mRNA_P-littoralis_Contig802.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.2.1
Unique NamemRNA_P-littoralis_Contig802.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.950e-25
Identity = 74/155 (47.74%), Postives = 90/155 (58.06%), Query Frame = 1 
Query:  286 MTARPHGAAAEGGEDAIFDEPM--VGEELEGLMG-EPPSVTNESALALISKKHSTTHPETIRDFIVDTAARLAIESGCVDEAPLVLGGRITRRRNVRPTPVLSPRKVDLQRVLDRQTKRDGAPGYLLAKG*GTKVTTTLLQTCSASGRGTNVRRG 741
            MTARP GAA EGGED +FD+P+  VGEELEGL+   PPS ++   LA+I++ H+   PETIRDFI +TAARLA ESGC  EAPLV      + R    T       V  ++VLDRQ   DG PGY LAK    +V           G+G     G
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQ-HAIDSPETIRDFIEETAARLAKESGCQHEAPLVTW---KQDREAATTCGRLQAGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAG 151
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.810e-18
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 1 
Query:  262 AMVAERRSMTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPSVTNESALALISKKHSTTHPETIRDFIVDTAARLAIESGCVDEAPLV 531
            A+ +   SMTAR  GAA EG  D IFD+P+VGEE+EGLMG+PPSV+++  LA + +KH+   PET+R FI + A  LAI +GC    PLV
Sbjct:   50 AIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 138
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-18
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  283 SMTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPSVTNESALALISKKHSTTHPETIRDFIVDTAARLAIESGCVDEAPLV 531
            SMTAR  GAA EG  D IFD+P+VGEE+EGLMG+PPSV+++  LA + +KH+   PET+R FI + A  +AI +GC    PLV
Sbjct:   10 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSVAIGAGCPHSLPLV 91
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.730e-18
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  283 SMTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPSVTNESALALISKKHSTTHPETIRDFIVDTAARLAIESGCVDEAPLV 531
            SMTAR  GAA EG  D IFD+P+VGEE+EGLMG+PPSV+++  LA + +KH+   PET+R FI + A  LAI +GC    PLV
Sbjct:   53 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 134
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-15
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  660 ERVRNQSYYDTSTDLLCVGQGNQCPAGASMIAALKVFAGQGENGIPREIVSAMCKY 827
            +RVRNQ YYDT TDLL  G GNQC A   M+AALKVF+G+G  GIP EIV AMC Y
Sbjct:   23 KRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.430e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  660 ERVRNQSYYDTSTDLLCVGQGNQCPAGASMIAALKVFAGQGENGIPREIVSAMCKY 827
            +RVRNQ YYDT+ DL C G+GNQ  AG  M AA KVFAG G +G+P E+V AM +Y
Sbjct:   34 KRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.350e-12
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  241 PLRTNDSAMVAERRSMTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPSVTNESALALISKKHSTTHPETIRDFI 471
            PL    S   A   SMTAR  G+A EG  D IFD+P+VGEE+EGLMG+PPSV+++  LA + +KH+   PET+R FI
Sbjct:  679 PLNRCSSGGAAAPGSMTARSRGSAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAV-RKHAIESPETVRAFI 754
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.870e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  660 ERVRNQSYYDTSTDLLCVGQGNQCPAGASMIAALKVFAGQGENGIPREIVSAMCKY 827
            +RVRNQ YYDT+ DL C G+GNQ  AG  M AA KVFAG G +G+P E+V AM ++
Sbjct:  125 KRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5JVL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-8
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 3 
Query:  672 NQSYYDTSTDLLCVGQGNQCPAGASMIAALKVFAGQGENGIPREIVSAMCKY 827
            +Q YYDT+ DL C G  NQ  AG  M AA KVFAG G +G+P E+V AM +Y
Sbjct:   12 HQVYYDTAKDLGCFGSVNQLKAGEGMRAATKVFAGDGNDGLPTEVVKAMLQY 63
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BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Match: A0A6H5JL74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL74_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 7.640e-7
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  286 MTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPS 393
            MTAR  GAA EG  D IFD+P+VGEE+EGLMG+PPS
Sbjct:    1 MTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPS 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE1.950e-2547.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE2.810e-1853.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE3.170e-1855.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE3.730e-1856.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE1.300e-1567.86Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE2.430e-1260.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE9.350e-1253.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KG83_9PHAE2.870e-1158.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVL3_9PHAE1.490e-855.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL74_9PHAE7.640e-772.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:2651..4546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size906
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.0720747-UTR-P-littoralis_Contig802:2650..28871680791651.0720747-UTR-P-littoralis_Contig802:2650..2887Pylaiella littoralis U1_48UTRP-littoralis_Contig802 2651..2887 -
1680791651.112669-UTR-P-littoralis_Contig802:4282..45461680791651.112669-UTR-P-littoralis_Contig802:4282..4546Pylaiella littoralis U1_48UTRP-littoralis_Contig802 4283..4546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791651.0827858-CDS-P-littoralis_Contig802:2887..29501680791651.0827858-CDS-P-littoralis_Contig802:2887..2950Pylaiella littoralis U1_48CDSP-littoralis_Contig802 2888..2950 -
1680791651.094428-CDS-P-littoralis_Contig802:3940..42821680791651.094428-CDS-P-littoralis_Contig802:3940..4282Pylaiella littoralis U1_48CDSP-littoralis_Contig802 3941..4282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.2.1prot_P-littoralis_Contig802.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 2888..4282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.2.1

>prot_P-littoralis_Contig802.2.1 ID=prot_P-littoralis_Contig802.2.1|Name=mRNA_P-littoralis_Contig802.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=135bp
MVAERRSMTARPHGAAAEGGEDAIFDEPMVGEELEGLMGEPPSVTNESAL
ALISKKHSTTHPETIRDFIVDTAARLAIESGCVDEAPLVLGGRITRRRNV
RPTPVLSPRKVDLQRVLDRQTKRDGAPGYLLAKG*
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mRNA from alignment at P-littoralis_Contig802:2651..4546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.2.1 ID=mRNA_P-littoralis_Contig802.2.1|Name=mRNA_P-littoralis_Contig802.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1896bp|location=Sequence derived from alignment at P-littoralis_Contig802:2651..4546- (Pylaiella littoralis U1_48)
CTGCTGGGACTGCAACCAGGGCGGCGCTGTGAAACTGCCACGCCACAAGC
GCGGAGGAGTTGAAACGAATGGAGTCTAGCACTAGGTTAGATGCGAAGCG
GGCGCCCAAGTCCACACACGTACACCAAAGCTTCTCCCACAAAAGAGAGG
TAGACGCAACGAAACAGCAGAAAGCGGAGCAGCAGCAGCAGCAGCAGGAA
CAAAGCAGCAGCAGCAGCAGCAGCAGCCCGCGGGAGAGCGCCATTGCGGA
CCAACGACTCAGCCATGGTGGCTGAGCGGCGCTCCATGACCGCACGCCCC
CATGGTGCTGCAGCGGAGGGCGGGGAGGATGCCATCTTTGACGAGCCCAT
GGTGGGGGAGGAGCTAGAGGGTTTGATGGGAGAGCCGCCGAGTGTCACCA
ATGAATCCGCACTGGCTCTCATCAGCAAGAAGCATTCCACGACCCACCCC
GAGACCATCCGCGACTTCATCGTGGATACAGCTGCTCGGCTTGCGATCGA
ATCAGGTTGTGTAGACGAGGCGCCGCTCGTTTTAGGTGGAAGGATAACTC
GGCGCAGAAACGTGCGGCCAACACCAGTCTTGTCTCCTCGGAAGGTTGAC
CTCCAGGTGATTTCACCACAGCAAAAAAATCGTATGTTGTGCAGCCTACT
GCTGTATGAAAGTGTGCGCAAGAAAGAAAGTGGCACTCTATATTCGATAC
TGCTGTAGTCCTCTCTGACTTTCTTCATTGCCTGGTATGTTTTTGCTTGA
CCTGTTCACACGACCGACTGTACTAAACGTATCCTATGATACTTACCCGT
AATTTGTACGAGTGAATCACGTGCATAATAATTACCCGTAGTTTGTATTT
GTATGGTAGCATCCGGGTTGTCGTACAACACAGCACACCAGCAGCTGGAA
ACCCATCAGCCAGCCTACTACGTGATTGCCTCAAAACCAACCCATAGCTA
TACTACAGCATACCTGTACGACGTCCAAGGTCGGATGGTCCTGCTGTTTG
GCGTTCGTGTTCGTACTGTTTGCTGTGATATTAGTGCGCATACAGACCAT
CATAGCAGCAGCTACACCGCAATGTCAGAAGAGTGATATTTCTGCTGCTG
CTGTTGCTTTAGCTTTGGTTTCCTACGCCAACACCACCACCGCAGCAGCA
GTAGGAGCACCTGGATGAAAAGTGCTGCTACTGCTGCTGCTGTTGTTGTT
GTTATCTTCTTTCGTACGTCAACAAAAATCGCCATGAGCCAGTCAGCACT
CTGATGACAGCAGCAGCAGTACTTGTAGTAAGGTAAGATTGAGACGTCGC
TGGATATACACAGCCGGATATGTACAACTGGGACTGTCTATGGGCCGAAA
CGATAGGGTGGAGGGTAATGCGGGCAAATACTAACCGACACGCTCGGCTT
TCTTTTTTGCTGAAAAGATAGCAGTAATTTTTCCTCGTCCTTTCTTTCTT
GTGACATCGTCAAACGAAAGTTGTATAACTGCGGGAAACCCATGACCACG
GGCAAAGTATTTCAGCATGCTCTCACCTGCCCCCCCCCCTCTCCATCTCC
CCGCCCACTTCCCTCCCCTGTTCTTGATTGACTTTGAATTATTTAGCGTG
TGCTCGACAGGCAAACCAAACGCGACGGCGCCCCTGGTTACCTCCTTGCG
AAAGGGTGAGGAACCAAAGTTACTACGACACTTCTACAGACTTGCTCTGC
GTCGGGCAGGGGAACCAATGTCCGGCGGGGGCTTCCATGATCGCCGCTCT
GAAGGTGTTCGCGGGGCAGGGGGAGAATGGTATCCCCCGCGAGATTGTCT
CCGCCATGTGCAAGTACTAAAAACGGGCAGATGGTCTATGGTATTCCTGC
AGGCTTAGGTCTCATGTCGGGGTGTGCGATGGGGGTGAAACTTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig802:2651..4546-

>mRNA_P-littoralis_Contig802.2.1 ID=mRNA_P-littoralis_Contig802.2.1|Name=mRNA_P-littoralis_Contig802.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig802:2651..4546- (Pylaiella littoralis U1_48)
ATGGTGGCTGAGCGGCGCTCCATGACCGCACGCCCCCATGGTGCTGCAGC
GGAGGGCGGGGAGGATGCCATCTTTGACGAGCCCATGGTGGGGGAGGAGC
TAGAGGGTTTGATGGGAGAGCCGCCGAGTGTCACCAATGAATCCGCACTG
GCTCTCATCAGCAAGAAGCATTCCACGACCCACCCCGAGACCATCCGCGA
CTTCATCGTGGATACAGCTGCTCGGCTTGCGATCGAATCAGGTTGTGTAG
ACGAGGCGCCGCTCGTTTTAGGTGGAAGGATAACTCGGCGCAGAAACGTG
CGGCCAACACCAGTCTTGTCTCCTCGGAAGGTTGACCTCCAGCGTGTGCT
CGACAGGCAAACCAAACGCGACGGCGCCCCTGGTTACCTCCTTGCGAAAG
GGTGA
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