mRNA_P-littoralis_Contig801.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig801.13.1
Unique NamemRNA_P-littoralis_Contig801.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5KMW0_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW0_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.950e-52
Identity = 83/117 (70.94%), Postives = 97/117 (82.91%), Query Frame = -1
Query:    1 SAPPQSLLAPRPKLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKNPSVKALAAEGAVVVH 351
            S+ PQ L APRPK+GD FS S  LR+A+ERAML   R++++D R  GGH ++YRCSGAIIEKG KTTGGCQ+HVKANKRADKHFYVTS  +DHQNCAGG K PSV+A+AAEGAVVV 
Sbjct:   13 SSTPQPLYAPRPKIGDCFSSSVELRVASERAMLRDNRTMIADARGGGGHAKLYRCSGAIIEKGSKTTGGCQAHVKANKRADKHFYVTSVCYDHQNCAGGTKKPSVRAMAAEGAVVVR 129          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 7.080e-52
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = -1
Query:    1 PQSLLAPRPKLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKNPSVKALAAEGAVVVH 342
            PQSL    PK GD+F+ +  LRIA ERAML +GR++VSDHRVTGGH R+YRCSGAI+EKG K TGGCQ+HV+ANKR DKHF+VTSASF+HQNC GGKK PSV ALAAEGA VVH
Sbjct:   16 PQSLTVTPPKFGDAFACTRSLRIAAERAMLASGRTLVSDHRVTGGHQRLYRCSGAIMEKGTKNTGGCQAHVRANKRRDKHFHVTSASFEHQNCVGGKKKPSVAALAAEGAAVVH 129          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5JMR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR7_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.940e-42
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = -1
Query:    1 SERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKNPSVKALAAEGAVVVH 291
            S  LR+A+ERAML   R++++D R  GGH ++YRCSGAIIEKG KTTGGCQ+HVKANKRADKHFYVTS  +DHQNCAGG K PSV A+AAEGAVVV 
Sbjct:   53 SVELRVASERAMLRDNRTMIADARGGGGHAKLYRCSGAIIEKGSKTTGGCQAHVKANKRADKHFYVTSVCYDHQNCAGGTKKPSVGAMAAEGAVVVR 149          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.410e-34
Identity = 66/120 (55.00%), Postives = 91/120 (75.83%), Query Frame = -1
Query:    1 SSNSAPPQSLLAPRPKLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKNPSVKALAAEGAVVVH 360
            +S++AP  SL A  PK+GDSF+ +  LR+  ERA+L  GR++VSD R  G H +++RCSGA+I KG+++TGGCQ  ++ANKR DKH+Y+T   ++H +CAGGKK PSV ALA EG VVV+
Sbjct:   13 TSSAAP--SLSATLPKVGDSFACTRSLRLGRERALLSQGRTLVSDFRKGGSHAKLFRCSGAVIVKGQQSTGGCQVLIRANKRKDKHWYITETQYEHSSCAGGKK-PSVAALAKEGEVVVN 129          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5JDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI5_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.700e-29
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = -1
Query:   97 SAPPQSLLAPRPKLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFY 351
            S+ PQ L APRPK+G+S   S  LR+A+ERAML   R++++D R  GGH ++YRCSGAIIEKG KTTGGCQ+HVKANKRADKHFY
Sbjct:   13 SSTPQPLHAPRPKIGES---SVELRVASERAMLRDNRTMIADARGGGGHAKLYRCSGAIIEKGSKTTGGCQAHVKANKRADKHFY 94          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-9
Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = -1
Query:   46 KLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKN 315
            + G  FS S   + A ER M+ T R    D RV+GG G+++RC+GA+I    K T GC    +A K  D  + VT    DH  C G   N
Sbjct:   28 RYGQIFSSSREFKRAIERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGN 115          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.840e-9
Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = -1
Query:   46 KLGDSFSGSERLRIATERAMLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAGGKKN 315
            + G  FS S   + A ER M+ T R    D RV+GG G+++RC+GA+I    K T GC    +A K  D  + VT    DH  C G   N
Sbjct:   28 RYGQIFSSSREFKRAIERCMISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGN 115          
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 5.500e-6
Identity = 30/83 (36.14%), Postives = 40/83 (48.19%), Query Frame = -1
Query:   16 MLVTGRSIVSDHRVTGGHGRMYRCSGAIIEKGKKTTGGCQSHVKANKRADKHFYVTSASFDHQNCAG--GKKNPSVKALAAEG 258
            M+   R    D RV+GG G+++RC+GAII    K T GC    +  K+ D  + VT    DH  C G  G K   +     EG
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEG 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig801.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMW0_9PHAE1.950e-5270.94Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K387_9PHAE7.080e-5273.68MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JMR7_9PHAE4.940e-4272.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAT0_9PHAE4.410e-3455.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDI5_9PHAE1.700e-2967.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX21_9PHAE1.290e-938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE3.840e-938.89SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FZQ7_ECTSI5.500e-636.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig801contigP-littoralis_Contig801:99940..100332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791650.8528988-CDS-P-littoralis_Contig801:99939..1003321680791650.8528988-CDS-P-littoralis_Contig801:99939..100332Pylaiella littoralis U1_48CDSP-littoralis_Contig801 99940..100332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig801.13.1prot_P-littoralis_Contig801.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig801 99940..100332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig801.13.1

>prot_P-littoralis_Contig801.13.1 ID=prot_P-littoralis_Contig801.13.1|Name=mRNA_P-littoralis_Contig801.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
VDDHRAFGGEGLYAGVLLTAGAVLVIEGSAGDVEVLIGALVGFDVRLASS
GSLLALLDDGTGAAVHPPMAARDTMIGNDTATSDQHRAFGRDPEAFTPRE
GVPQLGTGRQQGLRRSTVRRHGSRAHSLVK*
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mRNA from alignment at P-littoralis_Contig801:99940..100332-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig801.13.1 ID=mRNA_P-littoralis_Contig801.13.1|Name=mRNA_P-littoralis_Contig801.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig801:99940..100332- (Pylaiella littoralis U1_48)
GTGGACGACCACCGCGCCTTCGGCGGCGAGGGCCTTTACGCTGGGGTTCT TCTTACCGCCGGCGCAGTTCTGGTGATCGAAGGAAGCGCTGGTGACGTAG AAGTGCTTATCGGCGCGCTTGTTGGCTTTGACGTGAGACTGGCATCCTCC GGTAGTCTTCTTGCCCTTCTCGATGATGGCACCGGAGCAGCGGTACATCC TCCCATGGCCGCCCGTGACACGATGATCGGAAACGATACTGCGACCAGTG ACCAACATCGCGCGTTCGGTCGCGATCCTGAGGCGTTCACTCCCCGAGAA GGAGTCCCCCAACTTGGGACGGGGCGCCAGCAGGGACTGCGGCGGAGCAC TGTTCGACGACATGGTTCGCGTGCACACTCCCTTGTGAAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig801:99940..100332-

>mRNA_P-littoralis_Contig801.13.1 ID=mRNA_P-littoralis_Contig801.13.1|Name=mRNA_P-littoralis_Contig801.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig801:99940..100332- (Pylaiella littoralis U1_48)
GTGGACGACCACCGCGCCTTCGGCGGCGAGGGCCTTTACGCTGGGGTTCT
TCTTACCGCCGGCGCAGTTCTGGTGATCGAAGGAAGCGCTGGTGACGTAG
AAGTGCTTATCGGCGCGCTTGTTGGCTTTGACGTGAGACTGGCATCCTCC
GGTAGTCTTCTTGCCCTTCTCGATGATGGCACCGGAGCAGCGGTACATCC
TCCCATGGCCGCCCGTGACACGATGATCGGAAACGATACTGCGACCAGTG
ACCAACATCGCGCGTTCGGTCGCGATCCTGAGGCGTTCACTCCCCGAGAA
GGAGTCCCCCAACTTGGGACGGGGCGCCAGCAGGGACTGCGGCGGAGCAC
TGTTCGACGACATGGTTCGCGTGCACACTCCCTTGTGAAGTAA
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