTRFQ++GQPTTYDALP+PATP  D DL V
Sbjct:    1 MGFQATAFSSPIRANKPLQRPXXXXXXXXXXXXLGVGGWLSSPPRAISRTSSSRRRP---HRP----YASLFDSGDENNARDDSPNPGNADSQGEAPESESAPSSP-DGGAKPV-PRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVE-DGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV 295
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BLAST of mRNA_P-littoralis_Contig12.45.1 vs. uniprot
Match: A0A836C767_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C767_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 8.160e-11
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 2 
Query:  428 VDWDKAWASTRQKM-------EQEKRAA----------PAFSGRTQIVATKNDEGGYDYEEIAADGSRTMSGSKGSGAFGFADSGQVEEDGPGSIRRKEQEAVNLATTNQAFAGLFAVLIASLIFEVYIYMSGGISNGSTRFQNIGQPTTY--DALPMPATPSL-DDDLTV 880
            VDWD AWA+ +++M       +   RA           PAF+GR +I+ T N E GY Y EI A G  + +G +  G F   +     +D    I  KE++ V     +Q F    A++   L F + + M+GGIS+G++RF+++  P      A+P P+     DDDL V
Sbjct:  115 VDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAG-EADGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig12.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAU9_ECTSI6.440e-8255.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C767_9STRA8.160e-1132.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig12contigP-littoralis_Contig12:220673..223463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1837
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006320.1
Cds size867
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789506.6803343-UTR-P-littoralis_Contig12:220672..2206881680789506.6803343-UTR-P-littoralis_Contig12:220672..220688Pylaiella littoralis U1_48UTRP-littoralis_Contig12 220673..220688 +
1680789506.7259514-UTR-P-littoralis_Contig12:222509..2234631680789506.7259514-UTR-P-littoralis_Contig12:222509..223463Pylaiella littoralis U1_48UTRP-littoralis_Contig12 222510..223463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789506.6910453-CDS-P-littoralis_Contig12:220688..2213781680789506.6910453-CDS-P-littoralis_Contig12:220688..221378Pylaiella littoralis U1_48CDSP-littoralis_Contig12 220689..221378 +
1680789506.7046487-CDS-P-littoralis_Contig12:221807..2219231680789506.7046487-CDS-P-littoralis_Contig12:221807..221923Pylaiella littoralis U1_48CDSP-littoralis_Contig12 221808..221923 +
1680789506.7140603-CDS-P-littoralis_Contig12:222448..2225091680789506.7140603-CDS-P-littoralis_Contig12:222448..222509Pylaiella littoralis U1_48CDSP-littoralis_Contig12 222449..222509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig12.45.1prot_P-littoralis_Contig12.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig12 220689..222509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig12.45.1

>prot_P-littoralis_Contig12.45.1 ID=prot_P-littoralis_Contig12.45.1|Name=mRNA_P-littoralis_Contig12.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MGAMAFLQSHAGVGFQTGMRFQVTSFSYPPRSHAPPSRPRPLRVGAWSSS
PTSTRRPCPRHHPSCRSYSALFSSVDDDSGDDGNASNTPGGQKTPDDDDD
AAVGGTSDGGAMESEPRAGEQVPVVEEGAAAVAGEEQVDWDKAWASTRQK
MEQEKRAAPAFSGRTQIVATKNDEGGYDYEEIAADGSRTMSGSKGSGAFG
FADSGQVEEDGPGSIRRKEQEAVNLATTNQAFAGLFAVLIASLIFEVYIY
MSGGISNGSTRFQNIGQPTTYDALPMPATPSLDDDLTV*
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mRNA from alignment at P-littoralis_Contig12:220673..223463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig12.45.1 ID=mRNA_P-littoralis_Contig12.45.1|Name=mRNA_P-littoralis_Contig12.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2791bp|location=Sequence derived from alignment at P-littoralis_Contig12:220673..223463+ (Pylaiella littoralis U1_48)
ACAGACCTCGCGGACAATGGGAGCGATGGCTTTCCTGCAATCCCATGCAG
GAGTGGGATTCCAGACGGGGATGCGGTTCCAAGTGACCTCTTTCTCCTAC
CCGCCCCGTTCACACGCGCCTCCTTCACGGCCGCGACCGCTTCGCGTGGG
GGCCTGGTCATCGTCACCGACGTCAACAAGACGTCCCTGCCCTAGACATC
ATCCGTCATGTCGATCGTACTCTGCGCTGTTTTCCTCCGTCGACGATGAC
AGCGGCGACGACGGCAACGCGAGCAACACGCCAGGAGGTCAAAAGACTCC
TGATGATGATGATGATGCTGCCGTCGGCGGAACCAGCGACGGCGGGGCGA
TGGAGTCTGAGCCAAGGGCCGGTGAACAAGTGCCCGTGGTCGAGGAGGGC
GCCGCGGCCGTGGCAGGAGAGGAGCAAGTAGACTGGGACAAGGCCTGGGC
GAGCACCCGGCAAAAGATGGAGCAGGAAAAGAGGGCGGCACCGGCCTTCT
CGGGACGGACGCAGATCGTGGCCACGAAAAACGATGAAGGGGGCTACGAC
TACGAAGAAATAGCCGCTGACGGCTCCAGAACGATGAGCGGCTCCAAGGG
AAGTGGGGCGTTCGGCTTTGCTGACAGCGGCCAGGTGGAGGAGGATGGGC
CGGGGAGTATCCGTAGGAAAGAGCAGGAGGCTGTAAACCTCGCCACCACG
AACCAGGTGGGCTGAGCTGGGTGTTTTTTGTTCAACTAGGGTCTGAGCAG
TAGACGGCATCCCCACCTAACGAGCACGCAATGCCGCTAGATAATTTTGC
CGGGGCGGTTTGTAAAACGTTTCCGCCGAATGATATGTCAAGTAGGACAG
GTCGTGAGGCACGCTTTTTTTTTGTGCATGTGTGTTGTCGATTCTCGGTC
GCGGCTACTGTCGGGTCGTCCTGCTCGAACACTTGGCCGCTTCGTCCCCA
CCGCCGTCGCATGTGACTTGTGTTTTTTTGCTTTGCTGACATGCATGCAG
CACCTTCTTCTCCGGCGACGTCGCTTGTCCTTGCGAGGGATAGAAACAGA
GGATACGGTGTGTGCTGACAATCGCTTTTCGTGGTCCTAACGATACATAA
CGCACCCTTTTTTGTACATGTCACTTGGTTCCCAGGCATTTGCGGGTTTA
TTTGCCGTTCTCATAGCATCCTTGATCTTCGAGGTTTACATCTATATGTC
GGGAGGGATCTCGAACGGATCGACGAGATTCCAGAACATTGGCCAACCCA
CGTGAGTAAACTTTACTCTACTGCTGTTTAACCACTTTGTGATGTTAAAA
ATGTCATCATTTTTCACACGGTCGAGGCCTCTAGCAACATCGGACTAACG
CTTAGGTTGGACAGCACACCCTTTGTTTGGTAGGGTTGGTGCCAGTGCAG
ATTAAAACTTCTAGGGTAGGCAAAGTCGCGAGGTGTAGTTCTCGCCCAAT
CGTAGCCGACAATGCACGTATTTGTGCCTCTAGCATTTATTCGCTTTTTC
ACGGCAGCCTTTGTTTGTCTGTGGACCAAACTGGAGCCGTCCCGGTGCGC
TCGCCTGTTCCCAAAAGTGTCCTCACCATCTGTATTGTACCGCGAATTTA
TTTATTTTTGTTGTGTCGGCTGTACGGCTTGCCAGACCTCGACAGCAGAG
TCATCAAGTGCTCTCCAGCCTGCTTGGGTGTTCAATGTTAATGTCAAAGA
CTTGTTGACCGTGCGGTGGTCGTTACCTCCCCCCAACCCCTCATCGTATT
CTGTTTCTCTGGGAACCCGTCAACAGAACCTACGATGCGTTACCGATGCC
GGCTACGCCATCCCTGGATGACGACCTGACCGTGTAATGGCGATGATGAC
GCCCACCCGACTCGGCTGCTGCCTTGAGACTATATTGATGGTGGTTGGAA
AAATGAAACTTCAGTCCTGTGAATGCCGCTGGACAGTTCAGCAGCCAAAT
GCGATTGTACCCTCTACACAAGTACTGCAAGAGCGCGGTGGCTGCAGTAG
GCATGTCGTGCCCGGCTGTTCTTTGCATCGAAAGTGTGATGCACCGGAAA
CTGTGCTGCCGGGTTGGACTTTCTCGTGGCGATGTCATGACTACACGCCC
GGCGCCAGCCTTCTAGGCTGTACCCCCCGTAGAATTGACGTAACGGTCTG
TCCTGCTCTCTTGATACTGGTTTGTGTGTATATATTTGTCGTAGCGACGA
GGGTGCGACGGTTGGTTTGATGCACTCCGTGGGCCCACGGCACCGCGTGG
TATTTGACAGTGGATTTGATGCACCGCCGTGGACTCCTCGCCCAGGGATC
GATCATTGTATGTAGGTAGGATTGTCCCTGGCAACTGTTTGAAAACCCGG
AACTCGTTGTTAGGTGGGAGAGGCGGACCGGGGGGTAGTCCTGATCGCGT
AGGTTTTTGTGTGACGATTTAATTCTCTTGGCAGAGGCACGTGTCTGGCG
CACGATCTCGGCTCAATACGGTGTCTCTCAGTCCCAATTTATTCTTTAGT
GCAGATACCCGCTGTCTGGAGCGATGTCCCCAAATATAAGTAATGTTGAG
ATGGTCCCCATCTGCTTGCGTCGAGCCAAGTCTGCTGATATATGTTGTGT
CCGAAGAGCGTTTTTCCTTCGTCGCGTAGCCGCATGGCGGAGGGAGCAAC
ATCAAAACATTATTTACGGTGTTCGGTATGCACAGGGTTTGTGCGCCTCT
CCTCGAGGTGCGAAGACAACTGCACCTACGCTGGAACGATTGACTCCACA
AATATATGACATCGTAGGGCTGCGTAGCAGCAGTACCGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig12:220673..223463+

>mRNA_P-littoralis_Contig12.45.1 ID=mRNA_P-littoralis_Contig12.45.1|Name=mRNA_P-littoralis_Contig12.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=867bp|location=Sequence derived from alignment at P-littoralis_Contig12:220673..223463+ (Pylaiella littoralis U1_48)
ATGGGAGCGATGGCTTTCCTGCAATCCCATGCAGGAGTGGGATTCCAGAC
GGGGATGCGGTTCCAAGTGACCTCTTTCTCCTACCCGCCCCGTTCACACG
CGCCTCCTTCACGGCCGCGACCGCTTCGCGTGGGGGCCTGGTCATCGTCA
CCGACGTCAACAAGACGTCCCTGCCCTAGACATCATCCGTCATGTCGATC
GTACTCTGCGCTGTTTTCCTCCGTCGACGATGACAGCGGCGACGACGGCA
ACGCGAGCAACACGCCAGGAGGTCAAAAGACTCCTGATGATGATGATGAT
GCTGCCGTCGGCGGAACCAGCGACGGCGGGGCGATGGAGTCTGAGCCAAG
GGCCGGTGAACAAGTGCCCGTGGTCGAGGAGGGCGCCGCGGCCGTGGCAG
GAGAGGAGCAAGTAGACTGGGACAAGGCCTGGGCGAGCACCCGGCAAAAG
ATGGAGCAGGAAAAGAGGGCGGCACCGGCCTTCTCGGGACGGACGCAGAT
CGTGGCCACGAAAAACGATGAAGGGGGCTACGACTACGAAGAAATAGCCG
CTGACGGCTCCAGAACGATGAGCGGCTCCAAGGGAAGTGGGGCGTTCGGC
TTTGCTGACAGCGGCCAGGTGGAGGAGGATGGGCCGGGGAGTATCCGTAG
GAAAGAGCAGGAGGCTGTAAACCTCGCCACCACGAACCAGGCATTTGCGG
GTTTATTTGCCGTTCTCATAGCATCCTTGATCTTCGAGGTTTACATCTAT
ATGTCGGGAGGGATCTCGAACGGATCGACGAGATTCCAGAACATTGGCCA
ACCCACAACCTACGATGCGTTACCGATGCCGGCTACGCCATCCCTGGATG
ACGACCTGACCGTGTAA
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