mRNA_P-littoralis_Contig802.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.3.1
Unique NamemRNA_P-littoralis_Contig802.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.520e-24
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLRN 186
            LEWWRVK RE+P L  +ARRVLCIPA QAQSERVFSSA LVVTK R+R+DPENV LMVFLRN
Sbjct:  481 LEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 7.700e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLRNI 189
            L+ WR K+ E+P L  +ARRVL IP+SQAQSERVFS+A L VT  RSRL  ENVEL+V+LRN+
Sbjct:  484 LDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNV 546          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 76.3 bits (186), Expect = 3.250e-16
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    4 EWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLRNIL 192
            EWWR  +  FP L  +AR++LCIPA+   SER+FS A  +VTKKR+ L PENV+++VFL   L
Sbjct:   70 EWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFLNKNL 132          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.230e-16
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLR 183
            L+WW+   RE+P++  +A+R+L +PA+ A SERVFS ASL+ TKKR  L P+NV ++VFL+
Sbjct:   95 LQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLK 155          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.100e-15
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLRN 186
            L+WWRV+  +FP L  +ARRVL IPA+QA+SER+FS A  +VTK R+ L P  VEL+V LR+
Sbjct:  224 LDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRH 285          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.220e-15
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLR 183
            L+WW+   RE+P++  +A+R+L +PA+ A SERVFS ASL+ TKKR  L P+NV ++VFL+
Sbjct:  162 LQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLK 222          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.330e-15
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1
Query:   58 RVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFLRNIL 192
            RVLCIPASQ QSERVFSSA LVVTK R+R+DPENVELM+FLRN+L
Sbjct:  428 RVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVL 472          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-14
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 EWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFL 180
            +WW+V    FP L  +ARR LCIPA+   SERVFS+A L VT+ RSRL P++V +++FL
Sbjct:  109 DWWKVNGIRFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: A0A1A7ZCN3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A7ZCN3_NOTFU)

HSP 1 Score: 71.2 bits (173), Expect = 1.230e-14
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVF 177
            L+WW+  E  FPSL  +A+  LC+PA+   SER+FSSA  +V+KKR+ L PE+++++ F
Sbjct:   34 LQWWKSNEARFPSLASLAKSYLCVPATSTPSERLFSSAGNIVSKKRTSLSPEHIDMLTF 92          
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Match: UPI0011B399B0 (zinc finger BED domain-containing protein 1-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B399B0)

HSP 1 Score: 75.5 bits (184), Expect = 2.120e-14
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    4 EWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLDPENVELMVFL 180
            +WW+V  R FP L  +AR+ LCIPA+   SERVFS+A L VT+ RSRL PE+V +++FL
Sbjct:  527 DWWKVNGRRFPRLSKLARQYLCIPATSVPSERVFSAAGLTVTRLRSRLTPEHVNMLIFL 585          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.520e-2480.65Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI7.700e-1765.08Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1X7SR93_AMPQE3.250e-1653.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A7S3PTX0_9STRA6.230e-1652.46Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6H5JWI1_9PHAE2.100e-1558.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A7S3PUA6_9STRA2.220e-1552.46Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6H5JJV8_9PHAE2.330e-1584.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI0007B8209D1.170e-1454.24zinc finger BED domain-containing protein 1-like n... [more]
A0A1A7ZCN3_NOTFU1.230e-1447.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
UPI0011B399B02.120e-1455.93zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:6655..6849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.07e-19
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size195
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.144141-CDS-P-littoralis_Contig802:6654..68491680791651.144141-CDS-P-littoralis_Contig802:6654..6849Pylaiella littoralis U1_48CDSP-littoralis_Contig802 6655..6849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.3.1prot_P-littoralis_Contig802.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 6655..6849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.3.1

>prot_P-littoralis_Contig802.3.1 ID=prot_P-littoralis_Contig802.3.1|Name=mRNA_P-littoralis_Contig802.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=65bp
LEWWRVKEREFPSLGGMARRVLCIPASQAQSERVFSSASLVVTKKRSRLD
PENVELMVFLRNILS
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mRNA from alignment at P-littoralis_Contig802:6655..6849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.3.1 ID=mRNA_P-littoralis_Contig802.3.1|Name=mRNA_P-littoralis_Contig802.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig802:6655..6849+ (Pylaiella littoralis U1_48)
CTGGAGTGGTGGCGTGTAAAGGAGCGGGAGTTTCCCTCTCTGGGTGGAAT GGCTCGCCGGGTTCTGTGCATCCCAGCATCCCAGGCGCAGTCAGAGCGTG TCTTTTCGTCGGCAAGCCTAGTCGTGACAAAGAAACGCTCTCGACTTGAC CCGGAAAACGTAGAGCTCATGGTGTTCTTGCGTAACATTCTTTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:6655..6849+

>mRNA_P-littoralis_Contig802.3.1 ID=mRNA_P-littoralis_Contig802.3.1|Name=mRNA_P-littoralis_Contig802.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=195bp|location=Sequence derived from alignment at P-littoralis_Contig802:6655..6849+ (Pylaiella littoralis U1_48)
CTGGAGTGGTGGCGTGTAAAGGAGCGGGAGTTTCCCTCTCTGGGTGGAAT
GGCTCGCCGGGTTCTGTGCATCCCAGCATCCCAGGCGCAGTCAGAGCGTG
TCTTTTCGTCGGCAAGCCTAGTCGTGACAAAGAAACGCTCTCGACTTGAC
CCGGAAAACGTAGAGCTCATGGTGTTCTTGCGTAACATTCTTTCC
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