mRNA_P-littoralis_Contig802.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.8.1
Unique NamemRNA_P-littoralis_Contig802.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig802.8.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.480e-26
Identity = 64/118 (54.24%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:   43 RTPSCVDKAWSSKNEWPLLRLKEKAFVMGRDHLDLKSMAEEVEAAAALDGITEALDRWDRQSHHAAMKGELSPLPPIEALRKLLFLVTDNNSNDEDNGCSKFSQACWTLLRRKVLMHL 396
            R  S  DK         LLRLKEKA  +GRDHL+L S AE VEAAA L  IT+ALD WDR S HAA KGE SPLPP+EALRKL  L+ D        G ++ +  C TLLR  +LM L
Sbjct: 1014 RPSSEGDKGIEQMQARQLLRLKEKAATLGRDHLELASRAEGVEAAAVLASITDALDIWDRHSLHAADKGETSPLPPVEALRKLRQLLMDGEQRGNCGGKNQPTHVCRTLLRANILMSL 1131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMJ3_ECTSI2.480e-2654.24Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:29643..30988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMJ3
PFAMsAnk_2,Ank_3,Ank_5,PID,PKD_channel,SAM_1
Model size400
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00901,ko:K21413,ko:K21952
KEGG ReactionR02240
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons3
Evalue4.07e-27
EggNOG OGsCOG0666@1|root,KOG3599@1|root,KOG0507@2759|Eukaryota,KOG3599@2759|Eukaryota
EC2.7.1.107
Descriptiondetection of mechanical stimulus
Cds size396
COG categoryE
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.43508-CDS-P-littoralis_Contig802:29644..297941680791651.43508-CDS-P-littoralis_Contig802:29644..29794Pylaiella littoralis U1_48CDSP-littoralis_Contig802 29645..29794 -
1680791651.447163-CDS-P-littoralis_Contig802:30342..305071680791651.447163-CDS-P-littoralis_Contig802:30342..30507Pylaiella littoralis U1_48CDSP-littoralis_Contig802 30343..30507 -
1680791651.4598284-CDS-P-littoralis_Contig802:30907..309881680791651.4598284-CDS-P-littoralis_Contig802:30907..30988Pylaiella littoralis U1_48CDSP-littoralis_Contig802 30908..30988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.8.1prot_P-littoralis_Contig802.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 29645..30988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.8.1

>prot_P-littoralis_Contig802.8.1 ID=prot_P-littoralis_Contig802.8.1|Name=mRNA_P-littoralis_Contig802.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
GKGGHSERGVDSMGRTPSCVDKAWSSKNEWPLLRLKEKAFVMGRDHLDLK
SMAEEVEAAAALDGITEALDRWDRQSHHAAMKGELSPLPPIEALRKLLFL
VTDNNSNDEDNGCSKFSQACWTLLRRKVLMHL
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mRNA from alignment at P-littoralis_Contig802:29643..30988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.8.1 ID=mRNA_P-littoralis_Contig802.8.1|Name=mRNA_P-littoralis_Contig802.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1346bp|location=Sequence derived from alignment at P-littoralis_Contig802:29643..30988- (Pylaiella littoralis U1_48)
GGAAAAGGTGGTCACAGTGAAAGGGGCGTCGACTCCATGGGACGAACGCC
ATCGTGCGTCGACAAAGCTTGGTCGTCAAAGGTCAGGTTTTGCGTGTGCG
TGTTCATCTCACCTATTCTCGGCGCCAGGCTACGCCTGTGAAAATATACC
TGGTACTAAGTATGTGGGCTATTCAGCCAAGGTCGCACAGAGTAGGGAGT
CATCATGTTTTTATTTTATTATTGTTGGTGTGTTAAGACAAAAATGTATG
TGTTACGATGTGGATGTATAATATGCTCATTTCTTTTACCTTTTGTTGGC
CCACGGGCGAAGCTGGCATAAAAAATGAACAAATTTGTTTTTGGTTACAA
TGTGATGGTTTCTTCCTCACGTCTTGGATTACGAGTCGTGGCATGTAAAT
CTAATATCTCGCTTTTTTTTCGCCATTGGCGCTCTTTTTTTTTTTTCTCC
TGTGACCAATGGAAACGGACGGGATCCGCAGAATGAATGGCCGCTGCTAC
GCCTCAAGGAGAAAGCGTTCGTCATGGGTCGGGATCACCTCGACCTGAAA
TCCATGGCGGAGGAGGTGGAAGCTGCGGCGGCGTTGGATGGTATCACCGA
AGCTCTCGACCGCTGGGACAGGCAGTCCCACCACGCCGCAATGAAGGTAG
CGACGACAACAAACCGCTTTAATTTGTTTACAATGTTTTGCATTCCATGC
TGTTTTGTTTCTCTTCGATGGCTTTCATCGGAGGGTGGGAAGTCTCGTCA
CGCCCCAAAAACGAAGCGACGAAGCCAAAGTCGCTATTTCCCTTTTCTTT
CTTTCTTGTGGAATAATTTGATTGCTGGAACCGTCGTGTCCCTCAAAGAC
ATCTCAAGTTTGAGTCTTTACGGTTGCGTATAATGTTGAACGAAGTTTAC
TGGTTTGTTTTGATGATGCTTGTTGCAGGAAATGCCTCCGGTGGAAATAT
CGAAAATATACCAAGTAAAACGGTTCAGCAGACTTATTCCCGCCGTTTGT
TGCTTCTGCACTACTGGGGAGTTCGCACAGCAGTAGAACGCTTTATCTGC
GGCCAAATCAAGCAAAACCGGAAGATTGAGTCATACCGCGGCCGCACCAA
TGTGTTGAGGAGCCTAGTCTGAACATCGCCACTTGCCATTACCCAACCAG
AATCCTATCGGGGTTTGTTTTTCCTCCGAACCTCGCTGGCGCAGGGAGAA
TTATCCCCGCTTCCCCCAATAGAGGCGTTGAGAAAGCTGCTTTTTCTAGT
CACGGACAACAACAGCAACGATGAGGATAACGGTTGCAGCAAGTTCTCTC
AAGCCTGCTGGACCCTCCTGCGGCGAAAGGTTCTGATGCACTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:29643..30988-

>mRNA_P-littoralis_Contig802.8.1 ID=mRNA_P-littoralis_Contig802.8.1|Name=mRNA_P-littoralis_Contig802.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig802:29643..30988- (Pylaiella littoralis U1_48)
GGAAAAGGTGGTCACAGTGAAAGGGGCGTCGACTCCATGGGACGAACGCC
ATCGTGCGTCGACAAAGCTTGGTCGTCAAAGAATGAATGGCCGCTGCTAC
GCCTCAAGGAGAAAGCGTTCGTCATGGGTCGGGATCACCTCGACCTGAAA
TCCATGGCGGAGGAGGTGGAAGCTGCGGCGGCGTTGGATGGTATCACCGA
AGCTCTCGACCGCTGGGACAGGCAGTCCCACCACGCCGCAATGAAGGGAG
AATTATCCCCGCTTCCCCCAATAGAGGCGTTGAGAAAGCTGCTTTTTCTA
GTCACGGACAACAACAGCAACGATGAGGATAACGGTTGCAGCAAGTTCTC
TCAAGCCTGCTGGACCCTCCTGCGGCGAAAGGTTCTGATGCACTTG
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