mRNA_P-littoralis_Contig802.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig802.9.1
Unique Name	mRNA_P-littoralis_Contig802.9.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig802.9.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig802.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig802	contig	P-littoralis_Contig802:33439..41699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	317
Hectar predicted targeting category	other localisation
Exons	4
Cds size	300

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791651.5013542-CDS-P-littoralis_Contig802:33438..33499	1680791651.5013542-CDS-P-littoralis_Contig802:33438..33499	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig802 33439..33499 -
1680791651.5154011-CDS-P-littoralis_Contig802:35203..35267	1680791651.5154011-CDS-P-littoralis_Contig802:35203..35267	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig802 35204..35267 -
1680791651.528653-CDS-P-littoralis_Contig802:36155..36295	1680791651.528653-CDS-P-littoralis_Contig802:36155..36295	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig802 36156..36295 -
1680791651.542351-CDS-P-littoralis_Contig802:41648..41683	1680791651.542351-CDS-P-littoralis_Contig802:41648..41683	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig802 41649..41683 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791651.5545204-UTR-P-littoralis_Contig802:41683..41699	1680791651.5545204-UTR-P-littoralis_Contig802:41683..41699	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig802 41684..41699 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig802.9.1	prot_P-littoralis_Contig802.9.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig802 33439..41683 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig802:33439..41699-
coding sequence from alignment at P-littoralis_Contig802:33439..41699-

protein sequence of mRNA_P-littoralis_Contig802.9.1

>prot_P-littoralis_Contig802.9.1 ID=prot_P-littoralis_Contig802.9.1|Name=mRNA_P-littoralis_Contig802.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MGYDGGGTLGDRRLADLVMAERQWVATMVIMVWVKLMDPLQAVFEDFFLL
VKMIALVIGKLVKSFLPLLGIIYVSWAFARYTLLGELESLMSSIPSALAT

mRNA from alignment at P-littoralis_Contig802:33439..41699-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig802.9.1 ID=mRNA_P-littoralis_Contig802.9.1|Name=mRNA_P-littoralis_Contig802.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8261bp|location=Sequence derived from alignment at P-littoralis_Contig802:33439..41699- (Pylaiella littoralis U1_48)
GGAGTACTTTGAGGATATGGGATACGACGGCGGAGGCACGCTGGGCGACA
GGTGATTATTTTTGTCCGAGATGCGGCTGGTGTGTGAGTTAATTGTCACT
CTCCTCGACGAACCTGCTTTGCCCATCACGCCAGATATGCATGGAAACAT
GCGATCAGATTTTACAGCTGCAATCGCTTTCGTCAATGTATTTTACATAC
ATTGAAGCATGCTTTCAGATCATGAAAAAGACTGGTGGAGTAAAGCCACG
CCAGATATGTATGGTTTAATGCAATCAGATTTTACAGCTGCAGTTGCTTT
CGTCTACATTTGGTATACTACATCACAACATGCTACGAGATCATAAAAAC
CTCCTCAAGTTTGGTCAGCAGACAATCCTGAACGCGAAATGTGGTACCAA
CCTGACCGCTGTCAGCAGCAGACCATGACATCCTCAGTTTTAGCTGAAGG
CTCTAATGGTGGGGCAAGGGGGCGAAAACATGCCCCGACCAGTGAATGAC
GTTGTATCACACCCTTTGAGTTCAATGAATATCAGGCCTTTCACAGTGAA
TCCTCAATACAGTATGTAAACCTTACAGTTATATTATTTCGACCATATCG
TCTTTACGGAACCCCAAGAAAGGTTTTGCAGTTTACTTTTTTTCAAATCC
ACGAATTGATTCAGTTCTTGCTGATTATTACTCGAGAGTGCCCCGACAGA
GCCGATTTCTTGCATAACCCAAGTAGTCAGGAAATATTTCGTTGGCCAAA
CTGAAGTGCGTTTTTCTCGAGTATTTTTTCGAGTCAGACTGTGAAAATGT
ACACGCATGTACTACGGACCACAACTTTCGATGAGCTCTATCCTCTCATT
CACCAAGTAAGTGGGGTCCCAGTCGGCCCAGAGGCAGGCCTGAAAAACCT
GCGAACCCGTATGTCTGGTGAAAACAAAAAAAACATATCATCGAAAGATA
CGTCATGTTCCATCAGTTCTATTGTAGATTCGTGCAATTCAGGTTCTAAC
CCGCAATATCGCGTCATAAACCGCTGCTGACTAAATTTTTGGCTGTCAAC
CTGAACCATCCTGTACAACAGCAGCGCTAATTTAGTACTCCGGATAGATC
ACGAATTCATAAGTATATTAGCAGACGGTAAACTAGCAGCACGGTCAATG
ATCACACATCTGCTGTGTTTAATTGAAACAAATGTGGCCCTACTCTCTGC
ACACATCTACTTCACAAAGTAGCGAGCGAATTACGGGTAATTGTGGAGTG
ATAGTCGAGCGTCGCGCTCTTAATCCTTAGGTGCTGGTTGATGTCTAGGG
TTAAGGGGTGCAAAAACATGTGGCTGTCTGTGAGTTCGAATGCTTATTTT
CTCTCCTCATGCAATTGGCAAAAAACATGAGATGTTCGTGCACTTGCTGT
ACGTGACAGTCATTTCGATCATATATTCGGTCGTGTTGCATGATGTGGTC
AGTGAAAAGTGTTGTGGTTGTTGTTGTTGTTGTCGTCGGTTTGTTGTCGT
TTTGTTGCTCTACTTGTTTTACCCATTCTCGTTTTTGTCGGTGATTTGTT
TCTCTTAACCTTGTTGTTACTTGCTCTGGTTCTTGTTATTGTTGTTGCTG
TTGGTGGTGATGTCGATATCTTGAAGCGGTCTTGCTGATGTTCACTATTG
ATGGTGATGTCGATGTCATTTAGTGGTCGTGCTGACGTTTACACACTTTC
TCATCGCTCGTTAGAAATACTTCGTATGGGCTACACCCACACGAGGAAAC
ATGCGGATCGAATCGAAACCCGTTTCACATTCACGTCTTGGCGTTTTGCG
GCGCGCGTTTCCCTCTCGTGCGGTGCATCAACGACAACGTAAACACAAGG
CTGGCGTTCCTTATGGAGTTCGCTGTGATTGTAATGGTGCTTGCGAACAT
AATGATTGAGAGGATGGAGCTCAGATGCCAGGTACGCGAGCCGCCTTGTG
TGCCTGATTTTTCTTTCTGCTCTGCTGTGCTCCACGCTCTCTACGAAGCG
ACGCTGTGAGAGTTTTTCATGAAACCCTCTCATATTGGTCACTAACTCTG
CCTTGCTCCGTGCGCTCGCAATTGTGTGAAAGACTCTTTACATGAAACTC
TCAGTACAGAGTGGGCCTGAAGCCTCAGAAGGTACTTTCGTCCCTGGACC
CCAAACAATAACGCCGTCGCAACTTCTACGGGTATGACAAAATATCTAAT
CGTTCTGTCCACACCTCAGACACGTCTACCACTTTTTCCCATTCCGCTCC
AGGTGGCAACATGCGTCTACCCGAACTGAGTCTTGTTCCAATTTTTCGCT
AGGAACGTGTGCATACAACCGCCTGTTTAAGACTTCGAAACAACTTTCAA
GCACGTTTCGCCCGCACAGTAAAGCTATTCGTGACCCTGTTAATGTTTTC
AGTTTTATTTTTCATTCATTTGACGTTGGTGTATGAAATTCTCCGTGCAC
ATGGTGGTCACATGGTTGACCGTTTATGCTGTCTAGCCCAGTTTTTCTGT
CCACTTCTATATCTGTGCGTGTGGTTTGATGAGTCATGTCTTGAACTTGC
TGTCGTGTGGGACGACAAAGGACGCTCATCTTCCACCGGTTATATCAGCA
CGGACTGTGCAGGAACTGGAAACAGGTCGAAACCCATTACCTGCTGATGA
AAACAGCAACAATACAACAACCACCACAACTGCAGCACCAAAGGCAGCAG
CAGCAGCAGCAGAAACACAGCAACAGCAACTGATGTTTCGTAAATTAAGG
GTAAATTTTACGGCTGCTGCTGCGGAATTTTCAAGCATTAGCTCACTTCA
TTCCATAATCTGAGCCCGCAAGCGAGGGGACGCTCGAAGAGCGTCTCCGA
ATTGAGGGAGCTTCATCATGTAGCAATGAAGGAGAGGCCTATGACCCACT
GCTGCCTCGAGACGCAGGCCAGCGAGCGGGAAAGCCTCTACAAGAGCACT
TTGCCCAAAGTTTCAATCCCGTTTGGCTTGTGAGGTCCCGGTGCTATCAG
GCGAATCGGTGTATACTGTACCCTCACATGTTCCAAGATGAGAACGGAGA
GTAGTAGACGGGGCACACACGGCGGCAAAGGGTGCAAGCGATCCGGAGCG
GCTTCGTTTGCTATCGGATATGTGTCGAAACTGAAAAGTGTGCTGATGGA
ATAGCTCGGGCACTTACACGATTCGGACTGGGTTGAAAAACGGGGTCTCG
CGACCGCTTGTGCGGAGCTACATCACGTTTGTACCAGGGAAAATTGCAGC
GTAGGGGAATTAAGCAAGCGCCTCGGCTGCTCGTAACTCAAGTACGGGGT
CTTGTAGTCGACATGCGCCGACGTCTCTCTAAGTTGAAAACTACACACCG
GCCGCATGCATGCCCATGACTCGGAACATCTATATTTTCTGCTTAGAGGA
TGGCGAAAGTTTCATCTTGCACGTTCTATTCGGGAAAATCCTGCGGTCTG
CCTCCAAAGCGGTAGGAAATAACGACGAATCAAGACTGCCGCGAGGTCTA
CGCGTTGGCCGCCATTTTAGCATACCAACAAGCAGCGGCGATCATGACGT
GGTCCCTTGTGGAGGGAGCAGGGTCTTGTTTCCGATTGTTTTGGACCATG
GAACGAAGTGCGCGGCGGCGTTGACGCCGGCGCAGATGACTACGAATCTC
CAAGCCCACTTGCGAGTGGCGAGTAGTCGATAAACGGTTCACGTTGTACT
CCTTCCGGGTAGGGGGCGGGCGAGCCATCACATTGACGGCACAGCAATGG
ACGCTCTTGTGGAACATGTTGGGTGGAAGTCGAAGCCGGTGGCACGCAGA
GTAGTCACCTTGGGTGAGAGCTTCTGGCTGATCGCAGCAGAAGGCCTCAT
TGATCCCAAACTATATACCTGGTACGAATTTAAGCGTCGTCGGAATATTA
CAGCCACTATTGTCGATCAGTCTTAACATTTCCCTATTTGCATCTGTCGG
CGGCAAGCGGTGGGACCGTATCTGTAGCCCTGCCACCAATATTCGGTCGT
TCCTGGCGCAGCTGTTAAATTAAACTTCGAAACGCTGAAAATAATCGTTC
GGCCTGCGTGTTGCTGTCCACATTATGCCCAGGGCCCGTACTACTTCCTT
AAATTTGCCAACATCTTCGACGTCGTGCTCATCGCTGGACATGGGGTAAT
CTTCTACTTTCGGGGCGCAAAGACTGCGGCCACGAGAGATCTGGACTTCG
AAAATCAAGAGCAACACGTTGATTTTAGGCAAGCCAGAGCGAAACCAGAT
ACCCTTGTTTATCAGTAGCCGGTATGGACGGTCGGGAATACGTGGCCGGT
TTCAGAAATGGGCCATTGCTTGAATGCCATCGCAACACAAGATGTCATCC
ATCACAGGAGGCAATTGGGGTGTGAAAACAAAAATCGATACGTTGAAAAG
AGGTCCCCGGAGACAGCTCTTGAACACCCCACTCCTCGGGCTCCTCGCGA
GGTGGACCTGGATTTCTGTGCAAAACTCGCCAATGTAGGGGTATTTTACA
TGAACCACCCTGAACGCAAAACACGAGATTTTTCACTCCAGTTTTTCGTA
GTGGTTCATCGGTGTTTACAATAGACGTTAAAACCCGTACTTCGAAAATT
TAAACGGGTTAACGTATCGAAGAAAATAAGGAACAAGCTTGAAAAGAGAA
AAAAGAAACGTTGAAAAAAAAGAAACGAAAAAAGACCAAAACAAAAAAAC
GATAAAAAAAGGACGGAAAAAAAAGAAACGAAACCGGGGCTTGAACCAGT
ACTTCACACACAGTAATGTGGTACTGGTATAATATGATTATGATCGATTT
AGTCCACACCGGCCACGTCTCCCCGATCAGAGGGGCATAAATAATGAGAC
GCTCACTCGATTCGAAGGATAAGAGAAGCTAGCACGTACGAGCTCGCACG
ATATTGTTGCAATACAGGTCTAGCTCTTGCTGAGAAGGAACTCGTAAAAT
AACACGATCGGCCTAATGCTCCGACAGAAACACATGATGCCATAGCACGA
TGAGCCAGCTAGCTCGTACTGGAACTCGCACGAAAACTACGCGATAGGCT
ACCGGCATGAGGCGTAGCAGCGGCCAGACTCTTCGTTGGATACAGTTATT
CGATCAGTCTAGCTAGCTCGCGCTAGAGGCCCACACTGACACGTGGGGTT
CCAGCAGTAAGCTTCCGGCTGAAAGACGAGCAGACCAAAATTTTAACTTG
CAATTTCGCGCAATTGAAAACAGCACAGCCCACAACGCCCTTTTCGTAGA
CGTACATACAGGGTACACAAACAAGACCGTTCTGGTCGACACGATATACC
CTGGATTCACGATGATCTAATGACACAAGGACAACCAACAAATCAACCCG
CCCCCCCGCTTCCGCCCGTCCGCCCCCTCCTCGGCGAACCGATCGACTTT
CCAGGCGTCTAGCAGACTTGGTGATGGCGGAACGACAGTGGGTTGCAACC
ATGGTGATCATGGTATGGGTCAAGCTCATGGACCCCCTTCAGGCGGTGTT
TGAGGACTTTTTTCTCCTCGTCAAGATGATCGCCCTCGTGATAGGTGTAG
TAACCTACCTGCTGGCGTTTGCGTGCTGCATGCTTGTTTGCTCCGTACTT
ATCTACACTTCGAAGTACTCCATATTTTCCGATCTACTTTCTAGGGTGTT
ACATTGGTCCTCTTGAATACTGTCTTCTGACGCGAAGTGAAAAGGCCAAG
GCTCGTGCAATATTTTGTTTGGCAAATTGAGTTGGTCGAGTTTCATATAC
ATAGGTAATCGACTATGGCCTCAAGCATGATGGTCAGACGTATTTGAAAT
ATTACTTCGGGACTTTTTTTGGTGCAGAATGTGTCTTAATACTCCGGAGT
ATATTTTAAGCATTGAGTTGTCTCGCGTCAATATCATAGTCGAACATGCC
CTCAAGTATGGTAGTCAAATATCATTGTAAGTATGGCAGCTGAACATTAC
CTACGATATATGACGTGAATATTACAGTAGTTGGAATATTGCTTCGGAAC
TACTTTTGCGAAAAAATCACATTTTTTCACTGAAACCGTGGGTGTCCATC
GCGACAACATGGTAGTTACATATGACGTTGCAGGCATGGCGTATATCTAG
ATGAGCTTGCAATGTAAAAACACTGCTGAACTTGGTTTTATAATTGTATT
ATGTACTTCGAATTTTTTTTTGTCGAGTAGGCCGTTGGTGTCCCTCGTGA
TGAGGATTTGGTGGCCAAGTAGTAGTACCTTCGAGGTACATATGAAATTT
ATATAGATGAACATGAAATAACACTTCGGAACTTCGCTGTGATAAACGCG
TGTCTTTTTATTTCGACCGCTCGTGTCTCTCGCGTTATGCGCTACCATGG
GATCTTCTATCCCACTTATTTTTGTCGGCCTTGTTTCGTGTTTGCGTCCT
ATCGACACCGCTGATGTTTCACTGATCAACAGGCAAGCTGGTGAAGAGCT
TCCTGCCCCTCCTCGGCATCATCTACGTATCGTGGGCCTTCGCGAGGTGA
CAATGAGTAGACCGACTTGAAGATACTTTACAAAAGTCATCACACAGCAA
AACGTTTGAGCAAGGCGAGGAACCAAAAGGAAAAAAATCGTATTTGGCTT
GAAAGTACTTTTTTTCGGAATGTAAAAATCGCAGAGGCCAAACTCTCCAA
ACCCATTTTCGCAAGTGTTCGCTTCCCTCACGGCAAAATGTTCAGGTCGA
TTTAAGATACAAATAATTGCATACAATCCCAACGTGCCGCAGAGGCCGAG
GAGGGTGTTTGATGTTGATTTTCGTCGCCAAAATCTACAGTAGCCCTGGT
CAGTCACAAGCCAGGCACAAGCACAAAAACGCTCCCTCTAGTGGTAAACT
AAAATGAAACGAAATGTTTCTACGGTAGCGTCCAGGGGGAACGGCGGCTA
TGATTCGGTGTGAGTGATGGCAAAGATGCCCCGAAGGGCGCCCACCGCAC
GTCGGGAACGTTGTTCGAGCTGATGCCAACACAACCGTTTATCCGAACAA
ACTTCCGCACAGGTGGACGCCACCCCCTATTTGCGGACGCCTCGCATGCC
CAAGTGCACTCTTTGTTTCATTTCTTTCGTCTACTGTGTCTGCTTCATTG
TTCATCTTTGTGTCTTTTTTCTCCTTGTCTTCTTCTCGGGCAGACACTTT
CGTCTGTGGATCCTATGTTTTTCCTTGTTTTATTTTCAATTTTTGTCGAG
CCTGTAGTTCTGTGATTCTTTGTTTTTTTACCACGACGGAAGACACGTCT
TAGATGTGTGGTATCGGTGCCTGTTTCTTATTATTTTTGCGCATGGCCTT
CTTTCTTTTCATTTGTTTACCTCCTAGTACGGTATGTGCCTGGTTTGTTA
CCACGGGCAAGTTGAAAAGTGGCGGTGGGCCATTGTAAGAGTCAACAGCA
GTCCCTGGTGAAGACCTTGTCAAGGGCGAAAATGCCGGTTTGGCCTTGAA
ACGAGCGACCTTGGGGCATTTATGACTTTAACAAGGCCTCAACAAGGGGT
GCGGATATGCTTCCCCTCAGGAGAGGCAGGATGGCGTCCACCTGTGATGA
ATCCGTGATATGTAAGCTGACCGTGCGTCTCGTGCGATTACCCCTTGAAT
ATCATTTGAGCTTCTGCTTGGCAATGTTTACTTTTAACAATGGCATCACG
TGGTGTAGTTCGACGTCTCCCCCGCAAGGAAAAAAAGAGCCATTTAGTGC
CGAAAAGGGTCAATTGCATCTCAAATATTTGTTTTGTTGAGAAATGTGCG
AAAGCACAGCGTTTTGTATTGGCTCACAACCTGTAATCTTGGACGGTCCG
TATTTTTTTCGACTGCTTTTGTGTTGATTGCTGATTCTCGCACTTCGGGT
ACGTAGGTATTTACCGACAGCGGGACGCCGATTTATGCTACTTGCAGGGA
TGCCGAAGAAATATTTTTGATACATTGGTTTCGAATTCGCGACTAATGAT
GGAAAATCAGAGGTTTTCGCTGGTGGATCTTTATAGAGCACTCGGGTACA
TGGCGTTTAGGGGATCGATGTTGCACTTGTCGTTATTATCTGCTGGTGTT
CACTCTTTCGGGTGGTTTACTGGAGATCGCTCGCACAGCGCATGTTTGCT
ACTGCACGCTTCGATAGGAGGTACCTTGTTCCAATTTGGTGTGCCCCCGA
TTTTACGCTAGATCATGCTAGTTTTGTTTTTTTTCTATGTTTTTCATCAG
GTATACTCTCCTCGGGGAGCTGGAGTCATTGATGAGCAGCATACCTTCGG
CGTTGGCCACC

Coding sequence (CDS) from alignment at P-littoralis_Contig802:33439..41699-

>mRNA_P-littoralis_Contig802.9.1 ID=mRNA_P-littoralis_Contig802.9.1|Name=mRNA_P-littoralis_Contig802.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig802:33439..41699- (Pylaiella littoralis U1_48)
ATGGGATACGACGGCGGAGGCACGCTGGGCGACAGGCGTCTAGCAGACTT
GGTGATGGCGGAACGACAGTGGGTTGCAACCATGGTGATCATGGTATGGG
TCAAGCTCATGGACCCCCTTCAGGCGGTGTTTGAGGACTTTTTTCTCCTC
GTCAAGATGATCGCCCTCGTGATAGGCAAGCTGGTGAAGAGCTTCCTGCC
CCTCCTCGGCATCATCTACGTATCGTGGGCCTTCGCGAGGTATACTCTCC
TCGGGGAGCTGGAGTCATTGATGAGCAGCATACCTTCGGCGTTGGCCACC