mRNA_P-littoralis_Contig802.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig802.1.1
Unique NamemRNA_P-littoralis_Contig802.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig802.1.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.900e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 2 
Query:  302 GVCSTCTDADMGRDFLAKKKHARKGPKICPRTQQEWTREVA 424
            GVCS+C +A +GR FL   +HARKG KIC RT+++W    A
Sbjct:  209 GVCSSCLEAGVGRQFLVDAQHARKGAKICSRTREQWGARAA 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE5.900e-553.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig802contigP-littoralis_Contig802:778..1407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.9745526-UTR-P-littoralis_Contig802:777..7801680791650.9745526-UTR-P-littoralis_Contig802:777..780Pylaiella littoralis U1_48UTRP-littoralis_Contig802 778..780 +
1680791650.9978654-UTR-P-littoralis_Contig802:1206..14071680791650.9978654-UTR-P-littoralis_Contig802:1206..1407Pylaiella littoralis U1_48UTRP-littoralis_Contig802 1207..1407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.9871192-CDS-P-littoralis_Contig802:780..12061680791650.9871192-CDS-P-littoralis_Contig802:780..1206Pylaiella littoralis U1_48CDSP-littoralis_Contig802 781..1206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig802.1.1prot_P-littoralis_Contig802.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig802 781..1206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig802.1.1

>prot_P-littoralis_Contig802.1.1 ID=prot_P-littoralis_Contig802.1.1|Name=mRNA_P-littoralis_Contig802.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
MAEHAQVLTADEVETWLHEIKTFSCWLNNGSVEKILGLAPGAIDLFLDSI
EPEQRGSTRRQTTKRKAGTAFTLPEYTSAGSNTDKNAELASDTDGATKNR
RVLDLHRRRYGAGFLGEEKARQEGAENLPKNPTGVDSGSRP*
back to top

mRNA from alignment at P-littoralis_Contig802:778..1407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig802.1.1 ID=mRNA_P-littoralis_Contig802.1.1|Name=mRNA_P-littoralis_Contig802.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig802:778..1407+ (Pylaiella littoralis U1_48)
GAAATGGCGGAACACGCTCAGGTCCTGACAGCCGACGAAGTCGAGACGTG
GCTACACGAGATAAAAACCTTTTCTTGCTGGCTAAATAACGGCAGCGTAG
AAAAAATTCTTGGCTTGGCGCCCGGCGCCATTGACTTGTTCCTGGACTCG
ATAGAGCCCGAACAGCGTGGAAGCACGAGGCGACAGACGACCAAGCGAAA
GGCTGGGACTGCTTTCACTTTGCCGGAATACACCTCTGCAGGCAGCAACA
CGGACAAGAACGCCGAACTGGCATCGGACACGGATGGAGCAACCAAAAAT
CGGCGTGTGCTCGACTTGCACCGACGCAGATATGGGGCGGGATTTCTTGG
CGAAGAAAAAGCACGCCAGGAAGGGGCCGAAAATCTGCCCAAGAACCCAA
CAGGAGTGGACTCGGGAAGTCGCCCGTAGAGGTCGCGAGAGCGCGTCGAG
GGAACTTTGATGCGTTTTTTTCACGACGTCCCCCTGGTAAAAGTTGCCCC
TGTTGTCTGGCCTGGTTTGGGTACACGAAATATTTCGCGGTTTGAAGCGT
TGCTCTCGAGCGGAATAAAGCAATAATTGACCTCTAAAAAAATCGATGAT
GTGTGTGATGTTTTTTTGTTCATGTGCTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig802:778..1407+

>mRNA_P-littoralis_Contig802.1.1 ID=mRNA_P-littoralis_Contig802.1.1|Name=mRNA_P-littoralis_Contig802.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig802:778..1407+ (Pylaiella littoralis U1_48)
ATGGCGGAACACGCTCAGGTCCTGACAGCCGACGAAGTCGAGACGTGGCT
ACACGAGATAAAAACCTTTTCTTGCTGGCTAAATAACGGCAGCGTAGAAA
AAATTCTTGGCTTGGCGCCCGGCGCCATTGACTTGTTCCTGGACTCGATA
GAGCCCGAACAGCGTGGAAGCACGAGGCGACAGACGACCAAGCGAAAGGC
TGGGACTGCTTTCACTTTGCCGGAATACACCTCTGCAGGCAGCAACACGG
ACAAGAACGCCGAACTGGCATCGGACACGGATGGAGCAACCAAAAATCGG
CGTGTGCTCGACTTGCACCGACGCAGATATGGGGCGGGATTTCTTGGCGA
AGAAAAAGCACGCCAGGAAGGGGCCGAAAATCTGCCCAAGAACCCAACAG
GAGTGGACTCGGGAAGTCGCCCGTAG
back to top